mRNA_H-canaliculatus_F_contig1323.2657.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1323.2657.1
Unique NamemRNA_H-canaliculatus_F_contig1323.2657.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1323.2657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1323contigH-canaliculatus_F_contig1323:6377..12129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine-rich repeat
Ec32 orthologEc-28_000190.1
Exons9
Model size652
Cds size651
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.8186798-CDS-H-canaliculatus_F_contig1323:6376..64321622929061.8186798-CDS-H-canaliculatus_F_contig1323:6376..6432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 6377..6432 +
1696845665.1774032-CDS-H-canaliculatus_F_contig1323:6376..64321696845665.1774032-CDS-H-canaliculatus_F_contig1323:6376..6432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 6377..6432 +
1622929061.8371904-CDS-H-canaliculatus_F_contig1323:6843..69331622929061.8371904-CDS-H-canaliculatus_F_contig1323:6843..6933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 6844..6933 +
1696845665.1868684-CDS-H-canaliculatus_F_contig1323:6843..69331696845665.1868684-CDS-H-canaliculatus_F_contig1323:6843..6933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 6844..6933 +
1622929061.8545465-CDS-H-canaliculatus_F_contig1323:7655..77241622929061.8545465-CDS-H-canaliculatus_F_contig1323:7655..7724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 7656..7724 +
1696845665.1964686-CDS-H-canaliculatus_F_contig1323:7655..77241696845665.1964686-CDS-H-canaliculatus_F_contig1323:7655..7724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 7656..7724 +
1622929061.9260209-CDS-H-canaliculatus_F_contig1323:8459..85311622929061.9260209-CDS-H-canaliculatus_F_contig1323:8459..8531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 8460..8531 +
1696845665.2063456-CDS-H-canaliculatus_F_contig1323:8459..85311696845665.2063456-CDS-H-canaliculatus_F_contig1323:8459..8531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 8460..8531 +
1622929061.9451244-CDS-H-canaliculatus_F_contig1323:8770..88421622929061.9451244-CDS-H-canaliculatus_F_contig1323:8770..8842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 8771..8842 +
1696845665.2170694-CDS-H-canaliculatus_F_contig1323:8770..88421696845665.2170694-CDS-H-canaliculatus_F_contig1323:8770..8842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 8771..8842 +
1622929061.9658537-CDS-H-canaliculatus_F_contig1323:9127..91991622929061.9658537-CDS-H-canaliculatus_F_contig1323:9127..9199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9128..9199 +
