mRNA_H-canaliculatus_F_contig13245.2662.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13245.2662.1
Unique NamemRNA_H-canaliculatus_F_contig13245.2662.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A6H5K2K8_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K8_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 5.970e-67
Identity = 138/215 (64.19%), Postives = 147/215 (68.37%), Query Frame = 1 
Query:  436 SFADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGL-PSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADD-----GGAGGG-------------------------------NADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLP 969
            S  DGAVAQDLSQL +MWSLREHAP+A SLAGYTYKYD+S+PV DFKALA+ETRRRLRGL P  G  AA V  VAYGHLGDGNLHLNVCV A   D  S G ++     GG GG                                 ADVLAALEPFVFEWVVSR GSISAEHGVGQHKR YL LQRP AV+  MR VK +LDPRGIMNPFKVLP
Sbjct:  356 SVVDGAVAQDLSQLQAMWSLREHAPVAVSLAGYTYKYDISIPVGDFKALADETRRRLRGLFPEGGGGAATV--VAYGHLGDGNLHLNVCVSA---DGGSGGGEEPTAATGGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAWRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEAVLGVMRDVKGMLDPRGIMNPFKVLP 565
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A835ZEX4_9STRA (FAD-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.250e-41
Identity = 90/176 (51.14%), Postives = 108/176 (61.36%), Query Frame = 1 
Query:  445 DGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPE 972
            DG +AQD+SQ   +W++REH P+AA+  GY YKYDVSVP+  F  L    RRR + L      AA      YGHLGDGNLHLNV              DD        +VL ALEPFVF+WVV+ GGSISAEHGVGQHKR +L LQ+    +  M  +K   DPRGI+NP KVLP+
Sbjct:  330 DGVIAQDMSQAADLWAIREHVPVAAATGGYQYKYDVSVPIPRFYELVRAVRRRFQELSLAEDRAA---AFGYGHLGDGNLHLNVVCARK---------DD--------EVLRALEPFVFDWVVAAGGSISAEHGVGQHKRAFLGLQKGPEALALMAAIKRAFDPRGILNPGKVLPD 485
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: W4FF77_9STRA (FAD-binding PCMH-type domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF77_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.040e-39
Identity = 82/176 (46.59%), Postives = 106/176 (60.23%), Query Frame = 1 
Query:  445 DGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPE 972
            DG VAQD  Q   ++ +RE   LA S  GY YKYDVSVP+  +  + E+TR  L+       A  DV+VV YGHLGDGN+HLN+  P                   N+ V+AA+EPFVFEW  +R GSISAEHG+G HK  +L L + +  ++ M  +K L DPRGI+NP+KVLP 
Sbjct:  344 DGTVAQDAHQARKLFGIREDITLALSATGYVYKYDVSVPMDAYYTIVEDTRNHLK-------AFDDVQVVGYGHLGDGNMHLNISTPTY-----------------NSQVMAAIEPFVFEWTAARRGSISAEHGIGTHKPAFLHLSKVKNAINMMHQMKALYDPRGILNPYKVLPN 495
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A1B6H5K8_9HEMI (FAD-oxidase_C domain-containing protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6H5K8_9HEMI)

HSP 1 Score: 150 bits (378), Expect = 3.480e-38
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 1 
