mRNA_H-canaliculatus_F_contig132.2631.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2631.1
Unique NamemRNA_H-canaliculatus_F_contig132.2631.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:38122..39703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-12_001670.1
Exons3
Model size266
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2631.1prot_H-canaliculatus_F_contig132.2631.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 39141..39703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.3951166-UTR-H-canaliculatus_F_contig132:38121..381861622929058.3951166-UTR-H-canaliculatus_F_contig132:38121..38186Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 38122..38186 +
1696845663.569181-UTR-H-canaliculatus_F_contig132:38121..381861696845663.569181-UTR-H-canaliculatus_F_contig132:38121..38186Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 38122..38186 +
1622929058.4083514-UTR-H-canaliculatus_F_contig132:39110..391401622929058.4083514-UTR-H-canaliculatus_F_contig132:39110..39140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 39111..39140 +
1696845663.5793118-UTR-H-canaliculatus_F_contig132:39110..391401696845663.5793118-UTR-H-canaliculatus_F_contig132:39110..39140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 39111..39140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.4205332-CDS-H-canaliculatus_F_contig132:39140..391811622929058.4205332-CDS-H-canaliculatus_F_contig132:39140..39181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 39141..39181 +
1696845663.597149-CDS-H-canaliculatus_F_contig132:39140..391811696845663.597149-CDS-H-canaliculatus_F_contig132:39140..39181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 39141..39181 +
1622929058.4318793-CDS-H-canaliculatus_F_contig132:39573..397031622929058.4318793-CDS-H-canaliculatus_F_contig132:39573..39703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 39574..39703 +
1696845663.6085942-CDS-H-canaliculatus_F_contig132:39573..397031696845663.6085942-CDS-H-canaliculatus_F_contig132:39573..39703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 39574..39703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2631.1

>prot_H-canaliculatus_F_contig132.2631.1 ID=prot_H-canaliculatus_F_contig132.2631.1|Name=mRNA_H-canaliculatus_F_contig132.2631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
MWHQTVDLHGRPYWVNTVTGQATYQLQQGGGFATHYPNPASPPMAMGMGP
SAMGMAY
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mRNA from alignment at H-canaliculatus_F_contig132:38122..39703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2631.1 ID=mRNA_H-canaliculatus_F_contig132.2631.1|Name=mRNA_H-canaliculatus_F_contig132.2631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:38122..39703+ (Hapterophycus canaliculatus Oshoro5f female)
TCACCACCGCCATCTTCCTCTGCGGTAGCCCTGAACACCTACTACCTGAA
CACGTCACGTAGCTGGTAAGACCACACGATTCCACGATTGCTCCGAGCTT
GAACCCCTGCCTACGTCCGTCACCGACCGCGAGCGTGCTTGCTTCCTCAT
TCGGGGTTCGATTGCTGTCTATCGTGCTTGTTTGAGAAACACCTGGAGAT
ATCTGAGCGTGAAACCGCGCACAGACTGAGGAATAGAATAGCAAGCGGAT
GGTAAGGTGGCGAGACAAGGTAGGGCCGCTGTCTTACTTCAGCTGAATAG
AACGCAGGAAACTCGCTCGCATGTTCATCAGCATCTATCTCCGATTCTTG
GTGCTGCCTCTTACTGTAGGTGTGTTCTCTTCGATATCCCTACGTATACA
TCCACGGTATCTTGACCACATACATCCGTTTCAGACACACTAAACGGCCT
CTTTAGTTTCTATCTGCGACGGAATCGGTCGCATCACGATTGTGGTACAG
TTTGTCTTCGTCCCCGAACCGTTGTTCATACCTACCTCTTTCTCGATTCA
CCAAACGTAAGTGCAACCCCTGCTTTGCTCGCACTCACATCGCCGGCGTT
CACACTGCTGTTGAGGAAACAATAAATCACAACACAACACCACTGTTCTA
CATTTTCAAAGCCATGTATATCGTACAATGTCAGCAAATAATCGCTCGTT
CGGTGCTGCTATCCGCATGGTGACTTTTGCGTGTTGTGTCCGCCCTGCTC
TTCTTTGAGAACGCCTGTGAAAGCTCCGGCTTCCCCGTAGAAATGCTTCT
TGTGTTCGGACGCGTAAACGTAGACTTTGTAGAACGGTTGGTGATCTGAC
TCGTGTAGAAATATCTCGGCCATCAGTCGTGCCACGCAGAATTAGCATGA
GAAGCGACCCTCCCTTGGTTGTCAACACCTTGTTGTGTTTTTCGGCCGAT
GCGACCGCCCAACGCTCCTTCCGCCTCTGGGTTACGCAGGACATACACTG
GAAGAACCAAAACCGAATAATGTGGCACCAGACCGTAGACCTGCACGGCC
GCCCGTACTGGTGAGTATGGATGAACACTTGGTGTTTAGGTACTGTATTT
CGGTTTTAGGCGAAGCGCCGTAGTTTTGATGTGGGAAGGGTCGGTTGTGT
GCGCGAGTCGGTTGAAAAAACGCAAGTGAAGACGGCCCAAATTGATATCG
TAGAGCGCACATGCATCTCAAAATCGATTCGTGTCTGTATCTGATCCAGC
TCCTGGCCGGGCAGCAATGTAAACGGCTACAACTTCAACTTGGTCGCTCA
AAAGCTTTTTCAAGGCTAACAAAAATTCATCAGTCCGAGCAGTTCCAGCT
TCAAGTTTTTCTATTGAAGCTCAATGAAGCCGAACCAAACGTGTCCGCCT
GAACACCTATACCATTCCTTTCTTGGCATGCCGTCGGTCCTCTTTTGCGC
AGGGTAAACACTGTCACCGGTCAGGCTACCTACCAGCTCCAACAAGGCGG
CGGCTTCGCTACCCACTACCCGAACCCGGCATCACCTCCCATGGCAATGG
GAATGGGACCTTCGGCTATGGGGATGGCCTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:38122..39703+

>mRNA_H-canaliculatus_F_contig132.2631.1 ID=mRNA_H-canaliculatus_F_contig132.2631.1|Name=mRNA_H-canaliculatus_F_contig132.2631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:38122..39703+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGCACCAGACCGTAGACCTGCACGGCCGCCCGTACTGATGTGGCAC
CAGACCGTAGACCTGCACGGCCGCCCGTACTGGGTAAACACTGTCACCGG
TCAGGCTACCTACCAGCTCCAACAAGGCGGCGGCTTCGCTACCCACTACC
CGAACCCGGCATCACCTCCCATGGCAATGGGAATGGGACCTTCGGCTATG
GGGATGGCCTACGGTAAACACTGTCACCGGTCAGGCTACCTACCAGCTCC
AACAAGGCGGCGGCTTCGCTACCCACTACCCGAACCCGGCATCACCTCCC
ATGGCAATGGGAATGGGACCTTCGGCTATGGGGATGGCCTAC
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