mRNA_H-canaliculatus_F_contig1323.2656.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1323.2656.1
Unique NamemRNA_H-canaliculatus_F_contig1323.2656.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1323.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1323contigH-canaliculatus_F_contig1323:233..4697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size287
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1323.2656.1prot_H-canaliculatus_F_contig1323.2656.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1323 240..4697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.716419-UTR-H-canaliculatus_F_contig1323:232..2391622929061.716419-UTR-H-canaliculatus_F_contig1323:232..239Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1323 233..239 -
1696845665.1390429-UTR-H-canaliculatus_F_contig1323:232..2391696845665.1390429-UTR-H-canaliculatus_F_contig1323:232..239Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1323 233..239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.731432-CDS-H-canaliculatus_F_contig1323:239..3901622929061.731432-CDS-H-canaliculatus_F_contig1323:239..390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 240..390 -
1696845665.1493301-CDS-H-canaliculatus_F_contig1323:239..3901696845665.1493301-CDS-H-canaliculatus_F_contig1323:239..390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 240..390 -
1622929061.7480402-CDS-H-canaliculatus_F_contig1323:1150..12261622929061.7480402-CDS-H-canaliculatus_F_contig1323:1150..1226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 1151..1226 -
1696845665.159775-CDS-H-canaliculatus_F_contig1323:1150..12261696845665.159775-CDS-H-canaliculatus_F_contig1323:1150..1226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 1151..1226 -
1622929061.7624242-CDS-H-canaliculatus_F_contig1323:4645..46971622929061.7624242-CDS-H-canaliculatus_F_contig1323:4645..4697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 4646..4697 -
1696845665.1685226-CDS-H-canaliculatus_F_contig1323:4645..46971696845665.1685226-CDS-H-canaliculatus_F_contig1323:4645..4697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1323 4646..4697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1323.2656.1

>prot_H-canaliculatus_F_contig1323.2656.1 ID=prot_H-canaliculatus_F_contig1323.2656.1|Name=mRNA_H-canaliculatus_F_contig1323.2656.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
SRAGRLALDEYPCCKQEVGGLQNAQHARGSLGLRELHSCGITWRPWEEHE
NDCGGCRKTERRRGRQHSEEGVEREEIAGYRPQQQRRRYKSK*
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mRNA from alignment at H-canaliculatus_F_contig1323:233..4697-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1323.2656.1 ID=mRNA_H-canaliculatus_F_contig1323.2656.1|Name=mRNA_H-canaliculatus_F_contig1323.2656.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4465bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1323:233..4697- (Hapterophycus canaliculatus Oshoro5f female)