Query:  430 QDSFADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPE 972
            Q S +DG V  + S++  +W LRE  P A     Y Y YD+S+P  D+  +    R RL+G  +         V  +GHLGDGNLHLN+C P                   + ++LA LEPFVFEW+  RGGS+SAEHG+G  K  +L+  +  A +  MR VK L+DPRGI+NP+KVLP+
Sbjct:   17 QGSTSDGLVTAEPSKMKDLWQLRERIPEALFKNSYAYMYDISLPHDDYYNIVPVLRERLQGSEAFA-------VTGFGHLGDGNLHLNICSPQF-----------------SPELLAQLEPFVFEWINERGGSVSAEHGIGFTKTQFLKYSKSEAAIRTMRQVKSLMDPRGILNPYKVLPQ 173
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A3F2S233_9STRA (FAD-oxidase_C domain-containing protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S233_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.950e-37
Identity = 78/174 (44.83%), Postives = 102/174 (58.62%), Query Frame = 1 
Query:  445 DGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVL 966
            DG VAQD SQ  +++ +RE   +A +  GY YKYDVSVP+  +  +AEETR RL        A+ D KVV YGH+GD N+HLN+                      +  V  ALEPFVFEW     GSISAEHG+G HK  YL L +    +  MR +K+++DP+GI+NP+KVL
Sbjct:   48 DGTVAQDASQARNLFMIREDITVALAARGYVYKYDVSVPIEQYYKIAEETRERL--------ASMDAKVVCYGHIGDCNVHLNISTLEY-----------------DEKVFNALEPFVFEWTSQFRGSISAEHGIGTHKPSYLHLSKSDNAIKLMRQMKNMMDPKGILNPYKVL 196
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A662X9L5_9STRA (FAD-oxidase_C domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9L5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.860e-37
Identity = 74/181 (40.88%), Postives = 102/181 (56.35%), Query Frame = 1 
Query:  436 SFADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPEGS 978
            +  DG VAQD +Q   ++ +RE   +A +  GY YKYDVS+P+  +  +AEETR RL        A  D +VV YGH+GD N+HLN+                      +  V  ALEPF+FEW     GSISAEHG+G HK  +L L +    +  M+ +K ++DP+GI+NP+KVLPE  
Sbjct:    5 AVVDGTVAQDAAQARKLFMIREDITVALAARGYVYKYDVSLPIEQYYKIAEETRARL--------APMDAEVVCYGHIGDSNVHLNISTLEY-----------------DEKVFNALEPFIFEWTSKYRGSISAEHGIGTHKPSFLHLSKSDNAIKLMKQMKRMMDPKGILNPYKVLPEAE 160
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A8J4W7U0_9STRA (FAD-oxidase_C domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4W7U0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.570e-37
Identity = 78/175 (44.57%), Postives = 101/175 (57.71%), Query Frame = 1 
Query:  445 DGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLP 969
            DG VAQD SQ  +++ +RE   +A +  GY YKYDVSVP+  +  +AEETR RL        A  D KVV YGH+GD N+HLN+                      +  V  ALEPFVFEW     GSISAEHG+G HK  YL L +    +  M  +K+++DP+GI+NP+KVLP
Sbjct:   45 DGTVAQDASQARNLFMIREDITVALAARGYVYKYDVSVPIEQYYKIAEETRERL--------APMDAKVVCYGHIGDCNVHLNISTLEY-----------------DEKVFNALEPFVFEWTSQFRGSISAEHGIGTHKPSYLHLSKSDNAIKLMCQMKNMMDPKGILNPYKVLP 194
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A5D6Y4I7_9STRA (FAD-binding PCMH-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4I7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.750e-37
