mRNA_H-canaliculatus_F_contig132.2633.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2633.1
Unique NamemRNA_H-canaliculatus_F_contig132.2633.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig132.2633.1 vs. uniprot
Match: D7G2I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 9.990e-14
Identity = 131/311 (42.12%), Postives = 151/311 (48.55%), Query Frame = 1 
Query:    1 MESLPSKMREADQHLDRLGGILRSLRAPPSEQVPTPTTLRRLKQGKPQKEHQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQDERWFVRVSRSSSLSSQSRSRRAPQYSQSETTTS---PTIHCDRYRNHRQQHHCCVAAASPGGCLINKPEIDFVPAEEQSDRLAHRRPVERAAVHDEA--PTPKDQRAGDVDSDDPPRAAA--------ADAESVPPAHCTGVDTDASIAAAAV--------AGATSSIQEKVSXXXXXLSLRRRVIRTWWRGLSSGVCFAAGAWAREGHGLFGAALALTAM 870
            MESLPSKM+EADQHLDRLG ILRSLRA PS++V   +  +  +Q +  +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       P +H           H C   A+  G L +KPE D   A +Q   L   R  E   V      PTP+         D  PR           AD+  VP A    V     +A A          AG  +++ E         SLR R IRTWWRGLS G+CFAAGAWAREGHG FGA LAL A+
Sbjct:    1 MESLPSKMQEADQHLDRLGSILRSLRARPSDRVFFSSAAQLTEQARRNENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALHS----------HRCSGTATTDGRLADKPESD---ARKQDAPLRRPRQAEVGDVGRSVAPPTPQFHERVSGADDKGPRLGXXXXXXXXXADSGFVPSAPSIKVVVRPGVAGAEAGSCGDGGGAGTAAAVAETTKSVRGP-SLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAV 297
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BLAST of mRNA_H-canaliculatus_F_contig132.2633.1 vs. uniprot
Match: A0A6H5L086_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L086_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.070e-11
Identity = 65/171 (38.01%), Postives = 78/171 (45.61%), Query Frame = 1 
Query:  415 HCCVAAASPGGCLINKPEIDFVPAEEQSDRLAHRRPVERAAVHDEA--PTPK-DQRAGDVDSDDPPRAA--------AADAESVPPAHCTGVDTDASIAAAAVA--------GATSSIQEKVSXXXXXLSLRRRVIRTWWRGLSSGVCFAAGAWAREGHGLFGAALALTAM 870
            H C    S    L +KPE D   A +Q   L   R  +  AV      PTP+  +R G  D D  PR            D + VP A  + V     +  A           G  +S   + +      SLR R IRTWWRGLS G+CFAAGAWAREGHG FGA LAL A+
Sbjct:  137 HRCSGTTSTADRLADKPESD---ARKQDAPLRRPRQADMGAVRRSVAPPTPQFHERVGGAD-DKGPRLGNXXXXXXXXPDGDFVPWAPSSTVVVRPGVVGAEAGSCGDGGGTGTAASAVAETTKRVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAV 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I5_ECTSI9.990e-1442.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L086_9PHAE2.070e-1138.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:51296..52933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001650.1
Exons2
Model size900
Cds size900
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.6648178-CDS-H-canaliculatus_F_contig132:51295..513281622929058.6648178-CDS-H-canaliculatus_F_contig132:51295..51328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 51296..51328 +