1696845665.2267308-CDS-H-canaliculatus_F_contig1323:9127..91991696845665.2267308-CDS-H-canaliculatus_F_contig1323:9127..9199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9128..9199 +
1622929061.9840539-CDS-H-canaliculatus_F_contig1323:9469..95411622929061.9840539-CDS-H-canaliculatus_F_contig1323:9469..9541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9470..9541 +
1696845665.234993-CDS-H-canaliculatus_F_contig1323:9469..95411696845665.234993-CDS-H-canaliculatus_F_contig1323:9469..9541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9470..9541 +
1622929062.0282125-CDS-H-canaliculatus_F_contig1323:9828..99001622929062.0282125-CDS-H-canaliculatus_F_contig1323:9828..9900Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9829..9900 +
1696845665.2429888-CDS-H-canaliculatus_F_contig1323:9828..99001696845665.2429888-CDS-H-canaliculatus_F_contig1323:9828..9900Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 9829..9900 +
1622929062.0493395-CDS-H-canaliculatus_F_contig1323:12053..121291622929062.0493395-CDS-H-canaliculatus_F_contig1323:12053..12129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 12054..12129 +
1696845665.2546175-CDS-H-canaliculatus_F_contig1323:12053..121291696845665.2546175-CDS-H-canaliculatus_F_contig1323:12053..12129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 12054..12129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1323.2657.1prot_H-canaliculatus_F_contig1323.2657.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1323 6377..12129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1323.2657.1

>prot_H-canaliculatus_F_contig1323.2657.1 ID=prot_H-canaliculatus_F_contig1323.2657.1|Name=mRNA_H-canaliculatus_F_contig1323.2657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
EVNECIADPLSCRPGIGSVSFSGCQLSEGDIGDLNYCFTTIGRSGLRYIN
LDDNDFIAVPPIFEELTALTHLNLGRNEITSFSAGDFAGLSDLSTLFLYD
NQIASFSTGDSDDLVGLQTLSLSGNRITSLPADAFAGLSGLVYLYIFESG
ISILDADAFAGLDHLLFLNIEGNDISLLPAGLFAGTSALSFLNLNGNQLG
AISSGVFNGLAQLREL*
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mRNA from alignment at H-canaliculatus_F_contig1323:6377..12129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1323.2657.1 ID=mRNA_H-canaliculatus_F_contig1323.2657.1|Name=mRNA_H-canaliculatus_F_contig1323.2657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5753bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1323:6377..12129+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGTAAACGAATGCATCGCTGATCCACTCTCCTGCCGGCCTGGAATAGG
