mRNA_H-canaliculatus_F_contig13223.2653.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13223.2653.1
Unique NamemRNA_H-canaliculatus_F_contig13223.2653.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13223.2653.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 3.330e-75
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 1 
Query:   49 GGGEDGDAAEEEGLPVLLLRELASFRERFPQRVGKHLRPDAAEAVLKHQVHQRLALIRYIHGLASGVNLSVAQLRGLWEILRSPAERELCLSFLQEGAATQKSLLGPSHTAFGDKERLFLFRELICKDVDWAGLGMPAYSCFDAFFK 489
            GG  D   AEEEGLPVLLLRELASFR RFPQRVGKHLRPDAAE VLKHQVHQRL LIRYIHGLASGVNLSVAQLRGLWEIL SPAERELCLSFLQEGA+T K  +   HTAFGDKERLFLFRELICKDV+WA LGMPAYSCFDAFFK
Sbjct:  750 GGEGDAPGAEEEGLPVLLLRELASFRARFPQRVGKHLRPDAAELVLKHQVHQRLDLIRYIHGLASGVNLSVAQLRGLWEILTSPAERELCLSFLQEGASTPKVPMDHLHTAFGDKERLFLFRELICKDVNWAELGMPAYSCFDAFFK 896
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BLAST of mRNA_H-canaliculatus_F_contig13223.2653.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 8.340e-75
Identity = 125/139 (89.93%), Postives = 129/139 (92.81%), Query Frame = 1 
Query:   73 AEEEGLPVLLLRELASFRERFPQRVGKHLRPDAAEAVLKHQVHQRLALIRYIHGLASGVNLSVAQLRGLWEILRSPAERELCLSFLQEGAATQKSLLGPSHTAFGDKERLFLFRELICKDVDWAGLGMPAYSCFDAFFK 489
            AEEEGLPVLLLRELASFR RFPQRVGKHLRPDAA+ VLKHQVHQRL LIRYIHGLASGVNLSVAQLRGLWEIL SPAERELCLSFLQEGA+T K  +   HTAFGDKERLFLFRELICKDV+WAGLGMPAYSCFDAFFK
Sbjct:  252 AEEEGLPVLLLRELASFRARFPQRVGKHLRPDAAKLVLKHQVHQRLDLIRYIHGLASGVNLSVAQLRGLWEILTSPAERELCLSFLQEGASTPKIPMDHLHTAFGDKERLFLFRELICKDVNWAGLGMPAYSCFDAFFK 390
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BLAST of mRNA_H-canaliculatus_F_contig13223.2653.1 vs. uniprot
Match: A0A4D9D1L0_9STRA (USP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.770e-14
Identity = 59/192 (30.73%), Postives = 81/192 (42.19%), Query Frame = 1 
Query:   73 AEEEGLPVLLLRELASFRER-----------------------FPQRVGKHL-------RPDAAEAVLKHQVHQRLALIRYIHGLASGVNLSVAQLRGLWEILRSPAERELCLSFLQEG---------------AATQKSLLGPSHT---------AFGDKERLFLFRELICKDVDWAGLGMPAYSCFDAFF 486
            A E  LP LL +EL +F++R                        P  V   +        P    A+L  +V  RL +IRY+H  +  V LS  QL  LW++L SPAE+EL L FL E                A T  ++  P +          AF        FR+++C+  DW GLG  AY CF+A+F
Sbjct:  827 AVENHLPELLFQELKTFKQRAVTGSVASMGSSTSCIGSPQSLSLPASVSTVVLNPSNSPTPALPTALLLDRVKMRLDVIRYVHSHSETVKLSFPQLMALWDVLDSPAEKELFLLFLSEACLPRDAGTSSSKKTAAGTGGNVTAPENCQKGKGLVPLAFSPTVMWTAFRDIVCQRADWTGLGDQAYGCFNAYF 1018
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BLAST of mRNA_H-canaliculatus_F_contig13223.2653.1 vs. uniprot
Match: M4BN22_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN22_HYAAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.930e-14
Identity = 54/147 (36.73%), Postives = 71/147 (48.30%), Query Frame = 1 
Query:   79 EEGLPVLLLRELASFRERFPQRVGKHLRPDAAEAVLKHQVHQRLALIRYIHGLASGVNLSVAQLRGLWEILRS-PAERELCLSFL--------QEGAATQK--SLLGPSHTAFGDKERLFLFRELICKDVDWAGLGMPAYSCFDAFF 486
            E GL  LL  ELA+F  R         R D      +  V  RL LI Y+H  +  + L + Q+  LW +L S PAERELCL FL        Q+G AT    +  G   +AF      ++F EL+CK  D+  LG   Y CF+ +F
Sbjct:  682 EHGLVSLLFDELAAFVAR---------RTDKQSPSYRTAVGHRLELIHYVHVKSPKLELLIPQIERLWTVLSSSPAERELCLIFLNQTSMRRNQQGGATPSINTRGGSISSAFNLDVCFYVFNELLCKQTDFRTLGCMGYKCFNTYF 819
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13223.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE3.330e-7587.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LIA1_ECTSI8.340e-7589.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9D1L0_9STRA2.770e-1430.73USP domain-containing protein n=2 Tax=Monodopsidac... [more]
