mRNA_H-canaliculatus_F_contig13184.2617.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13184.2617.1
Unique NamemRNA_H-canaliculatus_F_contig13184.2617.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13184.2617.1 vs. uniprot
Match: D8LIB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 8.090e-21
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 FNCAGRHGLRSGRALADDTACNWCGTLFPKGSRMFSCRECDCDACLEC 144
            FNCAG+HGL+S  A ADDT CNWCG+ +P GSRMFSCRECDCDACLEC
Sbjct:  177 FNCAGQHGLQSCAAPADDTTCNWCGSKWPAGSRMFSCRECDCDACLEC 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13184.2617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIB4_ECTSI8.090e-2179.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13184contigH-canaliculatus_F_contig13184:2918..3061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-24_001510.1
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.9720757-CDS-H-canaliculatus_F_contig13184:2917..30611622929055.9720757-CDS-H-canaliculatus_F_contig13184:2917..3061Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13184 2918..3061 -
1696845662.7323592-CDS-H-canaliculatus_F_contig13184:2917..30611696845662.7323592-CDS-H-canaliculatus_F_contig13184:2917..3061Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13184 2918..3061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13184.2617.1prot_H-canaliculatus_F_contig13184.2617.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13184 2918..3061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13184.2617.1

>prot_H-canaliculatus_F_contig13184.2617.1 ID=prot_H-canaliculatus_F_contig13184.2617.1|Name=mRNA_H-canaliculatus_F_contig13184.2617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
FNCAGRHGLRSGRALADDTACNWCGTLFPKGSRMFSCRECDCDACLEC
back to top

mRNA from alignment at H-canaliculatus_F_contig13184:2918..3061-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13184.2617.1 ID=mRNA_H-canaliculatus_F_contig13184.2617.1|Name=mRNA_H-canaliculatus_F_contig13184.2617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13184:2918..3061- (Hapterophycus canaliculatus Oshoro5f female)
TTCAACTGCGCGGGCCGCCACGGCCTGCGATCCGGCAGGGCCCTCGCCGA
CGACACCGCCTGCAACTGGTGCGGCACGCTCTTCCCGAAGGGCAGCCGGA
TGTTCTCCTGCAGGGAGTGCGACTGCGACGCGTGTCTGGAGTGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13184:2918..3061-

>mRNA_H-canaliculatus_F_contig13184.2617.1 ID=mRNA_H-canaliculatus_F_contig13184.2617.1|Name=mRNA_H-canaliculatus_F_contig13184.2617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13184:2918..3061- (Hapterophycus canaliculatus Oshoro5f female)
TTCAACTGCGCGGGCCGCCACGGCCTGCGATCCGGCAGGGCCCTCGCCGA
CGACACCGCCTGCAACTGGTGCGGCACGCTCTTCCCGAAGGGCAGCCGGA
TGTTCTCCTGCAGGGAGTGCGACTGCGACGCGTGTCTGGAGTGCTTCAAC
TGCGCGGGCCGCCACGGCCTGCGATCCGGCAGGGCCCTCGCCGACGACAC
CGCCTGCAACTGGTGCGGCACGCTCTTCCCGAAGGGCAGCCGGATGTTCT
CCTGCAGGGAGTGCGACTGCGACGCGTGTCTGGAGTGC
back to top