TCAAGAGCAGGCCGTTTGGCTCTTGATGAATATCCCTGCTGCAAGCAAGA
AGGTATCGGCATGCGTTTGTATATGTCTTTCTGATTTTGCCGAAAGATGA
TAACGACAAAGACATCTGGCTGCGTTCTGACGCAACTCGCACGTGTGTCG
ACCCGCATGCAGCCGAGCCCGGTCCCAGCGGATGTAGCACATGCATTTGC
CAAACGTGTCACTGCCTGCTGTTGGCGGGTCATCACACCTCGAACGTTGT
GTATACCAGCGAGATGGACGCATCCAAATTCGTCAACGGGATTGTTTGAC
CGCGCCAAAACGAAAGCGCAAAAACCAGAGTGTGCACAAGGATGACAAAA
TCGACGGTGTGCCGACCAGGATGCAGCCGAGCCCGGTCCCCCCGGAAGTA
TTGCGCGTATGTGCCACATACATGTATCACTGCTGTTGGGGGATCATCAC
TCCTCGAGAGCCGCCTACCAGCGAGACAACAAGCGCAACCAAACTTCCGA
ATCTCTGCTGTTTCGTTGCTACAGCAAATTTCTCAAAGAAGGGGAGTTTT
GAAGCGAAAACGAAAACACGGAAATAGAGGAGGGTACTTTCTTGTTTCCT
TTGTTTTTTTTAAGAATCAACAACACCAAAGGAATATACGCTCCGCTGAT
ACAAAATTAATAGCGACTCATCAGGACGATTTTCTTGAATTCCTTGTACA
CTGAGGGTTCAGTGAGGTGGAGAAACATTTCATCGCTGTGTCAGACAAGA
CATGTTGGGATTACATGTACACGGCGCATGATGATACTTCCTGTGATGAT
GGGGTTTCCTGTGAGCTTTTCTTGAGACCGGAGTTGATGATTCGCTCGTC
TCGTAGGGTCGTGTGATCAGTGGAGCTGAGAAGGGTACTTGTTACCTTCG
GTTTTTTGTCTACTCTTACCTTTTTCAAACGAAGTTGTGCACAACGATGG
CGAACTCGAGACTCTCTTTCCGTGGTTTTTGCTGAGGGGTTAGATTTCAG
TTATGCTGTGCTGCTGCTGCAGGCACTCCTCCTGCTTTTTTCATTGAACG
GTATTTGTGTTGCTGTTTATTCCAGTATGATGTAAACAGTTGAATCTTCT
GCTGTTTCTCGTACATTAATAATGTGAGATCATGGTCTTTCGTTGAACTC
ACAACTGCTGAAGGATGTGTGGACTGCTTCTTTTATATATGACGGTTTCG
CAGGAGTGTAATTAAGCCATCGTGTCCACATCCTGTTAATTAAATCACGG
CCGTACAGCGACAGGGACTACTTTGCCCCCCGTCCAAGGCCTGCACGTAC
GTGCTGCAGCTATAGTGTTGCAATTATCCGTTTTAAAACTAGCATGATTA
TTCATCGATTTGCAGCCTCCAGCAGCGAAGATTCTTTCCGTGTTGTACAC
CCTGTAGCTGAACCGCTACAACCCTGAACTTATTTTATTATGAAGAAGCC
TGAGGGTGGTCCCGGACTCAATTGAATCCCACCACCTCTTGTTCCCTCTC
ATCTATAGGTGGGAGAGGACAGCACCAAGGAGGAACCCGACATTTAACTG
CGGTGTATTGGTTGTGCCTCGTCACGCCCCTTTCTTTGTGTTTCTTCAGA
TTTTAACACCCCATCTATTCCAAAGAGCATGCTGACAAAAAGCCAGAGTC
ACCTGTCCGATCGATGTCATCTTGCAATCGAATGTTTCCGATTGATTGTG
TTTATTGCCTCGTTCTTCCTCCTTCTCTTTACTTTCCTCTACGTGTGCTA
CACAATTGATTTTTGTGTGTGACTTGTCTGGGTCCGTTTTTTTCTCTCTT
CTTTTTACTCCAAAGAGGGTATACGATTTTCCGGTAGGTAGGTAGCTTGT
GACCACGGAATTACGTCTCCTGAGAGGGAGTTTTCAATGTATGTGAAGAC
AGCAGCAACAAACAAGCGTCGAGAAGAGTACCTGGTGTTCCATCGAATCC
GTCCCTGCTTGTCGGGCTCGGTTTATGTTGCGACATTCACATAAAAGAGG
TACATCGGTCGAGGGGGCCAAGAACATGTTCTTCAGGCCCAACCAAGCCA
CGGTTTTTAAATATAGGATGAAAATCAAACAATAATGCACTGCTGCTGTT
GGGCGCTCATTATTGTGTTGCATGCGCTGGCGCTGCCTCTACCAGTTAAG
CTGGGGGCGAAAAGTATTGTGACACAGAGGTTAAGACGTGGACAGTTTGC
CGCCAGAAAGTTTCGATACACCGTTCTTGTCGACATTTTCACAGCGGGTT
TTTCATTATTTTGTTCGTATCGTATAAATAATTGTGTGGAAGTATCTTCA
CACATCAAATCGCTCATGATTTTCGGCCGCCTTTTTTGTTTACAACAAAA
CCCGTAGACAGGATATTGATCTTCTGCCATCGTCGAACACGATGTACTAT
TTCATCCTTCCAGGACGTGGTCGCGCCTAAAAATGAAGAGTAGACGTTGT
ATTTAACCGTCGCACCCGATGGTCTCGAGGGGAAGTTTCGTTGGGCATCG
ACTGTTAACCCGGTGATGCCGCGTACAGAATGGCGTTCCCCCTCTTGTGA
CCACATCTTCATGTTCAAGGTTTTGCCATCGGCGGCCGTCCTGACACTTA
GCCGAATCTCAATGCGTATGGCACTAGAAACTTTAGACCGTATCTTGGTC
