mRNA_H-canaliculatus_F_contig1324.2659.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1324.2659.1
Unique NamemRNA_H-canaliculatus_F_contig1324.2659.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1324.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1324contigH-canaliculatus_F_contig1324:11519..13062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.1992455-CDS-H-canaliculatus_F_contig1324:11518..118501622929062.1992455-CDS-H-canaliculatus_F_contig1324:11518..11850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 11519..11850 -
1696845665.295787-CDS-H-canaliculatus_F_contig1324:11518..118501696845665.295787-CDS-H-canaliculatus_F_contig1324:11518..11850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 11519..11850 -
1622929062.211968-CDS-H-canaliculatus_F_contig1324:12962..130621622929062.211968-CDS-H-canaliculatus_F_contig1324:12962..13062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 12963..13062 -
1696845665.303843-CDS-H-canaliculatus_F_contig1324:12962..130621696845665.303843-CDS-H-canaliculatus_F_contig1324:12962..13062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 12963..13062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1324.2659.1prot_H-canaliculatus_F_contig1324.2659.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1324 11519..13062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1324.2659.1

>prot_H-canaliculatus_F_contig1324.2659.1 ID=prot_H-canaliculatus_F_contig1324.2659.1|Name=mRNA_H-canaliculatus_F_contig1324.2659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
PQEDRSSTLGDMESPAAVVPFEVGGAALATAPEAGPSDAGTTTAMAAAMD
VDTTPATSSPFPFQAPSPVAPTNTVGSPPSSTPLPASRVPGPSSSNVSNG
SSGGGGEVDGGASSISTNSDSHSHSDSSPAMTLSNDLVESSMSG
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mRNA from alignment at H-canaliculatus_F_contig1324:11519..13062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1324.2659.1 ID=mRNA_H-canaliculatus_F_contig1324.2659.1|Name=mRNA_H-canaliculatus_F_contig1324.2659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1544bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1324:11519..13062- (Hapterophycus canaliculatus Oshoro5f female)
CCACAGGAAGACAGGAGTTCCACCCTGGGCGACATGGAATCCCCTGCTGC
TGTCGTGCCCTTCGAAGTGGGAGGAGCAGCGCTAGCGACCGCACCTGAAG
GTAAGATATCCATGATAGTATCGCTTCTTCAGGACAATATCCAACTGCCC
TCCTCAACGACGATTACTTCGTGTAGCTCCCACCGATTTTGAACACGCGG
GGGTAGAAGACTAGACCTGCTGGCGCGCTGCATCTACGGCACGACTTGGA
GGCCAGAGGGACCCAGTACAGTTCGTGGATGGCGGTGGTAGCGGCGTCGT
TTTCGTAGGGAGTCGAGAAAGGCTCCCGCACGCACCCCGAGGCGCGTCGA
