mRNA_H-canaliculatus_F_contig13219.2647.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13219.2647.1
Unique NamemRNA_H-canaliculatus_F_contig13219.2647.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: D7FYI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI2_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 4.120e-109
Identity = 170/189 (89.95%), Postives = 178/189 (94.18%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            QAIVTGRR FFYSYDV TGKV+KIPR+FSSGR EKH+ETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRY+LAS ADADVYKFDIRSRRCVLRFFNEGGT TSS+A+ G  SSS QR LTAVGSDSGVVNVYDAD+LETGKRV RPSPLKAVMSLTTPVTTTKFSPDGQ+
Sbjct:   90 QAIVTGRRSFFYSYDVVTGKVLKIPRVFSSGRTEKHLETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNEGGTCTSSLASKGPTSSSPQR-LTAVGSDSGVVNVYDADALETGKRVLRPSPLKAVMSLTTPVTTTKFSPDGQM 277          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.190e-103
Identity = 167/189 (88.36%), Postives = 176/189 (93.12%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            QAIVTGRR FFYSYDVATGKV+KIPR+FSSGR EKH+ETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRY+LAS ADADVYKFDIRSRRCVLRFFNEGGT TSS+A  G  SSS QR LTAVGSDSGVVNVY+ D+LETGKR+ RPSPLKAVMSLTTPVTTT FSPDGQ+
Sbjct:  322 QAIVTGRRSFFYSYDVATGKVLKIPRVFSSGRTEKHLETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNEGGTCTSSLAVKGPTSSSPQR-LTAVGSDSGVVNVYNDDALETGKRILRPSPLKAVMSLTTPVTTTLFSPDGQM 509          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A835Z2C0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.830e-54
Identity = 98/194 (50.52%), Postives = 132/194 (68.04%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSS-GRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKR----VFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            Q I++G +P FY YDV +G V ++P I ++ G+A+  +  FA SP+G+W+AF  S GY++L+S+KTKQWAADFKLN +  A+ FSPDSRY+LAS  DA+VYKFD+R  RCV R +NEGGT T+ +      S        AVGS+SGVVN+YD+ +          V+RP PL A+M+LTTP T  KF+ D QV
Sbjct:  139 QVILSGDKPHFYYYDVQSGVVQRVPSIRNAAGKAQSTLAKFALSPNGEWIAFAASAGYIMLVSAKTKQWAADFKLNCSVEALVFSPDSRYILASGRDAEVYKFDVRHSRCVQRMYNEGGTGTTGL----DISPPQPHRYMAVGSESGVVNIYDSVAATAASAGSIGVYRPKPLHAIMNLTTPATIVKFNSDSQV 328          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A7S1CWG3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWG3_CYCTE)

HSP 1 Score: 161 bits (408), Expect = 2.890e-45
Identity = 88/187 (47.06%), Postives = 125/187 (66.84%), Query Frame = 1
Query:    7 IVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            +V+GRRPFFY YD   GK+  +PRI   GR EK +E FAASPDG+ +AF+G+ GY++L+ +K+KQW AD K+N +  AV F+PDS  LL+S +D DVY++D+R+RRCV RF NE GT  S++A +        R   AVG++SGVVN+Y        +     +PLK++M L T    ++F+ DGQ+
Sbjct:  106 VVSGRRPFFYIYDSVAGKLDLVPRIM--GREEKSLERFAASPDGRTIAFVGNDGYIILVDAKSKQWMADLKMNGSVRAVAFTPDSECLLSSGSDGDVYRWDLRTRRCVERFSNEDGTIVSTLAVS--------RKHLAVGAESGVVNLYQE------RAASERNPLKSIMHLHTSNDFSRFNHDGQI 276          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: W7T4E2_9STRA (U3 small nucleolar rna-associated protein 18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4E2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.270e-44
Identity = 94/200 (47.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSL-------ETGKRVFRPS----PLKAVMSLTTPVTTTKFSPDGQV 567
