mRNA_H-canaliculatus_F_contig13191.2621.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13191.2621.1
Unique NamemRNA_H-canaliculatus_F_contig13191.2621.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A6H5KS91_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS91_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.580e-20
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MDDRNPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSLPSLSPPPQSLSS 180
            MD++NPL+MKV +LK ELG+RGLSQTGLKFDLAQRLQTAMDVDEFG+LPSL   PQ  SS
Sbjct:    1 MDEKNPLKMKVADLKAELGRRGLSQTGLKFDLAQRLQTAMDVDEFGTLPSLLSTPQPWSS 60
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: D8LQH6_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.580e-20
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MDDRNPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSLPSLSPPPQSLSS 180
            MD++NPL+MKV +LK ELG+RGLSQTGLKFDLAQRLQTAMDVDEFG+LPSL   PQ  SS
Sbjct:    1 MDEKNPLKMKVADLKAELGRRGLSQTGLKFDLAQRLQTAMDVDEFGTLPSLLSTPQPWSS 60
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A024UH29_9STRA (SAP domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH29_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.560e-9
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSL 144
            NP +MKV E+K EL KRGLSQTGLK +L QRL+ A+D +EFG L
Sbjct:    5 NPKKMKVNEIKDELAKRGLSQTGLKPELIQRLELALDEEEFGGL 48
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 MDDRNPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSLP 147
            M + NP +MKV +LK EL KR L  TGLK DL QRLQ A+D +EFG  P
Sbjct:    1 MSEVNPQKMKVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFGLAP 49
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A6G0XW40_9STRA (SAP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW40_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.990e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSL 144
            NP +MKV E+K EL KRGLSQ GLK +L QRL+ A+D +EFG +
Sbjct:    5 NPKKMKVNEIKDELAKRGLSQAGLKAELIQRLELALDEEEFGGM 48
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A425D5Z6_9STRA (SAP domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5Z6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.130e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSL 144
            NP +MKV E+K EL KRGLSQ GLK +L QRL+ A+D +EFG +
Sbjct:    5 NPKKMKVNEIKDELAKRGLSQAGLKPELIQRLELALDEEEFGGM 48
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A485LKI8_9STRA (Aste57867_22323 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKI8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.610e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSL 144
            NP +MKV E+K EL KRGLSQ GLK +L QRL+ A+D +EFG +
Sbjct:    5 NPKKMKVNEIKDELAKRGLSQAGLKPELIQRLELALDEEEFGDI 48
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A024GC21_9STRA (SAP domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GC21_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-7
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGS 141
            NP +MKV EL+ EL KRGLS  GLK +L QRL+ A+D +EFGS
Sbjct:  496 NPKKMKVGELRAELDKRGLSSNGLKTELIQRLELALDAEEFGS 538
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BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: F0WX17_9STRA (Uncharacterized protein AlNc14C339G10773 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX17_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.720e-7
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGS 141
            NP +MKV EL+ EL KRGLS  GLK +L QRL+ A+D +EFGS
Sbjct:    5 NPKKMKVGELRAELEKRGLSSNGLKTELIQRLELALDAEEFGS 47
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Match: A0A8K1C8N1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8N1_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 1.870e-7
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   13 NPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSLPSLSPPPQSLSS 180
            NP +MKV+EL+ EL  RGLS  GLK +L QRL+ A+D +EFGS      PP + SS
