mRNA_H-canaliculatus_F_contig13212.2646.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13212.2646.1
Unique NamemRNA_H-canaliculatus_F_contig13212.2646.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13212.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13212contigH-canaliculatus_F_contig13212:1133..2310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1179
Cds size612
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.5153725-UTR-H-canaliculatus_F_contig13212:1132..16981622929060.5153725-UTR-H-canaliculatus_F_contig13212:1132..1698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13212 1133..1698 +
1696845664.5306568-UTR-H-canaliculatus_F_contig13212:1132..16981696845664.5306568-UTR-H-canaliculatus_F_contig13212:1132..1698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13212 1133..1698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.5394797-CDS-H-canaliculatus_F_contig13212:1698..23101622929060.5394797-CDS-H-canaliculatus_F_contig13212:1698..2310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13212 1699..2310 +
1696845664.5463865-CDS-H-canaliculatus_F_contig13212:1698..23101696845664.5463865-CDS-H-canaliculatus_F_contig13212:1698..2310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13212 1699..2310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13212.2646.1prot_H-canaliculatus_F_contig13212.2646.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13212 1699..2310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13212.2646.1

>prot_H-canaliculatus_F_contig13212.2646.1 ID=prot_H-canaliculatus_F_contig13212.2646.1|Name=mRNA_H-canaliculatus_F_contig13212.2646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
MVRMKLWWKMPRSKCSSRQRTQHARGFRSCLGGSGQLLDYISRVYRVRRL
TRKDMGTVLRRRNCERASSLDPSFRGIGGIWNHFGHVPDQLYLSAITLQS
HTSRGYKSDAFPVHPTMHDTLQGGCCKLMFRSRFIWKVKVFPKQQHWRKS
SRLCARPAAMLAYHLRESIYQLYRRTCDPGSMFLLTHEPGRPTGSPMSSH
SSRW
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mRNA from alignment at H-canaliculatus_F_contig13212:1133..2310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13212.2646.1 ID=mRNA_H-canaliculatus_F_contig13212.2646.1|Name=mRNA_H-canaliculatus_F_contig13212.2646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1178bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13212:1133..2310+ (Hapterophycus canaliculatus Oshoro5f female)
ACAGAACGCACGTTGCAAGACCGGTGGAGGGCTACACAACGCGTGATTGG
CTGCCTCGGTTGACTCACGCACTTTTTTTGGTGAACAGGTATGGAATGTG
GCACGCTTTCGATTCTCGTGTAGAACCGTCCGTCCGTCCGTCCGTCCGAT
CTTCCACCTCCTTCCTTGTTACCCGAAGTCGACAGAGTCCTAGCGCTTTC
GTTGCATCCCTCACATGTAACGGCGCAAGCTCCCGGTCCGAAGTACAGCT
