mRNA_H-canaliculatus_F_contig13179.2612.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13179.2612.1
Unique NamemRNA_H-canaliculatus_F_contig13179.2612.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: D7FZ84_ECTSI (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ84_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.880e-37
Identity = 63/71 (88.73%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 QGFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            +GFVDVLSS+NSEHAAIAN  KKMYGLQFHPEVTHSPLGKVIL+AFVVDICGAPTDWNM+DIA+EFI+EVR
Sbjct:   61 EGFVDVLSSDNSEHAAIANMAKKMYGLQFHPEVTHSPLGKVILEAFVVDICGAPTDWNMADIADEFIKEVR 131
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A835ZID4_9STRA (GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellular organisms TaxID=131567 RepID=A0A835ZID4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.220e-30
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVD+L + NS+HA IAN EKKMYGLQFHPEVTHSPLGK +L+ FVV+ICGAPT+WNM DIA+EF+REVR
Sbjct:  161 GFVDILRTSNSQHAGIANPEKKMYGLQFHPEVTHSPLGKDLLRNFVVNICGAPTNWNMLDIADEFVREVR 230
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A418B2P0_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B2P0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.490e-28
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVD+  + NSEHAAIAN  KK +G+QFHPEVTHSPLGKV+L+ FVVDICG+PTDWNM  IA+ FI EVR
Sbjct:   63 GFVDIAFTANSEHAAIANASKKHFGIQFHPEVTHSPLGKVLLKNFVVDICGSPTDWNMRSIADAFIEEVR 132
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A485LAZ1_9STRA (GMP synthase (glutamine-hydrolyzing) n=14 Tax=Aphanomyces TaxID=100860 RepID=A0A485LAZ1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.780e-28
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVD+  + NSEHAAIAN  KK +G+QFHPEVTHSPLGKV+L+ FVVDICG+PTDWNM +IA+ FI EVR
Sbjct:  156 GFVDIAFTANSEHAAIANASKKYFGIQFHPEVTHSPLGKVLLKNFVVDICGSPTDWNMRNIADAFIEEVR 225
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A5D6YZA6_9STRA (GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6YZA6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.230e-27
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GF DV ++ENS+HAAI N EK+ +G+QFHPEVTHSPLGK IL+ FVVDICG+PTDW+M +IA+ FI EVR
Sbjct:  153 GFADVATTENSQHAAIVNVEKQFFGIQFHPEVTHSPLGKTILKNFVVDICGSPTDWDMKNIADAFIEEVR 222
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A2D4CHB3_PYTIN (GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CHB3_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 9.240e-27
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 QGFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            +GFVD+  +ENS+H AI N EK+ YG+QFHPEVTHSPLGK IL+ FVV+ICGAPTDW+M  IA+ FI EVR
Sbjct:  153 EGFVDIAYTENSQHTAIVNLEKRFYGIQFHPEVTHSPLGKDILKNFVVNICGAPTDWDMRSIADAFIEEVR 223
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A2D4C2U0_PYTIN (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2U0_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 1.360e-26
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 QGFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            +GFVD+  +ENS+H AI N EK+ YG+QFHPEVTHSPLGK IL+ FVV+ICGAPTDW+M  IA+ FI EVR
Sbjct:  742 EGFVDIAYTENSQHTAIVNLEKRFYGIQFHPEVTHSPLGKDILKNFVVNICGAPTDWDMRSIADAFIEEVR 812
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: T0S6B3_SAPDV (GMP synthase (glutamine-hydrolyzing) n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0S6B3_SAPDV)

HSP 1 Score: 109 bits (273), Expect = 1.790e-26
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVDV  + NSEHAAIAN EKK +G+QFHPEVTHSPLGK +L  FVVDIC +PTDW+M +IAE FI+EVR