            + +V+GRRPFFY +D+  G   ++PR+   GR EK +E F ASPDGQWLAF G  GYV+L+ +++KQWA +FK+N TA A+ FS D R+L+AS  DA VY++D+RSRRC+ RF NEGGT TS++A       +S  ML AVG++SGVVN+Y+ +++       E G   +  +    P KA+  L T V T  F+ DG +
Sbjct:  361 EVVVSGRRPFFYWHDLEAGASSRVPRLM--GREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALA-------ASAGML-AVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGML 550          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A7S3QBK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBK5_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.150e-43
Identity = 85/187 (45.45%), Postives = 128/187 (68.45%), Query Frame = 1
Query:    7 IVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            +V+GRRPFFY YD+ +GK+ K+PRI   GR EK +E F  SPDG  +AFIG+ GY++L+ +K+K W ADFK+N +A AV+FSP   ++++S +D DVY++D+RS++CV +F N+ GT TS ++ T           TAVG++SGVVN+Y   +    KR    +P+K++M+L T +   KF+P G +
Sbjct:  378 VVSGRRPFFYIYDMISGKIDKVPRI--QGRKEKSLEKFTTSPDGSLIAFIGNDGYIILVEAKSKMWVADFKMNGSARAVSFSPCGDFIISSGSDGDVYRWDLRSKKCVDKFQNQDGTITSFVSATS--------RFTAVGAESGVVNLYHDRAPAFKKR----TPVKSIMNLQTSIDHMKFNPTGDI 550          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A7S2GVY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVY7_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.110e-43
Identity = 90/189 (47.62%), Postives = 127/189 (67.20%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            + IV+GRRPFFY YD   G V K+ ++  +GR+++ +E   ASPD + +AF  + GYV+L  ++TKQW+ +FK+N TA ++++SP SRYLLAS  DA+VY +D+R  RCV  + NEGGT TS+MA T        ++L AV S+SGVVN++D      G     P P +AVM+LTTPV T  F+ DGQ+
Sbjct:  254 EVIVSGRRPFFYVYDAINGDVRKVGKL--AGRSDRSLEKAWASPDQKMVAFTANNGYVVLADARTKQWSQEFKINGTARSLSWSPCSRYLLASGGDAEVYTYDLRRSRCVSHWLNEGGTVTSAMACT-------DKVL-AVASESGVVNIFD--HAFPGPSSANPKPSRAVMNLTTPVETLTFNHDGQL 430          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A7R9UCP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.770e-39
Identity = 90/203 (44.33%), Postives = 126/203 (62.07%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTG-----SASSSSQRMLTAVGSDSGVVNVYDADSLET-GKRV--------FRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            +A +  RRPFFY  DV +G+  ++P +   GR +K +ETFAASPDG+ LAF+G+ GYVLL  ++TK    D K+N TA +VTFS DS  LL S  DADVY +D+RS+ C+ R+ NEGGT TS++  T      +         T VGS+SGVVNVYD   ++  G+RV         +PSP +++++L T + T   + D QV
Sbjct:  276 KACLVSRRPFFYMLDVESGQAQRVPGLL--GRKDKSLETFAASPDGRMLAFVGNDGYVLLADTRTKALVWDVKMNGTARSVTFSADSTRLLTSGGDADVYTWDLRSQVCLHRYANEGGTVTSALLCTNRTEGWTPGEPGSNGFTLVGSESGVVNVYDTHRVDVVGQRVSTAAVPQLMQPSPHRSILNLRTTIDTVAATRDAQV 476          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: B5Y3P6_PHATC (Anthranilate synthase. anthranilate synthetase. chorismate lyase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3P6_PHATC)

HSP 1 Score: 147 bits (371), Expect = 5.590e-39
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = 1
Query:    7 IVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKR------VFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            +V+GRR FFY YD   GK+  IP+I   GR E+ +E    SPDG+ +AF+G+ GY++L  +  KQW AD K++ +  A+TF+PD  Y+LAS +D ++Y++D+R+RRCV RF N+ GT TS +A       +S R L AVG++SGVVN++   S+  G R      V   +P+K++++L T     +F+ DGQ+
