mRNA_H-canaliculatus_F_contig13205.2640.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13205.2640.1
Unique NamemRNA_H-canaliculatus_F_contig13205.2640.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13205.2640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13205contigH-canaliculatus_F_contig13205:1591..2279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size691
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.9230306-CDS-H-canaliculatus_F_contig13205:1590..19411622929059.9230306-CDS-H-canaliculatus_F_contig13205:1590..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 1591..1941 +
1696845664.2369814-CDS-H-canaliculatus_F_contig13205:1590..19411696845664.2369814-CDS-H-canaliculatus_F_contig13205:1590..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 1591..1941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.9427679-UTR-H-canaliculatus_F_contig13205:1941..22791622929059.9427679-UTR-H-canaliculatus_F_contig13205:1941..2279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 1942..2279 +
1696845664.246683-UTR-H-canaliculatus_F_contig13205:1941..22791696845664.246683-UTR-H-canaliculatus_F_contig13205:1941..2279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 1942..2279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13205.2640.1prot_H-canaliculatus_F_contig13205.2640.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13205 1591..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13205.2640.1

>prot_H-canaliculatus_F_contig13205.2640.1 ID=prot_H-canaliculatus_F_contig13205.2640.1|Name=mRNA_H-canaliculatus_F_contig13205.2640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
GDEKQEESHPSIEVVLVALGLVRTRAVLVCGPLSNTRPITNVAKAQTSGD
RPTLLGTHPVRFSLPFSLSLSLEGLPTSDPGVDLFFCFSRRAGSRLSPAV
TLGFFSFCRREPWSVQ*
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mRNA from alignment at H-canaliculatus_F_contig13205:1591..2279+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13205.2640.1 ID=mRNA_H-canaliculatus_F_contig13205.2640.1|Name=mRNA_H-canaliculatus_F_contig13205.2640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=689bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13205:1591..2279+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGATGAGAAACAAGAGGAATCCCACCCCAGCATCGAGGTTGTGCTCGT
TGCCCTTGGGCTTGTTCGTACGCGTGCTGTGCTGGTTTGCGGACCGCTTT
CGAACACACGCCCAATAACCAACGTGGCCAAGGCCCAAACGAGCGGAGAT
CGACCTACATTGCTGGGGACACATCCCGTTCGGTTCAGCCTGCCTTTCTC
TCTCTCCCTCTCTCTCGAGGGTCTACCGACGTCTGACCCAGGCGTCGACC
TTTTCTTCTGCTTCAGTCGGCGAGCGGGCTCTCGGCTGTCGCCCGCAGTG
ACGCTTGGTTTTTTTAGTTTTTGCCGGAGAGAGCCGTGGTCGGTACAGTA
GTAACCATCGTCCCGAGAGAAGGCGGTGGCTCTTGCCACAAATCCCACCA
AGCAGGGGTGAGGGATAGACGGTCGAGCCCAACACCGCGATCAAGCCACT
CTCCTCAGCAGCTGCTGCCCCCAGAAAGACCGACTCCGACTGCATCAAGC
GGATGAAGATTTCCCGTTCGACGGGATACAACAGCGCTCTCATAGTTCTG
CCACACTCCGCAGCCATCGAGTTCTACTGTTGACTCCAATCATAGATGGA
AGGCTTATCCGCATTGCTCTGCGTTGCTTTTATTCCGGGATGGGTCGCTG
TCTCGACGTGAGAAGCTCAGAAAGTACATGTATCTCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13205:1591..2279+

>mRNA_H-canaliculatus_F_contig13205.2640.1 ID=mRNA_H-canaliculatus_F_contig13205.2640.1|Name=mRNA_H-canaliculatus_F_contig13205.2640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13205:1591..2279+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGATGAGAAACAAGAGGAATCCCACCCCAGCATCGAGGTTGTGCTCGT
TGCCCTTGGGCTTGTTCGTACGCGTGCTGTGCTGGTTTGCGGACCGCTTT
CGAACACACGCCCAATAACCAACGTGGCCAAGGCCCAAACGAGCGGAGAT
CGACCTACATTGCTGGGGACACATCCCGTTCGGTTCAGCCTGCCTTTCTC
TCTCTCCCTCTCTCTCGAGGGTCTACCGACGTCTGACCCAGGCGTCGACC
TTTTCTTCTGCTTCAGTCGGCGAGCGGGCTCTCGGCTGTCGCCCGCAGTG
ACGCTTGGTTTTTTTAGTTTTTGCCGGAGAGAGCCGTGGTCGGTACAGTA
GGGCGATGAGAAACAAGAGGAATCCCACCCCAGCATCGAGGTTGTGCTCG
TTGCCCTTGGGCTTGTTCGTACGCGTGCTGTGCTGGTTTGCGGACCGCTT
TCGAACACACGCCCAATAACCAACGTGGCCAAGGCCCAAACGAGCGGAGA
TCGACCTACATTGCTGGGGACACATCCCGTTCGGTTCAGCCTGCCTTTCT
CTCTCTCCCTCTCTCTCGAGGGTCTACCGACGTCTGACCCAGGCGTCGAC
CTTTTCTTCTGCTTCAGTCGGCGAGCGGGCTCTCGGCTGTCGCCCGCAGT
GACGCTTGGTTTTTTTAGTTTTTGCCGGAGAGAGCCGTGGTCGGTACAGT
AG
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