Sbjct:  158 GFVDVAYTANSEHAAIANIEKKYFGIQFHPEVTHSPLGKKLLSNFVVDICKSPTDWDMRNIAEVFIQEVR 227
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BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: H3GA45_PHYRM (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA45_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 1.210e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVD+ ++ENSEHAAI N E+K YG+QFHPEVTHSP GK IL+ FVV IC +PTDW+M  IA+ FI EVR
Sbjct:  155 GFVDIATTENSEHAAIVNVERKFYGIQFHPEVTHSPRGKDILRNFVVTICNSPTDWDMRSIADAFIEEVR 224
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Match: A0A421GYK1_9STRA (GMP synthase (glutamine-hydrolyzing) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GYK1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.120e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 GFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDICGAPTDWNMSDIAEEFIREVR 213
            GFVD+  +ENSEHAAI N E+K YG+QFHPEVTHSP GK IL+ FVV+IC +PTDW+M  IA+ FI EVR
Sbjct:  155 GFVDIAITENSEHAAIVNVERKFYGIQFHPEVTHSPRGKDILRNFVVNICKSPTDWDMRSIADSFIAEVR 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13179.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ84_ECTSI9.880e-3788.73GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectoc... [more]
A0A835ZID4_9STRA2.220e-3077.14GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellu... [more]
A0A418B2P0_9STRA3.490e-2872.86GMP synthase (glutamine-hydrolyzing) n=1 Tax=Aphan... [more]
A0A485LAZ1_9STRA3.780e-2872.86GMP synthase (glutamine-hydrolyzing) n=14 Tax=Apha... [more]
A0A5D6YZA6_9STRA2.230e-2770.00GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythi... [more]
A0A2D4CHB3_PYTIN9.240e-2769.01GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythi... [more]
A0A2D4C2U0_PYTIN1.360e-2669.01GMP synthase (glutamine-hydrolyzing) n=1 Tax=Pythi... [more]
T0S6B3_SAPDV1.790e-2672.86GMP synthase (glutamine-hydrolyzing) n=3 Tax=Sapro... [more]
H3GA45_PHYRM1.210e-2568.57GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phyto... [more]
A0A421GYK1_9STRA4.120e-2568.57GMP synthase (glutamine-hydrolyzing) n=4 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13179contigH-canaliculatus_F_contig13179:1879..2740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.2e-30
Seed eggNOG ortholog2880.D7FZ84
Preferred nameGMPS
KEGG rclassRC00010,RC00204
KEGG koko:K01951,ko:K04257
KEGG ReactionR01230,R01231,R08244
KEGG Pathwayko00230,ko00983,ko01100,ko04740,map00230,map00983,map01100,map04740
KEGG ModuleM00050
GOsGO:0000902,GO:0000904,GO:0001101,GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006177,GO:0006325,GO:0006464,GO:0006508,GO:0006520,GO:0006541,GO:0006543,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010604,GO:0010952,GO:0016043,GO:0016054,GO:0016504,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0022008,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0035800,GO:0036211,GO:0040011,GO:0042221,GO:0042278,GO:0042330,GO:0042440,GO:0042451,GO:0042455,GO:0042493,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043436,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046037,GO:0046112,GO:0046128,GO:0046129,GO:0046148,GO:0046390,GO:0046395,GO:0046483,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0052547,GO:0055086,GO:0060255,GO:0061134,GO:0061564,GO:0065007,GO:0065009,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097485,GO:0098772,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901367,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:2000152,GO:2000158
