mRNA_H-canaliculatus_F_contig13279.2678.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13279.2678.1
Unique NamemRNA_H-canaliculatus_F_contig13279.2678.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13279.2678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13279contigH-canaliculatus_F_contig13279:1673..1993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.0173173-UTR-H-canaliculatus_F_contig13279:1672..16931622929065.0173173-UTR-H-canaliculatus_F_contig13279:1672..1693Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13279 1673..1693 +
1696845666.363342-UTR-H-canaliculatus_F_contig13279:1672..16931696845666.363342-UTR-H-canaliculatus_F_contig13279:1672..1693Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13279 1673..1693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.0334797-CDS-H-canaliculatus_F_contig13279:1693..19931622929065.0334797-CDS-H-canaliculatus_F_contig13279:1693..1993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 1694..1993 +
1696845666.3715386-CDS-H-canaliculatus_F_contig13279:1693..19931696845666.3715386-CDS-H-canaliculatus_F_contig13279:1693..1993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 1694..1993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13279.2678.1prot_H-canaliculatus_F_contig13279.2678.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13279 1694..1993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13279.2678.1

>prot_H-canaliculatus_F_contig13279.2678.1 ID=prot_H-canaliculatus_F_contig13279.2678.1|Name=mRNA_H-canaliculatus_F_contig13279.2678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MLGLGAEVFAGKVAGRDSAAKAEAKRGAASGAAAGAGGEVAGVAVSDDPG
LSNGHGPPPGRGGTPDAAPAKDRQQALSIPPEGSGGGTGGASRRLADVAD
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mRNA from alignment at H-canaliculatus_F_contig13279:1673..1993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13279.2678.1 ID=mRNA_H-canaliculatus_F_contig13279.2678.1|Name=mRNA_H-canaliculatus_F_contig13279.2678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=321bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13279:1673..1993+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGTGGTGGCGGCGGCGGCGATGCTGGGGCTCGGGGCGGAAGTCTTCGC
CGGCAAGGTTGCAGGGAGGGACTCGGCGGCGAAGGCCGAGGCGAAGAGAG
GTGCCGCGTCCGGGGCGGCCGCAGGGGCGGGAGGCGAGGTTGCCGGTGTT
GCGGTGAGCGACGATCCTGGCCTCTCCAACGGCCACGGGCCTCCTCCCGG
CAGAGGCGGGACGCCGGATGCTGCGCCAGCGAAGGACAGGCAGCAGGCTT
TGTCGATTCCGCCGGAAGGGAGTGGCGGCGGCACCGGCGGTGCGAGCCGA
CGGCTAGCCGACGTCGCTGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13279:1673..1993+

>mRNA_H-canaliculatus_F_contig13279.2678.1 ID=mRNA_H-canaliculatus_F_contig13279.2678.1|Name=mRNA_H-canaliculatus_F_contig13279.2678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13279:1673..1993+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGGGCTCGGGGCGGAAGTCTTCGCCGGCAAGGTTGCAGGGAGGGA
CTCGGCGGCGAAGGCCGAGGCGAAGAGAGGTGCCGCGTCCGGGGCGGCCG
CAGGGGCGGGAGGCGAGGTTGCCGGTGTTGCGGTGAGCGACGATCCTGGC
CTCTCCAACGGCCACGGGCCTCCTCCCGGCAGAGGCGGGACGCCGGATGC
TGCGCCAGCGAAGGACAGGCAGCAGGCTTTGTCGATTCCGCCGGAAGGGA
GTGGCGGCGGCACCGGCGGTGCGAGCCGACGGCTAGCCGACGTCGCTGAC
ATGCTGGGGCTCGGGGCGGAAGTCTTCGCCGGCAAGGTTGCAGGGAGGGA
CTCGGCGGCGAAGGCCGAGGCGAAGAGAGGTGCCGCGTCCGGGGCGGCCG
CAGGGGCGGGAGGCGAGGTTGCCGGTGTTGCGGTGAGCGACGATCCTGGC
CTCTCCAACGGCCACGGGCCTCCTCCCGGCAGAGGCGGGACGCCGGATGC
TGCGCCAGCGAAGGACAGGCAGCAGGCTTTGTCGATTCCGCCGGAAGGGA
GTGGCGGCGGCACCGGCGGTGCGAGCCGACGGCTAGCCGACGTCGCTGAC
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