Identity = 88/177 (49.72%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  442 ADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPE 972
            ADG VAQD +Q   ++SLREH PLA +  GY YKYD+S+P+R F  +AE TR RL  L        D  VV YGHLGD N+HLNV   A          DD         V  ALEPFVFE+     GSISAEHGVG HK  YL L +  + +  M  +K LLDP GI+NP+KVLP 
Sbjct:  328 ADGTVAQDGTQAKKLFSLREHVPLALAARGYVYKYDLSLPMRQFYRIAEATRERLAHL--------DAHVVCYGHLGDSNVHLNVSTLAY---------DDA--------VALALEPFVFEFTSKYRGSISAEHGVGVHKPSYLHLTKSPSAIALMAQLKTLLDPNGILNPYKVLPS 479
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BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: A0A2P2LJW3_RHIMU (Uncharacterized protein MANES_01G140700 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LJW3_RHIMU)

HSP 1 Score: 146 bits (368), Expect = 2.550e-36
Identity = 81/178 (45.51%), Postives = 102/178 (57.30%), Query Frame = 1 
Query:  439 FADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLPE 972
             +DG +AQD+ Q +S W +RE  P A   AG  YKYD+S+PV     LAE+ R RL      G +A   KVVAYGHLGDGNLHLN+  P                   N  +LA +EPFV+EW     GSISAEHG+G  K + +   + + VV  M  +K LLDP GI+NP+KVLP 
Sbjct:   56 ISDGVLAQDIYQASSFWRIREGIPEALMRAGPLYKYDLSIPVEKLYDLAEDMRARL------GQSA---KVVAYGHLGDGNLHLNISAPKY-----------------NDMILAQIEPFVYEWTSKHRGSISAEHGLGLMKANEIFYSKAQEVVQVMASIKKLLDPNGILNPYKVLPH 207
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Match: UPI001BB0ECC8 (D-2-hydroxyglutarate dehydrogenase, mitochondrial-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0ECC8)

HSP 1 Score: 154 bits (390), Expect = 3.970e-36
Identity = 80/176 (45.45%), Postives = 107/176 (60.80%), Query Frame = 1 
Query:  442 ADGAVAQDLSQLNSMWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAAAADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAALEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLDPRGIMNPFKVLP 969
            +DG VA D+S++ ++WSLRE         G+ +KYD++VP+ DF  L EETR RL G         +  VV YGH+GD NLHLN  +P                   +A+V A LEPFV+EW   R GS+SAEHG+G  KR+Y+ L +    VD M+G+K LLDP+GI+NP+KVLP
Sbjct:  405 SDGTVATDVSKITALWSLRERIAEGLLKLGWCFKYDLTVPINDFYRLVEETRHRLDG--------TNATVVGYGHVGDENLHLNAVMPEY-----------------DANVHALLEPFVYEWTSERRGSVSAEHGLGFLKRNYIGLSKTAEAVDIMQGMKSLLDPKGILNPYKVLP 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13245.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2K8_9PHAE5.970e-6764.19FAD-binding PCMH-type domain-containing protein n=... [more]
A0A835ZEX4_9STRA3.250e-4151.14FAD-binding domain-containing protein n=1 Tax=Trib... [more]
W4FF77_9STRA7.040e-3946.59FAD-binding PCMH-type domain-containing protein n=... [more]
A0A1B6H5K8_9HEMI3.480e-3841.99FAD-oxidase_C domain-containing protein (Fragment)... [more]
A0A3F2S233_9STRA1.950e-3744.83FAD-oxidase_C domain-containing protein (Fragment)... [more]
A0A662X9L5_9STRA3.860e-3740.88FAD-oxidase_C domain-containing protein n=1 Tax=No... [more]