M4BN22_HYAAE6.930e-1436.73Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13223contigH-canaliculatus_F_contig13223:784..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue1.5e-64
Seed eggNOG ortholog2880.D8LIA1
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-14_003720.1
Exons1
Model size490
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.4870741-CDS-H-canaliculatus_F_contig13223:783..12721622929061.4870741-CDS-H-canaliculatus_F_contig13223:783..1272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13223 784..1272 +
1696845665.0634425-CDS-H-canaliculatus_F_contig13223:783..12721696845665.0634425-CDS-H-canaliculatus_F_contig13223:783..1272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13223 784..1272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13223.2653.1prot_H-canaliculatus_F_contig13223.2653.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13223 784..1272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13223.2653.1

>prot_H-canaliculatus_F_contig13223.2653.1 ID=prot_H-canaliculatus_F_contig13223.2653.1|Name=mRNA_H-canaliculatus_F_contig13223.2653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
MEDAPAAADVAPAATAGGGEDGDAAEEEGLPVLLLRELASFRERFPQRVG
KHLRPDAAEAVLKHQVHQRLALIRYIHGLASGVNLSVAQLRGLWEILRSP
AERELCLSFLQEGAATQKSLLGPSHTAFGDKERLFLFRELICKDVDWAGL
GMPAYSCFDAFFK
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mRNA from alignment at H-canaliculatus_F_contig13223:784..1272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13223.2653.1 ID=mRNA_H-canaliculatus_F_contig13223.2653.1|Name=mRNA_H-canaliculatus_F_contig13223.2653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=489bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13223:784..1272+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGATGCTCCAGCGGCCGCAGACGTTGCGCCGGCGGCCACGGCCGG
CGGGGGCGAAGACGGCGACGCGGCGGAGGAGGAAGGGCTGCCGGTCCTGC
TGCTGCGAGAGCTCGCGTCGTTCCGAGAGAGGTTCCCGCAGCGCGTGGGG
AAGCATCTCCGGCCTGACGCCGCGGAGGCCGTCCTCAAGCACCAGGTGCA
CCAGCGGCTGGCCCTGATCCGCTACATCCACGGGCTCGCGAGCGGGGTGA
ACCTGTCGGTGGCGCAGCTGCGAGGGCTGTGGGAGATCCTGCGCTCGCCG
GCGGAGCGCGAGCTGTGCCTGTCGTTCCTGCAGGAGGGCGCGGCCACCCA
GAAGTCTCTCCTGGGCCCCTCCCACACGGCGTTTGGAGACAAGGAGCGGC
TGTTCCTCTTCAGAGAGCTGATCTGCAAAGACGTGGACTGGGCGGGGCTG
GGCATGCCGGCCTACTCTTGCTTCGACGCCTTCTTCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13223:784..1272+

>mRNA_H-canaliculatus_F_contig13223.2653.1 ID=mRNA_H-canaliculatus_F_contig13223.2653.1|Name=mRNA_H-canaliculatus_F_contig13223.2653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13223:784..1272+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGATGCTCCAGCGGCCGCAGACGTTGCGCCGGCGGCCACGGCCGG
CGGGGGCGAAGACGGCGACGCGGCGGAGGAGGAAGGGCTGCCGGTCCTGC
TGCTGCGAGAGCTCGCGTCGTTCCGAGAGAGGTTCCCGCAGCGCGTGGGG
AAGCATCTCCGGCCTGACGCCGCGGAGGCCGTCCTCAAGCACCAGGTGCA
CCAGCGGCTGGCCCTGATCCGCTACATCCACGGGCTCGCGAGCGGGGTGA
ACCTGTCGGTGGCGCAGCTGCGAGGGCTGTGGGAGATCCTGCGCTCGCCG
GCGGAGCGCGAGCTGTGCCTGTCGTTCCTGCAGGAGGGCGCGGCCACCCA
GAAGTCTCTCCTGGGCCCCTCCCACACGGCGTTTGGAGACAAGGAGCGGC
TGTTCCTCTTCAGAGAGCTGATCTGCAAAGACGTGGACTGGGCGGGGCTG
GGCATGCCGGCCTACTCTTGCTTCGACGCCTTCTTCAAGATGGAGGATGC
TCCAGCGGCCGCAGACGTTGCGCCGGCGGCCACGGCCGGCGGGGGCGAAG
ACGGCGACGCGGCGGAGGAGGAAGGGCTGCCGGTCCTGCTGCTGCGAGAG
CTCGCGTCGTTCCGAGAGAGGTTCCCGCAGCGCGTGGGGAAGCATCTCCG
GCCTGACGCCGCGGAGGCCGTCCTCAAGCACCAGGTGCACCAGCGGCTGG
CCCTGATCCGCTACATCCACGGGCTCGCGAGCGGGGTGAACCTGTCGGTG
GCGCAGCTGCGAGGGCTGTGGGAGATCCTGCGCTCGCCGGCGGAGCGCGA
GCTGTGCCTGTCGTTCCTGCAGGAGGGCGCGGCCACCCAGAAGTCTCTCC
TGGGCCCCTCCCACACGGCGTTTGGAGACAAGGAGCGGCTGTTCCTCTTC
AGAGAGCTGATCTGCAAAGACGTGGACTGGGCGGGGCTGGGCATGCCGGC
CTACTCTTGCTTCGACGCCTTCTTCAAG
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