mRNA_H-canaliculatus_F_contig132.2628.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2628.1
Unique NamemRNA_H-canaliculatus_F_contig132.2628.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig132.2628.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.360e-9
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MGSSSSTLLPAPDDRLLKSIRILDLSNTDLAKASPTRISAQQCNRGVIKRA 153
            MGSS STLLPAPDDRLLKSI+ILDLSNTDLAK            RG +  A
Sbjct:    1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLA 51
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BLAST of mRNA_H-canaliculatus_F_contig132.2628.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.800e-9
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MGSSSSTLLPAPDDRLLKSIRILDLSNTDLAKASPTRISAQQCNRGVIKRA 153
            MGSS STLLPAPDDRLLKSI+ILDLSNTDLAK            RG +  A
Sbjct:    1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLA 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2J3_ECTSI6.360e-964.71EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L1H5_9PHAE6.800e-964.71EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:28272..28556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3e-07
Seed eggNOG ortholog2880.D7G2J3
EggNOG OGs2DCZ5@1,2SCZN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size286
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.0910668-CDS-H-canaliculatus_F_contig132:28271..285561622929058.0910668-CDS-H-canaliculatus_F_contig132:28271..28556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 28272..28556 +
1696845663.4536211-CDS-H-canaliculatus_F_contig132:28271..285561696845663.4536211-CDS-H-canaliculatus_F_contig132:28271..28556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 28272..28556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2628.1prot_H-canaliculatus_F_contig132.2628.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 28272..28556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2628.1

>prot_H-canaliculatus_F_contig132.2628.1 ID=prot_H-canaliculatus_F_contig132.2628.1|Name=mRNA_H-canaliculatus_F_contig132.2628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MGSSSSTLLPAPDDRLLKSIRILDLSNTDLAKASPTRISAQQCNRGVIKR
AGACCTPFLKYSHVSIFWQNDIHVAVKPVLTCVLFLVQYTGCNIP
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mRNA from alignment at H-canaliculatus_F_contig132:28272..28556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2628.1 ID=mRNA_H-canaliculatus_F_contig132.2628.1|Name=mRNA_H-canaliculatus_F_contig132.2628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=285bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:28272..28556+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGATCAAGCAGCTCCACTCTATTGCCAGCTCCAGACGACCGATTACT
GAAAAGTATACGGATTTTGGATCTGAGCAACACCGACCTTGCGAAGGCAA
GTCCGACACGTATTAGTGCACAACAGTGCAACCGAGGTGTGATCAAGAGG
GCGGGAGCCTGTTGCACCCCTTTCTTAAAATATTCGCATGTATCGATCTT
CTGGCAAAACGATATACATGTGGCAGTCAAACCCGTTCTTACATGTGTGT
TGTTTCTCGTGCAATATACCGGCTGCAATATACCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:28272..28556+

>mRNA_H-canaliculatus_F_contig132.2628.1 ID=mRNA_H-canaliculatus_F_contig132.2628.1|Name=mRNA_H-canaliculatus_F_contig132.2628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:28272..28556+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGATCAAGCAGCTCCACTCTATTGCCAGCTCCAGACGACCGATTACT
GAAAAGTATACGGATTTTGGATCTGAGCAACACCGACCTTGCGAAGGCAA
GTCCGACACGTATTAGTGCACAACAGTGCAACCGAGGTGTGATCAAGAGG
GCGGGAGCCTGTTGCACCCCTTTCTTAAAATATTCGCATGTATCGATCTT
CTGGCAAAACGATATACATGTGGCAGTCAAACCCGTTCTTACATGTGTGT
TGTTTCTCGTGCAATATACCGGCTGCAATATACCGATGGGATCAAGCAGC
TCCACTCTATTGCCAGCTCCAGACGACCGATTACTGAAAAGTATACGGAT
TTTGGATCTGAGCAACACCGACCTTGCGAAGGCAAGTCCGACACGTATTA
GTGCACAACAGTGCAACCGAGGTGTGATCAAGAGGGCGGGAGCCTGTTGC
ACCCCTTTCTTAAAATATTCGCATGTATCGATCTTCTGGCAAAACGATAT
ACATGTGGCAGTCAAACCCGTTCTTACATGTGTGTTGTTTCTCGTGCAAT
ATACCGGCTGCAATATACCG
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