Sbjct:    7 NPKKMKVSELRAELESRGLSSNGLKSELIQRLEMALDEEEFGSAAEDLAPPAASSS 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13191.2621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS91_9PHAE2.580e-2078.33SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQH6_ECTSI2.580e-2078.33SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A024UH29_9STRA8.560e-965.91SAP domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A835Z395_9STRA2.900e-859.18SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6G0XW40_9STRA3.990e-861.36SAP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A425D5Z6_9STRA6.130e-861.36SAP domain-containing protein n=7 Tax=Aphanomyces ... [more]
A0A485LKI8_9STRA7.610e-861.36Aste57867_22323 protein n=1 Tax=Aphanomyces stella... [more]
A0A024GC21_9STRA1.440e-762.79SAP domain-containing protein n=1 Tax=Albugo candi... [more]
F0WX17_9STRA1.720e-762.79Uncharacterized protein AlNc14C339G10773 n=1 Tax=A... [more]
A0A8K1C8N1_PYTOL1.870e-753.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13191contigH-canaliculatus_F_contig13191:351..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-10_005670.1
Exons2
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.923062-CDS-H-canaliculatus_F_contig13191:350..5001622929056.923062-CDS-H-canaliculatus_F_contig13191:350..500Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13191 351..500 -
1696845663.1527865-CDS-H-canaliculatus_F_contig13191:350..5001696845663.1527865-CDS-H-canaliculatus_F_contig13191:350..500Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13191 351..500 -
1622929056.9422133-CDS-H-canaliculatus_F_contig13191:809..8391622929056.9422133-CDS-H-canaliculatus_F_contig13191:809..839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13191 810..839 -
1696845663.1613886-CDS-H-canaliculatus_F_contig13191:809..8391696845663.1613886-CDS-H-canaliculatus_F_contig13191:809..839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13191 810..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13191.2621.1prot_H-canaliculatus_F_contig13191.2621.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13191 351..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13191.2621.1

>prot_H-canaliculatus_F_contig13191.2621.1 ID=prot_H-canaliculatus_F_contig13191.2621.1|Name=mRNA_H-canaliculatus_F_contig13191.2621.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=60bp
MDDRNPLRMKVTELKMELGKRGLSQTGLKFDLAQRLQTAMDVDEFGSLPS
LSPPPQSLSS
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mRNA from alignment at H-canaliculatus_F_contig13191:351..839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13191.2621.1 ID=mRNA_H-canaliculatus_F_contig13191.2621.1|Name=mRNA_H-canaliculatus_F_contig13191.2621.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=489bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13191:351..839- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGACAGGAATCCTCTCAGAATGAAGGTGAGCGTGCTGTGTGCAAC
CTGCCCAATACCTTGGCATGAAGGATATCTTCTGCATGATTCTACCGGTC
GAATCTGCCTCGAAACCGAAGGCCGAGGAAACAACATCCATCCATGGCCG
TGTCTCACCCTTTTTCGTGCCCTCGAAGGCACGATCCACGTCGCACTAAC
AGATGCTGCCCTGAAGTGACTGTACCTGGTGATTTGCTTCAATACATTTC
GGCGGATACTTGCCACAGCGTCTTCACCATTGTTGCTTTGATGCAAAAAG
CTCTGGTGCGCGGATCGTCTACTTGTACGTCACGTGTAGGTGACGGAGCT
GAAAATGGAGCTGGGAAAGCGAGGTCTCAGCCAGACCGGGCTCAAGTTTG
ACCTCGCTCAGCGCCTCCAGACTGCTATGGATGTTGACGAGTTCGGCTCC
TTACCTTCGCTCTCGCCTCCACCGCAATCGTTGTCGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13191:351..839-

>mRNA_H-canaliculatus_F_contig13191.2621.1 ID=mRNA_H-canaliculatus_F_contig13191.2621.1|Name=mRNA_H-canaliculatus_F_contig13191.2621.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13191:351..839- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGACAGGAATCCTCTCAGAATGAAGATGGACGACAGGAATCCTCT
CAGAATGAAGGTGACGGAGCTGAAAATGGAGCTGGGAAAGCGAGGTCTCA
GCCAGACCGGGCTCAAGTTTGACCTCGCTCAGCGCCTCCAGACTGCTATG
GATGTTGACGAGTTCGGCTCCTTACCTTCGCTCTCGCCTCCACCGCAATC
GTTGTCGTCGGTGACGGAGCTGAAAATGGAGCTGGGAAAGCGAGGTCTCA
GCCAGACCGGGCTCAAGTTTGACCTCGCTCAGCGCCTCCAGACTGCTATG
GATGTTGACGAGTTCGGCTCCTTACCTTCGCTCTCGCCTCCACCGCAATC
GTTGTCGTCG
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