EggNOG free text desc.GMP synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0519@1,KOG1622@2759
EC6.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04030
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.9142246-CDS-H-canaliculatus_F_contig13179:1878..19951622929054.9142246-CDS-H-canaliculatus_F_contig13179:1878..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13179 1879..1995 -
1696845662.4340937-CDS-H-canaliculatus_F_contig13179:1878..19951696845662.4340937-CDS-H-canaliculatus_F_contig13179:1878..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13179 1879..1995 -
1622929054.935666-CDS-H-canaliculatus_F_contig13179:2644..27401622929054.935666-CDS-H-canaliculatus_F_contig13179:2644..2740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13179 2645..2740 -
1696845662.4507983-CDS-H-canaliculatus_F_contig13179:2644..27401696845662.4507983-CDS-H-canaliculatus_F_contig13179:2644..2740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13179 2645..2740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13179.2612.1prot_H-canaliculatus_F_contig13179.2612.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13179 1879..2740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13179.2612.1

>prot_H-canaliculatus_F_contig13179.2612.1 ID=prot_H-canaliculatus_F_contig13179.2612.1|Name=mRNA_H-canaliculatus_F_contig13179.2612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
QGFVDVLSSENSEHAAIANTEKKMYGLQFHPEVTHSPLGKVILQAFVVDI
CGAPTDWNMSDIAEEFIREVR
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mRNA from alignment at H-canaliculatus_F_contig13179:1879..2740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13179.2612.1 ID=mRNA_H-canaliculatus_F_contig13179.2612.1|Name=mRNA_H-canaliculatus_F_contig13179.2612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=862bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13179:1879..2740- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGGTTCGTCGACGTCCTCTCCTCGGAGAACTCGGAGCACGCCGCGAT
CGCCAACACGGAGAAGAAGATGTACGGCCTGCAGTTCCACCCGGAGGTGG
GTGGGTGCGAAAGGAAGAGGTAGGAAGAGATACGGCTGTAGGTGAGCAGC
AACGCGGGGGCAGAGTCTCTCGCCGCTTGCGAGATTGTTTTTCTTTTTTC
CTTTTTCCTGTTTTCTTTTTTTTTCCCATTTTTTTTTTTTCCTGTATTTT
TTGTTTCCTCCTTTTTCCCCCCCCATTTTTTGCCTCCTCCTTCTCTTTTC
CTCCTTTTTTTTTTAATTTCTTTCTATTTATGGAGGAGGAACGCCGCGAT
GGCCGACGTAGGCAACAGGTCCTCGTCCCACGGGGAGGTGGGTGCGACAG
GCACCTTCGACTCGCATCTGCGCTTGAAGCGAACAAGATCAATGCTTGCC
CTGCCGCCCATTCGTTCGTCATCACACAGCGAGGAGACGCCGGGACGAAG
CGGTGACTCCCCGGTGTGCCCCTGAGAGTAGCGTCTTTGCAAACCTTTTC
AACAACGGCAAAATAACACCTTAGGAGTTCCCCCCGAGGTACGTCGTCCG
AGACGTAAGCACCCCTCGAGGCTTCTGTCTGAGTTCCAAGCCTTTTTTTC
TCTATCTGTAAAACCCTTTCGTGGCGTTTTTGTAACTGTCTCGCCTCGCA
ACGTCGTCACTGTTGCTTGTCTCTCGCGTTTACAACGACGCGCAGGTGAC
ACATTCCCCCCTTGGAAAAGTCATCCTGCAGGCGTTCGTGGTGGACATCT
GCGGGGCCCCTACGGACTGGAACATGTCCGATATCGCGGAGGAGTTCATC
CGAGAGGTCCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13179:1879..2740-

>mRNA_H-canaliculatus_F_contig13179.2612.1 ID=mRNA_H-canaliculatus_F_contig13179.2612.1|Name=mRNA_H-canaliculatus_F_contig13179.2612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13179:1879..2740- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGGTTCGTCGACGTCCTCTCCTCGGAGAACTCGGAGCACGCCGCGAT
CGCCAACACGGAGAAGAAGATGTACGGCCTGCAGTTCCACCCGGAGCAGG
GGTTCGTCGACGTCCTCTCCTCGGAGAACTCGGAGCACGCCGCGATCGCC
AACACGGAGAAGAAGATGTACGGCCTGCAGTTCCACCCGGAGGTGACACA
TTCCCCCCTTGGAAAAGTCATCCTGCAGGCGTTCGTGGTGGACATCTGCG
GGGCCCCTACGGACTGGAACATGTCCGATATCGCGGAGGAGTTCATCCGA
GAGGTCCGTGTGACACATTCCCCCCTTGGAAAAGTCATCCTGCAGGCGTT
CGTGGTGGACATCTGCGGGGCCCCTACGGACTGGAACATGTCCGATATCG
CGGAGGAGTTCATCCGAGAGGTCCGT
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