mRNA_H-canaliculatus_F_contig1326.2667.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1326.2667.1
Unique NamemRNA_H-canaliculatus_F_contig1326.2667.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1326.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1326contigH-canaliculatus_F_contig1326:719..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size550
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1326.2667.1prot_H-canaliculatus_F_contig1326.2667.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1326 870..1259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.9710956-UTR-H-canaliculatus_F_contig1326:718..8691622929063.9710956-UTR-H-canaliculatus_F_contig1326:718..869Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 719..869 +
1696845665.8784578-UTR-H-canaliculatus_F_contig1326:718..8691696845665.8784578-UTR-H-canaliculatus_F_contig1326:718..869Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 719..869 +
1622929064.0078814-UTR-H-canaliculatus_F_contig1326:1259..12771622929064.0078814-UTR-H-canaliculatus_F_contig1326:1259..1277Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 1260..1277 +
1696845665.9145284-UTR-H-canaliculatus_F_contig1326:1259..12771696845665.9145284-UTR-H-canaliculatus_F_contig1326:1259..1277Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 1260..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.9819405-CDS-H-canaliculatus_F_contig1326:869..11191622929063.9819405-CDS-H-canaliculatus_F_contig1326:869..1119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 870..1119 +
1696845665.8903968-CDS-H-canaliculatus_F_contig1326:869..11191696845665.8903968-CDS-H-canaliculatus_F_contig1326:869..1119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 870..1119 +
1622929063.9960177-CDS-H-canaliculatus_F_contig1326:1128..12591622929063.9960177-CDS-H-canaliculatus_F_contig1326:1128..1259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 1129..1259 +
1696845665.8991828-CDS-H-canaliculatus_F_contig1326:1128..12591696845665.8991828-CDS-H-canaliculatus_F_contig1326:1128..1259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 1129..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1326.2667.1

>prot_H-canaliculatus_F_contig1326.2667.1 ID=prot_H-canaliculatus_F_contig1326.2667.1|Name=mRNA_H-canaliculatus_F_contig1326.2667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MLLDVDDPRFSLSFRTRRRGSPHNAEGDEEMPIDGRLLGNIFASSVCSPA
SLLGPARSPELLAKQVTRPWLVLAEPVVGNTSPCPCLQLSWSHVGCCPCR
VSALSLSLSRCLQQGGGQSHAERLPK*
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mRNA from alignment at H-canaliculatus_F_contig1326:719..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1326.2667.1 ID=mRNA_H-canaliculatus_F_contig1326.2667.1|Name=mRNA_H-canaliculatus_F_contig1326.2667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=559bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:719..1277+ (Hapterophycus canaliculatus Oshoro5f female)
ACGGTGCGTTGGTCCAGTGCTTTCACTTGTGATTTTGGCCCTTAAGCGCG
GGGGAGGGAAGGGGTAGAGGGGTAGGGAGCGTGCCCGTGCCACGGGGTGG
GTGGCTCGGCCGAGAAGCTCCGAAGATTCCAACGGTCGTGTTAACGCGGA
AATGTTGTTGGATGTGGACGACCCGCGGTTCTCTCTATCCTTCCGCACGA
GACGACGTGGAAGCCCGCACAACGCGGAGGGGGACGAAGAGATGCCGATC
GACGGACGACTGTTGGGTAACATTTTTGCCTCTTCCGTCTGTTCGCCCGC
GTCTCTACTTGGCCCGGCCCGAAGCCCCGAGCTGCTCGCCAAGCAAGTGA
CAAGGCCTTGGTTGGTTTTGGCGGAGCCGGTGGTTGGGAACACGTCGCCG
TGTACGTGAGGCCCGTGCTTGCAGCTCTCTTGGAGCCATGTTGGCTGTTG
CCCTTGTCGAGTATCTGCTCTCTCTCTCTCTCTCTCTCGGTGTCTGCAGC
AGGGCGGGGGACAGAGCCACGCGGAGCGTTTACCCAAGTAGGGCGGCGAG
GACGGCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1326:719..1277+

>mRNA_H-canaliculatus_F_contig1326.2667.1 ID=mRNA_H-canaliculatus_F_contig1326.2667.1|Name=mRNA_H-canaliculatus_F_contig1326.2667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:719..1277+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTTGGATGTGGACGACCCGCGGTTCTCTCTATCCTTCCGCACGAG
ACGACGTGGAAGCCCGCACAACGCGGAGGGGGACGAAGAGATGCCGATCG
ACGGACGACTGTTGGGTAACATTTTTGCCTCTTCCGTCTGTTCGCCCGCG
TCTCTACTTGGCCCGGCCCGAAGCCCCGAGCTGCTCGCCAAGCAAGTGAC
AAGGCCTTGGTTGGTTTTGGCGGAGCCGGTGGTTGGGAACACGTCGCCGT
ATGTTGTTGGATGTGGACGACCCGCGGTTCTCTCTATCCTTCCGCACGAG
ACGACGTGGAAGCCCGCACAACGCGGAGGGGGACGAAGAGATGCCGATCG
ACGGACGACTGTTGGGTAACATTTTTGCCTCTTCCGTCTGTTCGCCCGCG
TCTCTACTTGGCCCGGCCCGAAGCCCCGAGCTGCTCGCCAAGCAAGTGAC
AAGGCCTTGGTTGGTTTTGGCGGAGCCGGTGGTTGGGAACACGTCGCCGT
GCCCGTGCTTGCAGCTCTCTTGGAGCCATGTTGGCTGTTGCCCTTGTCGA
GTATCTGCTCTCTCTCTCTCTCTCTCTCGGTGTCTGCAGCAGGGCGGGGG
ACAGAGCCACGCGGAGCGTTTACCCAAGTAGGCCCGTGCTTGCAGCTCTC
TTGGAGCCATGTTGGCTGTTGCCCTTGTCGAGTATCTGCTCTCTCTCTCT
CTCTCTCTCGGTGTCTGCAGCAGGGCGGGGGACAGAGCCACGCGGAGCGT
TTACCCAAGTAG
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