GTGCTTCGCGACGCTCTTCATTGCCTAGTGTACCTAGGGTTCCTTCCCGC
CGCGCCCCCGCCCCCCCCCCCCACCGGCAAGGCTCCACCTAGAGAGGCGG
CCGAAGAATCAACCTTTGCTTCAAACGGTAAATGTCTTCATCGATCCACG
CGAAGCCAAGTAGATGCCCACCTCTTCTTGAAACAACCTGTTCTTTTCAG
GACTTCCCTCCTGTGAGCCATCACAGGTCGACCCAGGACATGTACGACTT
GATCCCGTCCGTGAGAGTTTGTACGCGTGCGTGTGAACCTGACGAGGTCC
GACCAAACTTGTTTTCACGGGGCATGATCCGACCCGACCAGTCAGATTTT
TGGTCCGCTTACCCCGCCCCATGCGGTTTTGTGCCCATCTTGAAAATATT
CGACCCGACCAAATCGACGGGTCATGCCCAAGGAAATCCCTTGTTTCAAA
CTGAATATATATGCGGACGCTCATTTTGGAGGTGCCGCTGTTTTTTTTTT
GCGTGTCCCTAATGGAGATATTGTTTGTATTCCAGTCAGTGCTGTCTCAC
CGATCGGCAGATCGCACAGGGCGAGGATCAATCTACTTCTTTCTGCTGTG
TCCGTATTTTCTAACCCCTCTCGAGCCTTTCGCCTTCGAAAGACAAGCGA
TTTCACTCCTCCTGGAGATATCTCACTGAAGAATGAAGGGGGGACACATA
AATATTTTGGCTGTCTTGAGTCCGCCTGTAAATGTTGACTCCCTCGCTCG
ATTGGGCCTAAACATCGGACGTGTGGTAATTTCTTGTAATATGCACCTCC
TCTTGTCCGTACACACTGCAGTGGGTGGACTGCAAAATGCTCAGCATGCG
AGAGGGTCGCTCGGCTTGCGGGAACTACATTCGTGCGGCATTACCTGGTA
CGTGTAAGCTGCTCAGAGTACTGTCTTCACGATGTTCCCTTCAGGCTACA
GCGTAGGTCTACGACTTTATTATTTTCCTCAGCTGAAGTTTTGGTGGCTG
TAGCCAAAAAATGTGCCCAAGCCGTAGGATTTCAGGGTTATCGCATGTAT
GATGAGTGGAGCAGGAGCGGGGGAACCAAGGTATTGTCCCCTGGCTCTCT
GGCTCGTGGTCTGTTGATGATCTCTCAGTGAATGAAGAAGGCTCTAAGGT
GAACTCATCGAGCACGAGGCCAGCGATACTGGAGGAGTCCCTCGCAGATT
GTCCTCACATCCAGGTCATCTCTGGTAGAGGCTACATGGCCTACCCCCCG
GCCAACGCGTCACTCTGACCATTGATAAGTGTGGGAACTCCGAACTTGAC
CCATTATTTCACAACGAGCTAAGTGAACTGAAGGCACTGGCTCAGCGCTC
TCTTCCAACCACTTACTTGCTGATTGCCCCAAGTCGCCCATTTTTTCAGT
TTGTGGAGAATCAGCTGTGCCTCATAAACGATCAACGTGAAAGTCATCAT
GATGTTTGTCGAAAACAAGCGCTCATTTAACGACTTCGCAAGTTAGTACC
TCTCGAAGAATTAACACGCAGCAGGTCCCCTGCCACCTGATTTCATGGTT
ACAGCGCCTAGCTTTGTGGAGTATCTCAGCAACGATAATAATATCACTTT
TTCTCGGATAGCATCCCATTAATTTTCTCCCTTATACATCACGATACTCA
ACCACAGGCGCCCGTGGGAAGAACACGAGAACGATTGCGGAGGATGCAGG
AAGACAGAAAGAAGGAGAGGGAGGCAGCATAGCGAGGAGGGCGTCGAACG
GGAAGAAATAGCCGGCTACAGGCCACAGCAACAGCGTCGAAGATATAAAA
GTAAATGAGCGGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1323:233..4697-

>mRNA_H-canaliculatus_F_contig1323.2656.1 ID=mRNA_H-canaliculatus_F_contig1323.2656.1|Name=mRNA_H-canaliculatus_F_contig1323.2656.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1323:233..4697- (Hapterophycus canaliculatus Oshoro5f female)
TCAAGAGCAGGCCGTTTGGCTCTTGATGAATATCCCTGCTGCAAGCAAGA
AGTCAAGAGCAGGCCGTTTGGCTCTTGATGAATATCCCTGCTGCAAGCAA
GAAGTGGGTGGACTGCAAAATGCTCAGCATGCGAGAGGGTCGCTCGGCTT
GCGGGAACTACATTCGTGCGGCATTACCTGTGGGTGGACTGCAAAATGCT
CAGCATGCGAGAGGGTCGCTCGGCTTGCGGGAACTACATTCGTGCGGCAT
TACCTGGCGCCCGTGGGAAGAACACGAGAACGATTGCGGAGGATGCAGGA
AGACAGAAAGAAGGAGAGGGAGGCAGCATAGCGAGGAGGGCGTCGAACGG
GAAGAAATAGCCGGCTACAGGCCACAGCAACAGCGTCGAAGATATAAAAG
TAAATGAGCGCCCGTGGGAAGAACACGAGAACGATTGCGGAGGATGCAGG
AAGACAGAAAGAAGGAGAGGGAGGCAGCATAGCGAGGAGGGCGTCGAACG
GGAAGAAATAGCCGGCTACAGGCCACAGCAACAGCGTCGAAGATATAAAA
GTAAATGA
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