A0A8J4W7U0_9STRA4.570e-3744.57FAD-oxidase_C domain-containing protein n=2 Tax=Ph... [more]
A0A5D6Y4I7_9STRA6.750e-3749.72FAD-binding PCMH-type domain-containing protein n=... [more]
A0A2P2LJW3_RHIMU2.550e-3645.51Uncharacterized protein MANES_01G140700 n=1 Tax=Rh... [more]
UPI001BB0ECC83.970e-3645.45D-2-hydroxyglutarate dehydrogenase, mitochondrial-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13245contigH-canaliculatus_F_contig13245:4..2972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog653948.CCA17465
Preferred nameD2HGDH
KEGG rclassRC00044
KEGG koko:K18204,ko:K21618
KEGG ReactionR11593
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003779,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006089,GO:0006091,GO:0006103,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0015980,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016898,GO:0019249,GO:0019516,GO:0019538,GO:0019752,GO:0022900,GO:0022904,GO:0030447,GO:0031974,GO:0032025,GO:0032787,GO:0036094,GO:0040007,GO:0042221,GO:0043094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0051990,GO:0055114,GO:0070013,GO:0071704,GO:0071949,GO:0072329,GO:0072330,GO:0097159,GO:0099615,GO:1901265,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1903457
EggNOG free text desc.Dehydrogenase
EggNOG OGsCOG0277@1,KOG1232@2759
EC1.1.99.39,1.1.99.40
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD-linked oxidase-like, C-terminal
Ec32 orthologEc-26_003740.1
Exons2
Model size2333
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13245.2662.1prot_H-canaliculatus_F_contig13245.2662.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13245 487..1623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.56124-UTR-H-canaliculatus_F_contig13245:3..4861622929062.56124-UTR-H-canaliculatus_F_contig13245:3..486Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13245 4..486 +
1696845665.4645422-UTR-H-canaliculatus_F_contig13245:3..4861696845665.4645422-UTR-H-canaliculatus_F_contig13245:3..486Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13245 4..486 +
1622929062.5999668-UTR-H-canaliculatus_F_contig13245:1623..29721622929062.5999668-UTR-H-canaliculatus_F_contig13245:1623..2972Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13245 1624..2972 +
1696845665.497768-UTR-H-canaliculatus_F_contig13245:1623..29721696845665.497768-UTR-H-canaliculatus_F_contig13245:1623..2972Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13245 1624..2972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.5761325-CDS-H-canaliculatus_F_contig13245:486..7181622929062.5761325-CDS-H-canaliculatus_F_contig13245:486..718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13245 487..718 +
1696845665.4786296-CDS-H-canaliculatus_F_contig13245:486..7181696845665.4786296-CDS-H-canaliculatus_F_contig13245:486..718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13245 487..718 +