Sbjct:  191 VVSGRRSFFYIYDTVAGKLELIPKIL--GREERSLEKCFPSPDGRTIAFVGNDGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFTNQDGTITSYLA-------ASSRHL-AVGAESGVVNMFSEHSM--GYRAVGHVVVSERNPMKSILNLHTSADMVRFNGDGQI 371          
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Match: A0A6P8I2R9_ACTTE (U3 small nucleolar RNA-associated protein 18 homolog isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I2R9_ACTTE)

HSP 1 Score: 147 bits (370), Expect = 2.160e-38
Identity = 81/189 (42.86%), Postives = 117/189 (61.90%), Query Frame = 1
Query:    1 QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVYKFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNVYDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV 567
            Q I+T RR +FY YD+  GKV++IP I   GR EK++E F  SPDG  L F+G  GY++L+SS+TKQW  + K+N T  AVTFS D  ++ ++ +D +VY +D+ +R C+ +F ++G    +S+A      +S      A GSDSGVVNVYD       K    P PLK+V ++TTPV  T F+   ++
Sbjct:  259 QVIMTSRRKYFYVYDMIKGKVIRIPHI--RGRCEKNLEKFQVSPDGSHLVFLGDNGYMMLVSSRTKQWIGNLKMNGTVGAVTFSADGSHMFSTGSDGEVYIWDMNTRTCLHKFTDDGCLMGTSLA------ASKDGQYLACGSDSGVVNVYDNKCFNQSK----PKPLKSVTNITTPVDGTLFNSSSEI 435          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13219.2647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI2_ECTSI4.120e-10989.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH1_9PHAE1.190e-10388.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2C0_9STRA5.830e-5450.52WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1CWG3_CYCTE2.890e-4547.06Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7T4E2_9STRA2.270e-4447.00U3 small nucleolar rna-associated protein 18 n=2 T... [more]
A0A7S3QBK5_9STRA1.150e-4345.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2GVY7_9STRA9.110e-4347.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UCP6_9STRA2.770e-3944.33Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
B5Y3P6_PHATC5.590e-3942.49Anthranilate synthase. anthranilate synthetase. ch... [more]
A0A6P8I2R9_ACTTE2.160e-3842.86U3 small nucleolar RNA-associated protein 18 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13219contigH-canaliculatus_F_contig13219:123..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.2e-87
Seed eggNOG ortholog2880.D7FYI2
Preferred nameUTP18
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11422,ko:K14553
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03008,map00310,map03008
GOsGO:0000003,GO:0000151,GO:0000462,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007405,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0017145,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031090,GO:0031461,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042078,GO:0042254,GO:0042274,GO:0042585,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0046483,GO:0048132,GO:0048468,GO:0048477,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061351,GO:0070013,GO:0071704,GO:0071840,GO:0072089,GO:0080008,GO:0090304,GO:0098722,GO:0098728,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2055@1,KOG2055@2759
EC2.1.1.43
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_004350.2
Exons4
Model size567