AGGTCTTCGAAGGCGTCGAGCAGCCTTCGTGCTGGAGGTATCCAAACTGC
GGCAGCAACAGCAGCAGCAGCAGTGTCAACACATGCGTGTATGGATTTGG
CGCTCTTGAGAAAGAGCTACCAGGGTAAGCCAGGGTACGCCTCCTCCTCG
TCGGGTCGGATGCGCCCCGCGTCACGAGGCCGCTCGGTGGAAGCAATGCA
GCAGGAGCCCCGAGAACAGCGGTCGCGAACTGCATCGGAGATACGGCAGA
GTTCTGTCCCCACGACCAATACCATTACGAAACAGGAGCAGTTCGAGCAT
GTGCTGGCGGCTGCAGTCTTTCCCCCGTGGAGACCCGGTGATGGCGAGTC
CGCCTACCCCCCTCCCCATTTTATTTTTTAAAGCCACCACCCCCACCAGC
TTAGATCGACCTCCTACCGCTGATTTCTGAATCAGATGTGATTTCGTGAA
GGAGCCGTTGATCTTTCGTTTCACCGGCATCAGTGGTCCAGACCTGCCAG
GCCATGCCCTCCGCTGCTAAGTATCAAGGAATGCGCCTCCTGCCTCTCTG
CCCAGAGGCACGTTAGGGGGCCTCGACCGCGGCTGCCTACTGCCTACCGA
AGAAAGTAGCGGCCGTTTTTGAAACGATCCTGCCTCTTCTGTACCTCCGA
TCCCGCTCCTCTCTGCATCCATTTCTCGCCCCTCTATCATTCTTTCCCAA
TAACTCGGTCCATCTCTTGTCCAATCTCTTTTCCGCCTTCCCAAACTCTT
CAACCTCCCACCCCACCACCCTCTCTCGAACCCCCTCCGATGCCCCCTCT
CTTCTCTCTCCTCCTCCCTCCCTGCGCCTCTGTCCCTACCCGCCGAATCG
GTCCTCGACTAGCTGGACCCAGCGATGCGGGGACGACGACGGCCATGGCC
GCGGCCATGGATGTCGATACGACGCCAGCGACCTCCTCTCCCTTCCCCTT
CCAGGCGCCTTCCCCGGTAGCCCCCACGAATACGGTGGGCTCTCCGCCTT
CCTCCACGCCGCTGCCGGCGTCAAGGGTCCCCGGCCCAAGCAGCAGCAAC
GTGAGCAACGGCAGCAGCGGAGGCGGCGGCGAAGTCGACGGCGGCGCGAG
CAGTATCAGCACCAACAGCGACAGCCACAGCCACAGCGACAGTAGTCCAG
CGATGACGCTTTCGAACGACTTAGTTGAGTCTAGCATGAGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1324:11519..13062-

>mRNA_H-canaliculatus_F_contig1324.2659.1 ID=mRNA_H-canaliculatus_F_contig1324.2659.1|Name=mRNA_H-canaliculatus_F_contig1324.2659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1324:11519..13062- (Hapterophycus canaliculatus Oshoro5f female)
CCACAGGAAGACAGGAGTTCCACCCTGGGCGACATGGAATCCCCTGCTGC
TGTCGTGCCCTTCGAAGTGGGAGGAGCAGCGCTAGCGACCGCACCTGAAG
CCACAGGAAGACAGGAGTTCCACCCTGGGCGACATGGAATCCCCTGCTGC
TGTCGTGCCCTTCGAAGTGGGAGGAGCAGCGCTAGCGACCGCACCTGAAG
CTGGACCCAGCGATGCGGGGACGACGACGGCCATGGCCGCGGCCATGGAT
GTCGATACGACGCCAGCGACCTCCTCTCCCTTCCCCTTCCAGGCGCCTTC
CCCGGTAGCCCCCACGAATACGGTGGGCTCTCCGCCTTCCTCCACGCCGC
TGCCGGCGTCAAGGGTCCCCGGCCCAAGCAGCAGCAACGTGAGCAACGGC
AGCAGCGGAGGCGGCGGCGAAGTCGACGGCGGCGCGAGCAGTATCAGCAC
CAACAGCGACAGCCACAGCCACAGCGACAGTAGTCCAGCGATGACGCTTT
CGAACGACTTAGTTGAGTCTAGCATGAGCGGCCTGGACCCAGCGATGCGG
GGACGACGACGGCCATGGCCGCGGCCATGGATGTCGATACGACGCCAGCG
ACCTCCTCTCCCTTCCCCTTCCAGGCGCCTTCCCCGGTAGCCCCCACGAA
TACGGTGGGCTCTCCGCCTTCCTCCACGCCGCTGCCGGCGTCAAGGGTCC
CCGGCCCAAGCAGCAGCAACGTGAGCAACGGCAGCAGCGGAGGCGGCGGC
GAAGTCGACGGCGGCGCGAGCAGTATCAGCACCAACAGCGACAGCCACAG
CCACAGCGACAGTAGTCCAGCGATGACGCTTTCGAACGACTTAGTTGAGT
CTAGCATGAGCGGC
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