1696845663.772959-CDS-H-canaliculatus_F_contig132:51295..513281696845663.772959-CDS-H-canaliculatus_F_contig132:51295..51328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 51296..51328 +
1622929058.6797707-CDS-H-canaliculatus_F_contig132:52066..529331622929058.6797707-CDS-H-canaliculatus_F_contig132:52066..52933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 52067..52933 +
1696845663.7842484-CDS-H-canaliculatus_F_contig132:52066..529331696845663.7842484-CDS-H-canaliculatus_F_contig132:52066..52933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 52067..52933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2633.1prot_H-canaliculatus_F_contig132.2633.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 51296..52933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2633.1

>prot_H-canaliculatus_F_contig132.2633.1 ID=prot_H-canaliculatus_F_contig132.2633.1|Name=mRNA_H-canaliculatus_F_contig132.2633.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=300bp
MESLPSKMREADQHLDRLGGILRSLRAPPSEQVPTPTTLRRLKQGKPQKE
HQDPHQDRRKQFQQKQQQQQRRQEQEEHERQGQEQGCEQDERWFVRVSRS
SSLSSQSRSRRAPQYSQSETTTSPTIHCDRYRNHRQQHHCCVAAASPGGC
LINKPEIDFVPAEEQSDRLAHRRPVERAAVHDEAPTPKDQRAGDVDSDDP
PRAAAADAESVPPAHCTGVDTDASIAAAAVAGATSSIQEKVSSSSSSLSL
RRRVIRTWWRGLSSGVCFAAGAWAREGHGLFGAALALTAMVLVEFIDTS*
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mRNA from alignment at H-canaliculatus_F_contig132:51296..52933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2633.1 ID=mRNA_H-canaliculatus_F_contig132.2633.1|Name=mRNA_H-canaliculatus_F_contig132.2633.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:51296..52933+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTCTCTGCCAAGCAAGATGCGTGAAGCCGTGAGTGTTGCTGTCGG
CGTTGTGCGACGGTTGACTCTGTTCCCTCCGGAACAGGAGCGGTAAAGAA
CAACGAGTCTCCACAAGTGTACCACGTTGAGATACAGAGAAATTGAAAGA
AGAGCTCAGCGCTACCGCGAACAGCATTAACGCGGGCGTCATGGTAGCTT
TCACGTGGTAATGACGTACATGCCGTGAACCAGCCATTGGACGGGACATC
GGCAGGAGAGAACAAATTTTGCAACAACAGTGAATCAAATGCTCCCTTCC
TTGGTCCTGCACTGCACACAGCTGCCAACTGCCGTGTTGTTCAGTAACAC
AGCAGCCACGTTTGTGTCATCCTTATCTTGAATAGATACCGCGATACATG
TGTTGGCTGCTTTGAGCCGGAGACAAGAGGCCACAAGTTCTATGCGTTTG
GAACGTCCGCTTGAATGGACGAAGGTGGTCACTCCTTGTTCTACAGCACT
ACCACCACCTGCTGTATCTCGAGCAGTAGATGAATCTCAGCATGAGAGCA
CCCGCGCAAGGAGCCCTCTCGCACGGCAGTATGGTCCTGGAGCGATGTTC
GTGCCTGTAGATACCATGTGTACGGTGATACCGTGTGCGCGGTGGAGGTA
AACTCGATTTGAAAGCTACTCGTTGGCGAATGTTTTGCAGGATGTGGCCT
CTCTCACCCTTGACTGAGGTTCGCTCTTCACGTTCAAAACTCTCGTGTAT
TTTATGTTGCCTGTGTCCCAGGATCAGCATTTGGATCGTTTAGGTGGCAT
TCTTCGCAGCCTAAGAGCTCCCCCGTCCGAACAAGTTCCAACCCCGACCA
CGCTCCGGCGCCTCAAACAAGGCAAACCGCAAAAGGAGCACCAAGACCCA
CATCAAGACCGGCGAAAGCAATTTCAGCAGAAGCAGCAGCAGCAGCAGCG
GCGGCAGGAGCAAGAAGAACATGAAAGACAGGGACAAGAACAAGGTTGCG
AGCAAGATGAGAGGTGGTTCGTCCGCGTCTCCCGATCTTCGTCGCTGTCG
TCCCAATCGCGTTCACGCAGGGCACCTCAATATTCACAGTCTGAAACGAC