1622929062.5896392-CDS-H-canaliculatus_F_contig13245:1354..16231622929062.5896392-CDS-H-canaliculatus_F_contig13245:1354..1623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13245 1355..1623 +
1696845665.4898837-CDS-H-canaliculatus_F_contig13245:1354..16231696845665.4898837-CDS-H-canaliculatus_F_contig13245:1354..1623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13245 1355..1623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13245.2662.1

>prot_H-canaliculatus_F_contig13245.2662.1 ID=prot_H-canaliculatus_F_contig13245.2662.1|Name=mRNA_H-canaliculatus_F_contig13245.2662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
MWSLREHAPLAASLAGYTYKYDVSVPVRDFKALAEETRRRLRGLPSLGAA
AADVKVVAYGHLGDGNLHLNVCVPASLADAASDGADDGGAGGGNADVLAA
LEPFVFEWVVSRGGSISAEHGVGQHKRDYLELQRPRAVVDAMRGVKDLLD
PRGIMNPFKVLPEGSR*
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mRNA from alignment at H-canaliculatus_F_contig13245:4..2972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13245.2662.1 ID=mRNA_H-canaliculatus_F_contig13245.2662.1|Name=mRNA_H-canaliculatus_F_contig13245.2662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2969bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13245:4..2972+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTAGACGTCGGTTCGGTCGGTGCCGTCGCGCTCGTGGATGACCGCCG
TTTCTTTGCTCCGCCGTTTCGGTCTCGCTCCCGGCGACGGCGTTGTGGCG
GGGTACACGCACGCAAGCATAAGTGTGCCTCTCGCGAGGAGATCGACCCA
GGCCCGACTACCTTTCTCACCACTGCCTGTATCCGGTCCCTCATCTGTCC
GCCAGTCCGAGGGTAAAATTTCCCGGGCCAACTCCCCAGCCGCTCCCGCG
ACCTTTCCCCTTCCCAGATAAGCAGGGAACCACCCCGCGAACGATTGGGC
ACATATTTTTCAAGGGAACGCCCGAACTTCGGTGTTGCCTCTTTGTCAGG
AGCAGGAACGGCGCCCTGCCTTCAGGCGGGGCGCGGCCTCACACCTCCGC
CGCCCCACCCCCGCCTCGTCCCGCGCTGGCAGGACTCCTTTGCGGACGGA
GCTGTCGCCCAGGACCTGAGCCAGCTAAACTCGATGTGGTCCCTGCGCGA
GCACGCGCCGCTGGCCGCCTCCCTTGCCGGCTACACGTACAAGTACGACG
TGTCGGTGCCCGTGCGAGACTTCAAGGCCCTCGCCGAGGAGACGCGGCGG
CGGTTGCGAGGCCTGCCGTCTCTGGGCGCCGCCGCTGCGGACGTGAAGGT
GGTGGCGTACGGCCACCTCGGAGATGGAAACCTGCACCTTAATGTCTGCG
TGCCGGCCTCACTAGGTGGGAAGGAGGACGGGGGGTCCGCGGAAGCGAGG
CTTTGGGGGGCGGGGGTCTGCGCGGTGTGTGCGCAATTTTCTCCTGCTCC
CCTTACTCCCCCTCACCCGGGGGCGATCCTTTGCGCCCGATTGGTTTGGC
CAAAATAGCACCCCATCCATGTGTCGACGAATAAGGCAAAGCCGGCGGAG
ATTCCGCGTGTCGGGTACACCTCGTTCCGTTCCACGGTCAACGAGGCCTG
GCGTGGGATAACGTTGAAAGTACCCCCGCGGGGCCGCAAAAGCGTTGCAG
GCTATCGGCTGCGGAGGTGACCCTCCTTTTTACGATGGCGGCGCTCGGCG
CCTGTCGCGTTCTCGCTTGCCCCTCAGAATTTTTTTTATTTATTTTTTGC
CGTCCGTCATGGTGCCGAGTGGGCCCACGCACACACACCCCACGTATCCC
CCTTCATCGTCCTGTTGATCTTGACCCCCCGCGCGGAAGTCTCCGCCGCT
GTCCTTCCACTCACCGAACGCAAAGCCAACCTCGCGATGACCTCCCTTCA
AGCTTGACCCTCTCTCCTCCGATGTCTCCCCTTCCTCCTTCTACGTGATC
TCGCTACAATGCTCGCCGGCCTCGCCAAACCCGATCAATGCGCTTCCCAA
GCTGACGCGGCGAGCGACGGTGCCGACGACGGTGGCGCCGGCGGCGGAAA
TGCCGACGTGTTAGCGGCGCTCGAGCCTTTCGTGTTCGAGTGGGTGGTGT
CGAGGGGGGGCAGCATCAGCGCGGAGCACGGCGTGGGGCAGCACAAACGG