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13219.2647.1prot_H-canaliculatus_F_contig13219.2647.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13219 123..2401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.5853248-CDS-H-canaliculatus_F_contig13219:122..2881622929060.5853248-CDS-H-canaliculatus_F_contig13219:122..288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 123..288 +
1696845664.5587177-CDS-H-canaliculatus_F_contig13219:122..2881696845664.5587177-CDS-H-canaliculatus_F_contig13219:122..288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 123..288 +
1622929060.6029668-CDS-H-canaliculatus_F_contig13219:806..9881622929060.6029668-CDS-H-canaliculatus_F_contig13219:806..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 807..988 +
1696845664.5716996-CDS-H-canaliculatus_F_contig13219:806..9881696845664.5716996-CDS-H-canaliculatus_F_contig13219:806..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 807..988 +
1622929060.6177742-CDS-H-canaliculatus_F_contig13219:1613..17361622929060.6177742-CDS-H-canaliculatus_F_contig13219:1613..1736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 1614..1736 +
1696845664.5811112-CDS-H-canaliculatus_F_contig13219:1613..17361696845664.5811112-CDS-H-canaliculatus_F_contig13219:1613..1736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 1614..1736 +
1622929060.6329207-CDS-H-canaliculatus_F_contig13219:2305..24011622929060.6329207-CDS-H-canaliculatus_F_contig13219:2305..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 2306..2401 +
1696845664.5920086-CDS-H-canaliculatus_F_contig13219:2305..24011696845664.5920086-CDS-H-canaliculatus_F_contig13219:2305..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13219 2306..2401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13219.2647.1

>prot_H-canaliculatus_F_contig13219.2647.1 ID=prot_H-canaliculatus_F_contig13219.2647.1|Name=mRNA_H-canaliculatus_F_contig13219.2647.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
QAIVTGRRPFFYSYDVATGKVVKIPRIFSSGRAEKHVETFAASPDGQWLA
FIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYLLASSADADVY
KFDIRSRRCVLRFFNEGGTSTSSMATTGSASSSSQRMLTAVGSDSGVVNV
YDADSLETGKRVFRPSPLKAVMSLTTPVTTTKFSPDGQV
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mRNA from alignment at H-canaliculatus_F_contig13219:123..2401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13219.2647.1 ID=mRNA_H-canaliculatus_F_contig13219.2647.1|Name=mRNA_H-canaliculatus_F_contig13219.2647.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2279bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13219:123..2401+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGATAGTCACGGGCAGGCGCCCCTTCTTCTACTCCTACGACGTGGC CACCGGCAAGGTGGTAAAAATTCCAAGAATTTTTTCGTCCGGGAGGGCTG AAAAGCACGTAGAAACCTTCGCGGCGTCGCCGGACGGACAATGGCTGGCC TTCATCGGGAGCGGAGGTGAGCTGTCGGGTTTCTGCGCGATGCCCCTGCC TTTCGGCAAGCGGATGGGGTTTGCTAAGCCGTGGCGTCCCTTATTTGCTG CACCAATACGGAACCGAGTCGCGGGGGAAGGGAGGCAGCATGCGAAACGG ACTAGATCTGGACGGCTTGTGGTTGTGTGTGCCTGTGTGGCTTGATGCCC CCGCGTTTCCGTTCGCAACGCTATCTTGCCCATGCGGCGACCGCGGTGGG CAATTTGAGCGGTACTGCCTCCGCTGCTGTTGCTGGAGGTCTCCCCCTTT GCTCCCGTCGGGACTCGGGGTGCATCCGGTCACGTGACTGCTGCGTCGCC CGGGTGCTGACCCCAAACCACGCAAAATATCTGCTGCGACTGATGTCGAC TCTACACGTTGCCCTTGTCCATGCGCCACGTCTCCTCTTGCCCTTTTGCC