AACCTCCCCCACAATCCATTGCGATCGCTACCGCAACCACCGCCAGCAAC
ATCATTGCTGCGTGGCGGCGGCGTCGCCGGGGGGTTGTCTCATCAACAAG
CCGGAAATCGATTTCGTACCAGCGGAAGAGCAAAGCGACCGTTTGGCACA
TCGACGACCGGTGGAGAGGGCAGCCGTGCACGATGAGGCTCCCACTCCAA
AGGATCAGCGTGCGGGTGATGTGGACAGTGACGACCCGCCCCGCGCCGCT
GCCGCTGATGCTGAATCTGTCCCTCCAGCGCATTGCACTGGTGTTGACAC
CGATGCCTCCATTGCTGCTGCTGCTGTTGCCGGGGCGACATCAAGCATTC
AAGAGAAGGTGTCATCGTCGTCCTCGTCGTTATCGTTGAGAAGGCGGGTT
ATCCGCACGTGGTGGAGAGGCCTATCGTCCGGCGTCTGTTTCGCGGCAGG
CGCTTGGGCGCGTGAGGGGCATGGATTGTTCGGCGCGGCGCTGGCTTTGA
CCGCGATGGTTCTGGTAGAGTTCATTGACACATCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:51296..52933+

>mRNA_H-canaliculatus_F_contig132.2633.1 ID=mRNA_H-canaliculatus_F_contig132.2633.1|Name=mRNA_H-canaliculatus_F_contig132.2633.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1800bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:51296..52933+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTCTCTGCCAAGCAAGATGCGTGAAGCCATGGAGTCTCTGCCAAG
CAAGATGCGTGAAGCCGATCAGCATTTGGATCGTTTAGGTGGCATTCTTC
GCAGCCTAAGAGCTCCCCCGTCCGAACAAGTTCCAACCCCGACCACGCTC
CGGCGCCTCAAACAAGGCAAACCGCAAAAGGAGCACCAAGACCCACATCA
AGACCGGCGAAAGCAATTTCAGCAGAAGCAGCAGCAGCAGCAGCGGCGGC
AGGAGCAAGAAGAACATGAAAGACAGGGACAAGAACAAGGTTGCGAGCAA
GATGAGAGGTGGTTCGTCCGCGTCTCCCGATCTTCGTCGCTGTCGTCCCA
ATCGCGTTCACGCAGGGCACCTCAATATTCACAGTCTGAAACGACAACCT
CCCCCACAATCCATTGCGATCGCTACCGCAACCACCGCCAGCAACATCAT
TGCTGCGTGGCGGCGGCGTCGCCGGGGGGTTGTCTCATCAACAAGCCGGA
AATCGATTTCGTACCAGCGGAAGAGCAAAGCGACCGTTTGGCACATCGAC
GACCGGTGGAGAGGGCAGCCGTGCACGATGAGGCTCCCACTCCAAAGGAT
CAGCGTGCGGGTGATGTGGACAGTGACGACCCGCCCCGCGCCGCTGCCGC
TGATGCTGAATCTGTCCCTCCAGCGCATTGCACTGGTGTTGACACCGATG
CCTCCATTGCTGCTGCTGCTGTTGCCGGGGCGACATCAAGCATTCAAGAG
AAGGTGTCATCGTCGTCCTCGTCGTTATCGTTGAGAAGGCGGGTTATCCG
CACGTGGTGGAGAGGCCTATCGTCCGGCGTCTGTTTCGCGGCAGGCGCTT
GGGCGCGTGAGGGGCATGGATTGTTCGGCGCGGCGCTGGCTTTGACCGCG
ATGGTTCTGGTAGAGTTCATTGACACATCATGAGATCAGCATTTGGATCG
TTTAGGTGGCATTCTTCGCAGCCTAAGAGCTCCCCCGTCCGAACAAGTTC
CAACCCCGACCACGCTCCGGCGCCTCAAACAAGGCAAACCGCAAAAGGAG
CACCAAGACCCACATCAAGACCGGCGAAAGCAATTTCAGCAGAAGCAGCA
GCAGCAGCAGCGGCGGCAGGAGCAAGAAGAACATGAAAGACAGGGACAAG
AACAAGGTTGCGAGCAAGATGAGAGGTGGTTCGTCCGCGTCTCCCGATCT
TCGTCGCTGTCGTCCCAATCGCGTTCACGCAGGGCACCTCAATATTCACA
GTCTGAAACGACAACCTCCCCCACAATCCATTGCGATCGCTACCGCAACC
ACCGCCAGCAACATCATTGCTGCGTGGCGGCGGCGTCGCCGGGGGGTTGT
CTCATCAACAAGCCGGAAATCGATTTCGTACCAGCGGAAGAGCAAAGCGA
CCGTTTGGCACATCGACGACCGGTGGAGAGGGCAGCCGTGCACGATGAGG
CTCCCACTCCAAAGGATCAGCGTGCGGGTGATGTGGACAGTGACGACCCG
CCCCGCGCCGCTGCCGCTGATGCTGAATCTGTCCCTCCAGCGCATTGCAC
TGGTGTTGACACCGATGCCTCCATTGCTGCTGCTGCTGTTGCCGGGGCGA
CATCAAGCATTCAAGAGAAGGTGTCATCGTCGTCCTCGTCGTTATCGTTG
AGAAGGCGGGTTATCCGCACGTGGTGGAGAGGCCTATCGTCCGGCGTCTG
TTTCGCGGCAGGCGCTTGGGCGCGTGAGGGGCATGGATTGTTCGGCGCGG
CGCTGGCTTTGACCGCGATGGTTCTGGTAGAGTTCATTGACACATCATGA
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