CTCAGTGTGAGTCAACAGTTTGTGGTTGTTGTATCACCGGGAACCTCTTG
GTAGGTGACGGCTGTCTACCGCAAGGCAACCCTAAGTCATCATGTCTTGT
CTACCAGAGGGGAAGGCACTTGCGCAATACAGGTTGTAGGCGACCAGTAG
CGATATGTTGATATGTACCCTGCTGCGGCAAACGCATAAGCCGAGTAGTG
CAGAAGGAGTATTCAAGGGGAGTGGTTCGTGTTGACAGACCCTCAACAGT
ATTCAACCCACCGGTGAGTGGGTGTGGTTGGACCAAATTAATGTTTGCCC
TACCACGACACCTCTTGAGCGCGTGATTTCAGGGACGGTTTTTCTATTTC
GTTTTCCACTCATCTACTAGTTTGCCGCTCTCTTACATGTGCTCCTTTGC
TGTTGCTTCGTCTACAGCTCTTTCTCTGGCTGCCAACTTTCGGAGGGCGA
CATCGGCGATCTCAACTATTGCTTTACCACCATCGGACGAAGCGGGCTCA
GATACATGTAAGTCCCCTTACAGACCGACCATCGTTGGCACGCCAGGCTT
AGCTTTCCCACCTACGGGACCTTTGCGAAGGTGCTCTGTTTTATAACGTC
CCGTTTGTGAGCACCGACTTCAATCGACCGCATCGATGGCAAAGCGGGGA
GGGCTGTACTTGTGCCAAGATACACCAACATCCAATTACGATTTAGATTT
GCCTCATCTTTCGTAGTGTCGCCGACACAACGCGGCCAGTTTTGTGTAGC
GCGGAACCGCGATTCCCCGCAAAACAACATGTACGGCAGCGTGGCGGGGA
TTGTTGCTCGCGGCCACGCCATTGATAAACACGTACACATCGGTGTTGTA
GCAAATTTAATAAGCGGCGGTAGATGAATCCTTTGCAAAATCGACCGACC
ACACTATTCTGAATCTAGCATACCGGTAATATTTCGAATTCCAGTGAGCA
AGTTGACACGCGATATGTTGGAAAGACAACGAAGCTTCGTCGAATTTCAT
CCATAAAATCACAGCCGCAGGCATTCCGCACCTCTTGACCGCTATTCTTG
AGGCTACCTTGTTTTTTTGTGTTCCAATCAAGCTAGGAAGCACACGCGGC
CTTCTTTGGAGTCCACTAGCTAGCCTCGGCACACTGCCTGCGATCGCCAG
GAGAGTAATCCTTTACTTTGTATTGTGTTCCCCGGCGCCCCTCGTCGATT
TCCTTACCCTATTCACACGTTTCGTAAAGCAACCTCGACGACAACGACTT
CATCGCGGTACCGCCCATATTCGAGGAACTGACGGCTTTGACGCACCTGT
GAGTCACGCCCCTTGGTATCGGTATCGTTTTCGTTGCCGTCGACGCGTTG
GGAACGTGTACTTGAAGTTTGTGAAAAGATTGTGCTTTTGTCCATTTCCT
ACCCGTCGAAGAAATCGCAAAAATTATTCATGGCCAACTACATGGAATGC
CGGGCTTACATCGTACTTCCTGACGCAGTTCGGCATATGTTGATGTCCTT
CAAAGATGGGGCTGTGGTGAAGATAATGTTCGACGTCAGTCCTAGATCTA
TCAACCATCTGGAAAAGTTGGTTGTGTACCGTACTCTATCCATCGCCACG
AGAAAGCAACTTGAAATCTCACTGCGCAGCTTGTGAATAGTTTCTGTGCT
GCGTCGTTCGCCAAAAGCGTTGCGAAGATGGGGGGCGCACCTCGTCCATG
ACTGACCACCAGAGGTCGTACACGCCACGGGGTGGCAGTGGCCTTGTCCC
TTGGTCTTGTCGCCAAACCTACTCCAATCATACCTAGTCAAATTGTTTTC
CTGGGCCACGTTGTGGTCGGTCGAGGCATGCGTGTTGCAACTCTGAGCTG
GATCTTTGTTGATGCCCTTTATGGCGTCCTGTGTCTGTCCGTCCCAACGG
TGATATGTAAGCATGCGGGTGCTACGTTTAAATCGCCGTAGTAGGAAAAC
TGGACATTGCTAGTAGTGTGATATCATGCTCGATTTGCCGCTGGTTTCAT
CCACAAAACCTCCACCCCTCTCTACAACCGCAGAAATCTTGGTCGAAACG
AGATAACTTCTTTCTCGGCCGGAGATTTTGCTGGTCTCAGCGATCTCAGC
ACTCTGTAAGTGTTGTCTCCACATTTCGTGTGTTGCAATCACAATGTCGC
TCCTTGTACATACATTTCCTGCATGGCATCCTCTACGTATTCGCCCTTGA
ACGTACTGCGCAAGCATGGGACGGTGTGCCGGTTATGCGGCCCTATGTCT
AACTACCCTCAACGAATGATCTACGTGAATGGACGCGTTCGATTTTGCCC
AGTTTTTATGAATAACCCCTTCGCCCTTCTCTACAATATCACAGGTTTCT
TTATGATAACCAGATAGCTTCCTTCTCGACTGGAGACTCCGATGATCTCG
TCGGTCTCCAAACACTGTAAGCGCGGTTCAATCGTGGTTGGTCGCGGCGT
