mRNA_H-canaliculatus_F_contig13200.2637.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13200.2637.1
Unique NamemRNA_H-canaliculatus_F_contig13200.2637.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13200.2637.1 vs. uniprot
Match: D7G0U6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.020e-20
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    7 ANINPRRECWFLLDTKWLQSWAKFVRGEGPPPGRISNEG 123
            ANINPRRECWF++DTKWLQ+WAKFVRGEGPPPGRISN+G
Sbjct:   93 ANINPRRECWFIVDTKWLQTWAKFVRGEGPPPGRISNKG 131
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BLAST of mRNA_H-canaliculatus_F_contig13200.2637.1 vs. uniprot
Match: A0A6U1BH02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BH02_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-10
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 RANINPRRECWFLLDTKWLQSWAKFVRGEGPPPGRISN 117
            +  INPRRECWFL+DT W++ W+ ++ G+   PGRISN
Sbjct:   57 KTEINPRRECWFLIDTTWIRDWSLYMEGKRDSPGRISN 94
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BLAST of mRNA_H-canaliculatus_F_contig13200.2637.1 vs. uniprot
Match: A0A662Y400_9STRA (DUSP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y400_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 7.020e-5
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 1 
Query:   25 RECWFLLDTKWLQSWAKFVRGEGPPPGRISNE 120
            +ECWF+++T W+  W  FV   GP PG ISN+
Sbjct:  421 KECWFVVNTAWMNRWVLFVGKGGPEPGPISND 452
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BLAST of mRNA_H-canaliculatus_F_contig13200.2637.1 vs. uniprot
Match: A0A662YFZ9_9STRA (DUSP domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFZ9_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 7.020e-5
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 1 
Query:   25 RECWFLLDTKWLQSWAKFVRGEGPPPGRISNE 120
            +ECWF+++T W+  W  FV   GP PG ISN+
Sbjct:  467 KECWFVVNTAWMNRWVLFVGKGGPEPGPISND 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13200.2637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0U6_ECTSI2.020e-2089.74DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U1BH02_9STRA3.870e-1055.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662Y400_9STRA7.020e-550.00DUSP domain-containing protein n=1 Tax=Nothophytop... [more]
A0A662YFZ9_9STRA7.020e-550.00DUSP domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13200contigH-canaliculatus_F_contig13200:202..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog2880.D7G0U6
EggNOG free text desc.Domain in ubiquitin-specific proteases.
EggNOG OGs2BXEB@1,2S2F5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.6123092-CDS-H-canaliculatus_F_contig13200:201..3331622929059.6123092-CDS-H-canaliculatus_F_contig13200:201..333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13200 202..333 -
1696845664.0864952-CDS-H-canaliculatus_F_contig13200:201..3331696845664.0864952-CDS-H-canaliculatus_F_contig13200:201..333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13200 202..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13200.2637.1prot_H-canaliculatus_F_contig13200.2637.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13200 202..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13200.2637.1

>prot_H-canaliculatus_F_contig13200.2637.1 ID=prot_H-canaliculatus_F_contig13200.2637.1|Name=mRNA_H-canaliculatus_F_contig13200.2637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=44bp
HRANINPRRECWFLLDTKWLQSWAKFVRGEGPPPGRISNEGTP*
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mRNA from alignment at H-canaliculatus_F_contig13200:202..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13200.2637.1 ID=mRNA_H-canaliculatus_F_contig13200.2637.1|Name=mRNA_H-canaliculatus_F_contig13200.2637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13200:202..333- (Hapterophycus canaliculatus Oshoro5f female)
CACAGGGCTAACATCAATCCGCGTCGCGAGTGCTGGTTCCTCTTGGACAC
CAAGTGGCTGCAGAGCTGGGCCAAGTTCGTCCGTGGCGAGGGTCCCCCGC
CCGGGCGAATCAGCAACGAAGGTACGCCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13200:202..333-

>mRNA_H-canaliculatus_F_contig13200.2637.1 ID=mRNA_H-canaliculatus_F_contig13200.2637.1|Name=mRNA_H-canaliculatus_F_contig13200.2637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13200:202..333- (Hapterophycus canaliculatus Oshoro5f female)
CACAGGGCTAACATCAATCCGCGTCGCGAGTGCTGGTTCCTCTTGGACAC
CAAGTGGCTGCAGAGCTGGGCCAAGTTCGTCCGTGGCGAGGGTCCCCCGC
CCGGGCGAATCAGCAACGAAGGTACGCCTTGACACAGGGCTAACATCAAT
CCGCGTCGCGAGTGCTGGTTCCTCTTGGACACCAAGTGGCTGCAGAGCTG
GGCCAAGTTCGTCCGTGGCGAGGGTCCCCCGCCCGGGCGAATCAGCAACG
AAGGTACGCCTTGA
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