GATTCTTTTCGCCTGGGTGGATCGACGATACCAAAAACACAAAAATGCAC CAAACGACGAACAAAAAAAATCATTCGGTCGAAGGCTACGTGCTCCTGCT TTCGAGCAAGACCAAGCAGTGGGCCGCGGACTTCAAGCTCAACTCTACCG CCACGGCGGTCACCTTCTCTCCGGACAGCCGCTACCTGCTCGCCTCGAGT GCCGACGCCGACGTCTACAAGTTCGATATCCGCTCCCGCCGCTGCGTGCT CCGCTTCTTCAACGAGGTTTGGCGGGACGGTTCCGGGGCCTTCGTGTGTG GCTGAACGTGTGTGTGTGTGTGTGCCTTGAAATCAGCCTTTCGGCGGTGG GTGATGTCCGCGGCGGGATGGACCGCGGGTGCGTTGTACGCGGTGCATCG TGCACCGCGGTTGCTCCACTTTTTCTTGTTCAAATATTTTTCAGAGATAT CGGGGTCTCGGCGATGTGTCGTGACTTCTTGTCTTGAAGTCGCGGCGCCC CTTTTTTGCGCCCGCTCTCGCACCGCGCCCTCCGTCGAAACTCGATGATC CGACGATTTCCCCCACCTTCCAAAAAGGCGGCAGTAGACTTTCCAACTGG TCAATCAGGCCCCGAGGCCCATCCATCAGCTGCGTGTCGGTCGCCCATGA TCCACACGTTTGTGTGTTGGTGCAGATGATGGCCAGTCCTTGTCACACAC CTCTTCGTGGGTTGTGTGGCATACACCACATTTTTGTTTCTTTCCTTGAA GAGACTGCCCATCTTTGAACACCGGTCGTCGTCACGGCCGTTGTTCGCGC GCGTGTGCTTGTTGTTTAATTTTCCCCGACACCCCTTGATGCGATGCGGC GCGATGCGATCTAATGTGCTTTCGCCCTCTTGTTGCCTCAGGGCGGTACG AGCACGAGCAGCATGGCCACGACGGGGTCGGCGTCTTCGTCCTCGCAGAG GATGCTCACGGCCGTCGGCAGCGACAGCGGAGTGGTGAACGTGTACGACG CCGATTCCCTCGAGGTGAGGATTTGGATTCGGAGGGGGAGGGGGGCACCC ACGTGCCGAGACGGTCGGCCGGTCGGTGCGGCGTGCGGTAGCTCGTCGCC TAGCACGCCCTCGCCACCTGCTTCCTTCCTTCTTGCGACTCGATATCGTG TTTGCTTTTTCTTCCCTCGCGTGTAGCCAAAGGGTCCACCCGCAGGAACA GCTGGATCAACCATCCCTCTCGCTCACAAAAATGTCCGGGATTCGTCGAT GGTGGTTGTAGGTCTGGTGGGTGCGTGTGAAACTGCCTGCGTGTAGGCTT CCGGTAGCCCTTCGCTGGCTGGCCTACCCTGTCGCACCCGCGGGATCGAT CAACGCAGAAGATGAAGCGGAGTTGTCATTTTTGTGAGCCCCATGCGTCT TCTTCAGACCCTGTAGACTCCACACGGTTACAGCTCCGGGTGCTACGTTC CAAAGGGCGGGCGCACGGGCCGCTCGCGGATGATTTTCGTGTCATCTTCT CCGTGCTCGCCCCTCCCGCCCTCTCTTTGTTTCCGGCGTCTGTCTCCTCG CACACAACTTTCTTTTTTTTTGGCCGAGAGAAGACGGGCAAAAGAGTGTT TCGGCCGTCGCCGCTCAAGGCTGTGATGAGCCTCACGACCCCGGTTACCA CCACCAAGTTCAGCCCGGATGGACAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13219:123..2401+

>mRNA_H-canaliculatus_F_contig13219.2647.1 ID=mRNA_H-canaliculatus_F_contig13219.2647.1|Name=mRNA_H-canaliculatus_F_contig13219.2647.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13219:123..2401+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGATAGTCACGGGCAGGCGCCCCTTCTTCTACTCCTACGACGTGGC
CACCGGCAAGGTGGTAAAAATTCCAAGAATTTTTTCGTCCGGGAGGGCTG
AAAAGCACGTAGAAACCTTCGCGGCGTCGCCGGACGGACAATGGCTGGCC
TTCATCGGGAGCGGAGCAGGCGATAGTCACGGGCAGGCGCCCCTTCTTCT
ACTCCTACGACGTGGCCACCGGCAAGGTGGTAAAAATTCCAAGAATTTTT
TCGTCCGGGAGGGCTGAAAAGCACGTAGAAACCTTCGCGGCGTCGCCGGA
CGGACAATGGCTGGCCTTCATCGGGAGCGGAGGCTACGTGCTCCTGCTTT
CGAGCAAGACCAAGCAGTGGGCCGCGGACTTCAAGCTCAACTCTACCGCC
ACGGCGGTCACCTTCTCTCCGGACAGCCGCTACCTGCTCGCCTCGAGTGC
CGACGCCGACGTCTACAAGTTCGATATCCGCTCCCGCCGCTGCGTGCTCC
GCTTCTTCAACGAGGCTACGTGCTCCTGCTTTCGAGCAAGACCAAGCAGT
GGGCCGCGGACTTCAAGCTCAACTCTACCGCCACGGCGGTCACCTTCTCT
CCGGACAGCCGCTACCTGCTCGCCTCGAGTGCCGACGCCGACGTCTACAA
GTTCGATATCCGCTCCCGCCGCTGCGTGCTCCGCTTCTTCAACGAGGGCG
GTACGAGCACGAGCAGCATGGCCACGACGGGGTCGGCGTCTTCGTCCTCG
CAGAGGATGCTCACGGCCGTCGGCAGCGACAGCGGAGTGGTGAACGTGTA
CGACGCCGATTCCCTCGAGGGCGGTACGAGCACGAGCAGCATGGCCACGA
CGGGGTCGGCGTCTTCGTCCTCGCAGAGGATGCTCACGGCCGTCGGCAGC
GACAGCGGAGTGGTGAACGTGTACGACGCCGATTCCCTCGAGACGGGCAA
AAGAGTGTTTCGGCCGTCGCCGCTCAAGGCTGTGATGAGCCTCACGACCC
CGGTTACCACCACCAAGTTCAGCCCGGATGGACAGGTGACGGGCAAAAGA
GTGTTTCGGCCGTCGCCGCTCAAGGCTGTGATGAGCCTCACGACCCCGGT
TACCACCACCAAGTTCAGCCCGGATGGACAGGTG
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