GGCCACGGAGTCTCCACCCTTGATGCGTTCCAACTTCGTGGTCTTTTCTA
AAACATGTACGTTACCGTATGCCTTGCTTGTCTATCCCTGAAAGCACAAC
AGAAACATCGAGAGACGGGCCGGTCATGCGGTGATGTGTCCAATGTGTCC
AACCGTCGTCTAAGGTGCTGGACAGTGTAAGGCGTGCGATAGCATTCTCG
ATGTGCCTTTGATTTTCTCTGCGATCCCTCCGCCCATCTCTACAATCGCA
GGAGTCTTTCTGGGAATCGGATAACTTCCCTCCCGGCTGACGCCTTCGCT
GGTCTCTCCGGTCTCGTCTATCTGTAAGCGTTGTTCAGTCGTGGATGGTC
GAGGCACGGCCATCAAGCCTCCGCCCTTCGTTTTTTCCACACGCAAGCTG
GCTTCGTGTTTTATGCCATGCGTGGTGTTCTTCGCTTGTCCATCGCTGAA
CGTTCTGCGGAAGCATGTCGGGAAGTCTGTCGATCATGCGGCCCTGTTTC
CAACCACCGCCAAGGGCACTAGACACTGGCCAGCCTGTGCAATGTTTTTG
CTTGTTTCCTCTGAAACCCCTCCGCCCTTACCAACAACTGCAGGTATATT
TTTGAGAGCGGGATATCTATCCTGGACGCTGACGCGTTTGCTGGTCTCGA
CCATCTCCTCTTCTTGTAAGCCTGAATACCTCTCTCTCCGGTTGGTTGAG
GTCAGATCACTCAGCCCCCGTTTTCACTATGTTGTTACTCGGAGCTTGCT
CCTTACACATTTCCTTTGGAGTTCCCGTGCCCCATGCCTGTTCATCGCTG
TCGGTCATACGCAATAACGCAGAGGTCGGCCGGTGATGAGAGCCAATGGC
CGACCACAGCTAAGAGTATTGGACACCCCACTGCGTGTGATGGCGTGCTC
GATCTGTCTTTTACTTTCCCCACCAACCCTCCGCCCCTCTCTACAACCGC
AGAAACATTGAAGGCAACGACATATCTTTGCTCCCGGCTGGACTTTTTGC
GGGCACCAGCGCCCTATCCTTTTTGTAAGCGTGGATCGGCCGTGGTTGGT
CGAGGCAAGACTACTAGGTCTTTTTCCGTCCTGTACTCTGGTGTATATTC
TGCTGGATCTCCCATCTCTGCCCGGCCCTGACGGTAGTACGGAAGCATGG
GAAGGTCTGCGGGTCATGCGGTGCTATGCCCGACTGACGTACGTAGTGGG
TGACCGTGGACAAGGACCTGGGTGTGAAAGCATTCTCCTACATGTGTTGT
GCATCTGCGATCCCCCCGCTCCTCTGCAAAATCTCAGCTCTCTTTCTGGA
AACGGTACGTCTTCCCTCTCGGCCGGAGCATTCAATGGTCTCGGCCATCT
CGCTTCTTTGAAGTTAACTTTCTAGATGTTTGACGTATAGCCACAAATCC
TCTTCCAACATTGAACTAGTATACATGGAGGTTTCTGCGGTGAACCTTTT
GAAAAAAGCCTTCTTTGGAGGGGTTCGGTCGGACTGCCGTTTGTTTTTGT
TTTTGCTTGGGGGGTGGTGAAATAGGGTATACCCTGGGCGTTCACGAACA
AAATCGGGTACCCTAGCTTCGGTTCTGCGCCCACGCCGCCAGAATTCATC
GCATTCTTTGCCTCCTGACGCCTCCATCCTAAGCGGACGGTGTGTGGGCA
GCATCCCAAACCTTTTTTTCGTTCGGAGACACTAAGACACAAGGTGCATA
CGGACGACTGAAACACCATCTTTACGTACCACCCGATTTTGTTCGTAAAC
CCACCTGCTATAACCCTTCTACATCTTCCGTGCCACGCAACTTGCTCTGC
TTGTGGTCTACACAAAGATTCGCCGATAGGGCGAAAATGTCGGACCCGGT
GGTTCGTGTCCATGCCTTGGCTCTCCCTCTCTCTCGCAGCCGCCCGTACC
ATACGCTCTACCTGTCTTTCGCGGGCACGCTCATGTATGCACTCAAAACA
CGCACCATGCGCACATCACGGTGCAAGCACCCTCGACCATGTCACTGGCA
CAACCGCCGATCAATCCCTTGCAGTCTCTTCGATATTTGGTTGGCCATGA
GGGGCAGCACCGAAGGCCCATGCTGTACATACATATATACATGCGTACGC
ATTTCGCTGGTCGGGCGTATCGGGTGCGACGGGAGAAGAGGTTGTGAAGA
AATAGATCAGGCAAACATAGAGGAATACCCATGAAGGACAGCGCGAGTAT
GGCCAAAACGTCATGCTTGTGCACGAGCAGTGCAGTTGCATGGCACGAAG
GCGGCAACTTGCCGATTGAGGATGCCGACTGGTGGATCTTTCTTGGATGG
TTGCGGGGAGATGGTGTTTCAGTGTCATTTCGATATTTCCGCCGGAGAGC
ACCTTTGTACAACATCGGGTGATGCGTTTTGCAAAAATGGGTATACTGCA
GTACGAATAAACCTTCAGCGAAGGAGGGAATGTAGCCTGTCGGTCTACGA