GTGTTTTACTCTCGAGAGCAACAAGGTCCGAGTTTCGAGATTACCGCTTG
TTGTTGACGATGCTAAACTCCCCGCGTATGGCGCACTTGCCTGGGGCGTT
TACGCAGCAACCCCCCTCCCGCCAGGAGGCCCCCAGGAGGCCCTCGGGAG
AGGTTCGGGAGGCCCGAGAGGGCTCCGGGATGACCACCCGAAGCCGCTCC
CCGCCGTGTAGGGGTCGCCGGAGGCGATTTACTTCTGTGTTTCCTTTCTC
CGTTATTGTGACCTCGGATAACCTACTACGTACACACGGTGGTGTGAGAC
GGAATCTTGCAACTTGATGGTCAGGATGAAGTTATGGTGGAAGATGCCGA
GGTCAAAATGCAGCAGTCGACAAAGGACGCAGCACGCACGTGGTTTCCGC
TCCTGTCTCGGGGGTTCGGGGCAGTTGCTTGATTATATTTCACGTGTGTA
TCGTGTGCGGCGTTTGACGCGGAAGGACATGGGTACAGTACTTCGAAGAA
GGAATTGTGAGAGAGCCAGCAGTCTCGACCCTTCATTTCGCGGAATCGGA
GGAATCTGGAACCATTTCGGGCATGTTCCGGACCAGCTCTATCTATCTGC
GATTACCCTCCAATCACACACAAGCAGGGGATACAAGTCCGACGCGTTCC
CTGTCCATCCCACGATGCACGATACGCTACAAGGTGGATGCTGTAAACTC
ATGTTTCGATCTAGATTTATTTGGAAGGTTAAAGTGTTTCCTAAGCAGCA
ACACTGGCGCAAATCCTCTCGGCTGTGCGCCAGGCCCGCCGCCATGCTCG
CCTACCATTTACGGGAAAGCATATACCAGCTATATCGGCGAACATGTGAC
CCCGGAAGCATGTTCTTGCTCACGCACGAGCCAGGCCGGCCAACGGGCTC
TCCTATGTCTTCTCACAGCAGTAGGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13212:1133..2310+

>mRNA_H-canaliculatus_F_contig13212.2646.1 ID=mRNA_H-canaliculatus_F_contig13212.2646.1|Name=mRNA_H-canaliculatus_F_contig13212.2646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13212:1133..2310+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCAGGATGAAGTTATGGTGGAAGATGCCGAGGTCAAAATGCAGCAG
TCGACAAAGGACGCAGCACGCACGTGGTTTCCGCTCCTGTCTCGGGGGTT
CGGGGCAGTTGCTTGATTATATTTCACGTGTGTATCGTGTGCGGCGTTTG
ACGCGGAAGGACATGGGTACAGTACTTCGAAGAAGGAATTGTGAGAGAGC
CAGCAGTCTCGACCCTTCATTTCGCGGAATCGGAGGAATCTGGAACCATT
TCGGGCATGTTCCGGACCAGCTCTATCTATCTGCGATTACCCTCCAATCA
CACACAAGCAGGGGATACAAGTCCGACGCGTTCCCTGTCCATCCCACGAT
GCACGATACGCTACAAGGTGGATGCTGTAAACTCATGTTTCGATCTAGAT
TTATTTGGAAGGTTAAAGTGTTTCCTAAGCAGCAACACTGGCGCAAATCC
TCTCGGCTGTGCGCCAGGCCCGCCGCCATGCTCGCCTACCATTTACGGGA
AAGCATATACCAGCTATATCGGCGAACATGTGACCCCGGAAGCATGTTCT
TGCTCACGCACGAGCCAGGCCGGCCAACGGGCTCTCCTATGTCTTCTCAC
AGCAGTAGGTGGATGGTCAGGATGAAGTTATGGTGGAAGATGCCGAGGTC
AAAATGCAGCAGTCGACAAAGGACGCAGCACGCACGTGGTTTCCGCTCCT
GTCTCGGGGGTTCGGGGCAGTTGCTTGATTATATTTCACGTGTGTATCGT
GTGCGGCGTTTGACGCGGAAGGACATGGGTACAGTACTTCGAAGAAGGAA
TTGTGAGAGAGCCAGCAGTCTCGACCCTTCATTTCGCGGAATCGGAGGAA
TCTGGAACCATTTCGGGCATGTTCCGGACCAGCTCTATCTATCTGCGATT
ACCCTCCAATCACACACAAGCAGGGGATACAAGTCCGACGCGTTCCCTGT
CCATCCCACGATGCACGATACGCTACAAGGTGGATGCTGTAAACTCATGT
TTCGATCTAGATTTATTTGGAAGGTTAAAGTGTTTCCTAAGCAGCAACAC
TGGCGCAAATCCTCTCGGCTGTGCGCCAGGCCCGCCGCCATGCTCGCCTA
CCATTTACGGGAAAGCATATACCAGCTATATCGGCGAACATGTGACCCCG
GAAGCATGTTCTTGCTCACGCACGAGCCAGGCCGGCCAACGGGCTCTCCT
ATGTCTTCTCACAGCAGTAGGTGG
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