GATTACCTCGAGCTGCAGCGGCCGCGCGCCGTCGTCGATGCGATGAGGGG
CGTCAAGGACCTGCTGGATCCGCGGGGCATCATGAACCCTTTCAAGGTTC
TGCCGGAGGGGTCGCGGTGATGATGAGCAGGCACCAGTTGGCGGCCGCTG
GTTCCCTGCTTGGCTCTCACTCCTGGCTCCCCGGGGGCGGGCGTGGATCG
TGCCTGCTTTGCTTGCTTTGCTTGCTTTGCTTGCTCTGCTTGCTTTGCTT
GCTCCTTCTGTGCTCGTTTTTGGTCTCTACCGCTGGCTTCGTCACGAGCG
CGGCGGAGAAGAAGGAGAATGGCGCATGCCGTCTCTCCTTCCCTGCCTGC
CTTCCTTGGCCCAAAGACTCGCAACAGAGAGGAGTGTTGACAGTCTCAAC
CACGTACACGCGCGAAGCCCTGACGGGGCGGCGGTGCGGATGTACGTCGA
TGTTGAGTGAGCACGTACAGCTGCGGCGTTGTGGCATCGGAGCCCTTCCG
GGTACCACACGCTCGGAAGTAAGAGCACTTCGCGGACGAAACAATGCCCT
ATAGCCCCCAGAAGAATTTTGCTAAAATTCCAGCATCGACCTTGGCAAGC
GACCGGTGGAGGGAAACAAGCATGGCAACCATCGACCCCAGGACATGCAA
AAATAGCGTTTTTTTGGGGTCGAAGGGATGGACAAGGAGGTGGACAGCTC
GGGCACCTCCTGCGCGCGCGCGCGTGTGTGTTTGTTGTCAAGTACGCGCG
CCCGAATGGTGACTGTTGGTGTGGGGGTGGAAGTGTCAGTAACGTGTCAG
TAACGGGCATTTGCCCGAGCGGCAGCGTTGAAAAACACGACACGGTGCAC
AGGTGCACAGCCGGATGGAAGTGGGTCCATCATGCTGGCGCGGCCCGACC
GGTGGTGGTGGGCGAATGGGAACCACGCCACAAGAAAACAGTGGAGACGG
AAACCACACCGGGAATGAACGAGAAGAGAAACATGAGCGGTGATTATTCA
CGATCCGATAGCTGCGACGGGAAAGCGGCGGCCGGTGAAAATCGATCTCG
CCCTCCTTGTTGACGACCATGTTTACAGCACAGCACAAGTCCAGAGTTGC
GCGGCTCGAGCCTTCACCCGGCACCACGCCCGTAGCAATCCAAGAACAAG
AACAACAACAAACACCGAAGCCGCCGAGGCTGTTGACAGATGCAAGAAGA
AAAACAGGCATCGCGTGGCAACCACAGCTTACAATGACACGACTGACTAC
CCAGCGGAGACACAAACATACACACACACGCTAACAAGGGCCAAAGGAAG
GAAAGAAGGGTGCTTGTTTCAGACAAGCTTCGTTCTCCGCCGCCCTTCGC
CGTCCCCCGCGTACCGACGATGCGCACCCTCTTTTTTGCTCTCCTTTAAC
CCCTCTCTGTTCATTCTCTCGCTCGTCTCCCTCTCATACCTCACACACAA
CGATATCACAAACCCTCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13245:4..2972+

>mRNA_H-canaliculatus_F_contig13245.2662.1 ID=mRNA_H-canaliculatus_F_contig13245.2662.1|Name=mRNA_H-canaliculatus_F_contig13245.2662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13245:4..2972+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTCCCTGCGCGAGCACGCGCCGCTGGCCGCCTCCCTTGCCGGCTA
CACGTACAAGTACGACGTGTCGGTGCCCGTGCGAGACTTCAAGGCCCTCG
CCGAGGAGACGCGGCGGCGGTTGCGAGGCCTGCCGTCTCTGGGCGCCGCC
GCTGCGGACGTGAAGGTGGTGGCGTACGGCCACCTCGGAGATGGAAACCT
GCACCTTAATGTCTGCGTGCCGGCCTCACTAGATGTGGTCCCTGCGCGAG
CACGCGCCGCTGGCCGCCTCCCTTGCCGGCTACACGTACAAGTACGACGT
GTCGGTGCCCGTGCGAGACTTCAAGGCCCTCGCCGAGGAGACGCGGCGGC
GGTTGCGAGGCCTGCCGTCTCTGGGCGCCGCCGCTGCGGACGTGAAGGTG
GTGGCGTACGGCCACCTCGGAGATGGAAACCTGCACCTTAATGTCTGCGT
GCCGGCCTCACTAGCTGACGCGGCGAGCGACGGTGCCGACGACGGTGGCG
CCGGCGGCGGAAATGCCGACGTGTTAGCGGCGCTCGAGCCTTTCGTGTTC
GAGTGGGTGGTGTCGAGGGGGGGCAGCATCAGCGCGGAGCACGGCGTGGG
GCAGCACAAACGGGATTACCTCGAGCTGCAGCGGCCGCGCGCCGTCGTCG
ATGCGATGAGGGGCGTCAAGGACCTGCTGGATCCGCGGGGCATCATGAAC
CCTTTCAAGGTTCTGCCGGAGGGGTCGCGGTGACTGACGCGGCGAGCGAC
GGTGCCGACGACGGTGGCGCCGGCGGCGGAAATGCCGACGTGTTAGCGGC
GCTCGAGCCTTTCGTGTTCGAGTGGGTGGTGTCGAGGGGGGGCAGCATCA
GCGCGGAGCACGGCGTGGGGCAGCACAAACGGGATTACCTCGAGCTGCAG
CGGCCGCGCGCCGTCGTCGATGCGATGAGGGGCGTCAAGGACCTGCTGGA
TCCGCGGGGCATCATGAACCCTTTCAAGGTTCTGCCGGAGGGGTCGCGGT
GA
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