ACAAAGTCGGGTGGTCCGTGGACTTCGAGTTTCATGCGCCCGTATTTACC
CTGGTTTTGGGTGTCTGGTTGGCTACGCTGCTCTCACACCGTACGCATGG
GATGGGCGCACCAGGAGGCGAGTTCGATGCGCTCTGGCCGCGCCCGCCCG
CGTGCGAAGCTACCGAAAATTGGGGTTCCCGGGTGTTATACCCGATTTTG
TCTATTTCGCTTTTTTTGTACGATTGCGTTGTTCCGGAGGTTGTCATCCT
TGCCAACGACGCCAAAAGCTATCGGATATCCATTTCACGAGCAGCTGGTT
GCTCCAAATGCGCCCTTCATACTACCGTCAAGACGGCGCTTTGGCCTTCA
AGCCGCACCACTTTCAAACTTCTAATGGCGTTTGCCGGGAGACCTACAGA
AACACAAGGGGCCCGGACCGGTGATCCTGCGTCCGAGTTCCGTCCCTAGA
GACGTTGGACCGGTGATCCTCGTAGGCATTTTACCTTTAAAGTACTGTTA
TCAGCGCCAAAGCTGTCGCTGCGGTGCTTCAACATCTGTGGCTTAAGAGA
GACCTCGGTTACCTCCGTACCTTCAAACATTTCTGCCATGATACTCTCCA
TATCCCCCTTCGTCTCTCCCTTTACACCGTGCTCAGAAAGACCGACGTAT
GTGGTTATCAAGAAGAACCGTAGATTTTCTGGGATGATGTGCTTCCGCCA
TTCCTTTCACGTTGTTTTCATGGCCAGGAACCTCAACGGAAACCAGCTGG
GAGCAATTTCATCAGGGGTGTTCAACGGCCTTGCACAGCTGAGAGAATTG
TGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1323:6377..12129+

>mRNA_H-canaliculatus_F_contig1323.2657.1 ID=mRNA_H-canaliculatus_F_contig1323.2657.1|Name=mRNA_H-canaliculatus_F_contig1323.2657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1323:6377..12129+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGTAAACGAATGCATCGCTGATCCACTCTCCTGCCGGCCTGGAATAGG
CTCAGTGAAGTAAACGAATGCATCGCTGATCCACTCTCCTGCCGGCCTGG
AATAGGCTCAGTCTCTTTCTCTGGCTGCCAACTTTCGGAGGGCGACATCG
GCGATCTCAACTATTGCTTTACCACCATCGGACGAAGCGGGCTCAGATAC
ATCTCTTTCTCTGGCTGCCAACTTTCGGAGGGCGACATCGGCGATCTCAA
CTATTGCTTTACCACCATCGGACGAAGCGGGCTCAGATACATCAACCTCG
ACGACAACGACTTCATCGCGGTACCGCCCATATTCGAGGAACTGACGGCT
TTGACGCACCTCAACCTCGACGACAACGACTTCATCGCGGTACCGCCCAT
ATTCGAGGAACTGACGGCTTTGACGCACCTAAATCTTGGTCGAAACGAGA
TAACTTCTTTCTCGGCCGGAGATTTTGCTGGTCTCAGCGATCTCAGCACT
CTAAATCTTGGTCGAAACGAGATAACTTCTTTCTCGGCCGGAGATTTTGC
TGGTCTCAGCGATCTCAGCACTCTGTTTCTTTATGATAACCAGATAGCTT
CCTTCTCGACTGGAGACTCCGATGATCTCGTCGGTCTCCAAACACTGTTT
CTTTATGATAACCAGATAGCTTCCTTCTCGACTGGAGACTCCGATGATCT
CGTCGGTCTCCAAACACTGAGTCTTTCTGGGAATCGGATAACTTCCCTCC
CGGCTGACGCCTTCGCTGGTCTCTCCGGTCTCGTCTATCTGAGTCTTTCT
GGGAATCGGATAACTTCCCTCCCGGCTGACGCCTTCGCTGGTCTCTCCGG
TCTCGTCTATCTGTATATTTTTGAGAGCGGGATATCTATCCTGGACGCTG
ACGCGTTTGCTGGTCTCGACCATCTCCTCTTCTTGTATATTTTTGAGAGC
GGGATATCTATCCTGGACGCTGACGCGTTTGCTGGTCTCGACCATCTCCT
CTTCTTAAACATTGAAGGCAACGACATATCTTTGCTCCCGGCTGGACTTT
TTGCGGGCACCAGCGCCCTATCCTTTTTAAACATTGAAGGCAACGACATA
TCTTTGCTCCCGGCTGGACTTTTTGCGGGCACCAGCGCCCTATCCTTTTT
GAACCTCAACGGAAACCAGCTGGGAGCAATTTCATCAGGGGTGTTCAACG
GCCTTGCACAGCTGAGAGAATTGTGAGAACCTCAACGGAAACCAGCTGGG
AGCAATTTCATCAGGGGTGTTCAACGGCCTTGCACAGCTGAGAGAATTGT
GA
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