mRNA_H-canaliculatus_F_contig1326.2672.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1326.2672.1
Unique NamemRNA_H-canaliculatus_F_contig1326.2672.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1326.2672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1326contigH-canaliculatus_F_contig1326:27035..27940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size726
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1326.2672.1prot_H-canaliculatus_F_contig1326.2672.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1326 27096..27671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.0404358-UTR-H-canaliculatus_F_contig1326:27034..270951622929064.0404358-UTR-H-canaliculatus_F_contig1326:27034..27095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 27035..27095 +
1696845665.927559-UTR-H-canaliculatus_F_contig1326:27034..270951696845665.927559-UTR-H-canaliculatus_F_contig1326:27034..27095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 27035..27095 +
1622929064.0886452-UTR-H-canaliculatus_F_contig1326:27671..279401622929064.0886452-UTR-H-canaliculatus_F_contig1326:27671..27940Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 27672..27940 +
1696845665.9597623-UTR-H-canaliculatus_F_contig1326:27671..279401696845665.9597623-UTR-H-canaliculatus_F_contig1326:27671..27940Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 27672..27940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.0576134-CDS-H-canaliculatus_F_contig1326:27095..273361622929064.0576134-CDS-H-canaliculatus_F_contig1326:27095..27336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 27096..27336 +
1696845665.9369802-CDS-H-canaliculatus_F_contig1326:27095..273361696845665.9369802-CDS-H-canaliculatus_F_contig1326:27095..27336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 27096..27336 +
1622929064.0729547-CDS-H-canaliculatus_F_contig1326:27516..276711622929064.0729547-CDS-H-canaliculatus_F_contig1326:27516..27671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 27517..27671 +
1696845665.947365-CDS-H-canaliculatus_F_contig1326:27516..276711696845665.947365-CDS-H-canaliculatus_F_contig1326:27516..27671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 27517..27671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1326.2672.1

>prot_H-canaliculatus_F_contig1326.2672.1 ID=prot_H-canaliculatus_F_contig1326.2672.1|Name=mRNA_H-canaliculatus_F_contig1326.2672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MTKSGFGSEFQRHGQGHREHDHQHHQHHRHHQDQDQQQQQQHRHHDRKPA
ARKRFSTRKHAGEDQWRGSAASTTHPHRHSAMTGKGKGFGDDEELLAPAA
GSVSSPSGWGVERPQQALSPRSPSFPASSRG*
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mRNA from alignment at H-canaliculatus_F_contig1326:27035..27940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1326.2672.1 ID=mRNA_H-canaliculatus_F_contig1326.2672.1|Name=mRNA_H-canaliculatus_F_contig1326.2672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:27035..27940+ (Hapterophycus canaliculatus Oshoro5f female)
CGGTGGCCCCGGGGTCGACGGCGGCGGCGGCATCGGTAGGGGCGCGCGCG
GCGGTGGCGGCATGACCAAGTCGGGCTTCGGCTCGGAGTTCCAGCGGCAC
GGCCAGGGGCACCGCGAGCACGACCACCAGCACCACCAGCACCACAGGCA
CCACCAGGACCAGGACCAGCAGCAGCAGCAGCAGCATCGGCACCACGACC
GGAAGCCGGCAGCGCGGAAGCGTTTCTCCACCAGGAAGCACGCCGGCGAG
GACCAGTGGAGGGGCTCCGCCGCCAGCACCACCCACCCCCACCGCCACAG
CGGTAGAAACAACGGCGGCGGCGGCGGCGGCGGCCGTGGCGATCTCATCG
GCAGCCCCGCGGCGGCCAACCAAGTCCCTAACAACTCGGCGCCCAGGTGG
ACGAGTCGCGGCAACAGCGAAGGAGGTGGCGACTCGAGGATGGGCGTAGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGGAGAGCGATGACCGGCAAGGGGA
AAGGTTTCGGGGACGACGAAGAGCTGCTCGCGCCGGCGGCGGGAAGCGTC
TCCTCCCCCTCGGGGTGGGGGGTGGAACGCCCGCAGCAGGCCCTGAGCCC
CCGCTCCCCTTCCTTTCCTGCGTCCTCGCGGGGTTGACGAGAAGGAACGT
GGGCTCGACGAAAAGGAACGAATCGCTCCCCCGCCGCTTCGCACCTGCTT
CGCACCTGCTTCGCGTATGGGGTTGGCCTTTGATTTAGCCGGTCGGTCGG
GTCCAACATGGCTGAGAGAGAGAGGGGGGTGTCTTGATCGGTGTTGGTCA
GGGATAGAGGCTGAGCAAATACCGCGTGTCGACGCTGGGTGACGATGGTG
AACGACATGGCCGGCCCCGGGAGGCGGGACAATCGCCGACGATGCGTCGT
CACGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1326:27035..27940+

>mRNA_H-canaliculatus_F_contig1326.2672.1 ID=mRNA_H-canaliculatus_F_contig1326.2672.1|Name=mRNA_H-canaliculatus_F_contig1326.2672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:27035..27940+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCAAGTCGGGCTTCGGCTCGGAGTTCCAGCGGCACGGCCAGGGGCA
CCGCGAGCACGACCACCAGCACCACCAGCACCACAGGCACCACCAGGACC
AGGACCAGCAGCAGCAGCAGCAGCATCGGCACCACGACCGGAAGCCGGCA
GCGCGGAAGCGTTTCTCCACCAGGAAGCACGCCGGCGAGGACCAGTGGAG
GGGCTCCGCCGCCAGCACCACCCACCCCCACCGCCACAGCGATGACCAAG
TCGGGCTTCGGCTCGGAGTTCCAGCGGCACGGCCAGGGGCACCGCGAGCA
CGACCACCAGCACCACCAGCACCACAGGCACCACCAGGACCAGGACCAGC
AGCAGCAGCAGCAGCATCGGCACCACGACCGGAAGCCGGCAGCGCGGAAG
CGTTTCTCCACCAGGAAGCACGCCGGCGAGGACCAGTGGAGGGGCTCCGC
CGCCAGCACCACCCACCCCCACCGCCACAGCGCGATGACCGGCAAGGGGA
AAGGTTTCGGGGACGACGAAGAGCTGCTCGCGCCGGCGGCGGGAAGCGTC
TCCTCCCCCTCGGGGTGGGGGGTGGAACGCCCGCAGCAGGCCCTGAGCCC
CCGCTCCCCTTCCTTTCCTGCGTCCTCGCGGGGTTGACGATGACCGGCAA
GGGGAAAGGTTTCGGGGACGACGAAGAGCTGCTCGCGCCGGCGGCGGGAA
GCGTCTCCTCCCCCTCGGGGTGGGGGGTGGAACGCCCGCAGCAGGCCCTG
AGCCCCCGCTCCCCTTCCTTTCCTGCGTCCTCGCGGGGTTGA
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