mRNA_H-canaliculatus_F_contig13178.2611.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13178.2611.1
Unique NamemRNA_H-canaliculatus_F_contig13178.2611.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13178.2611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13178contigH-canaliculatus_F_contig13178:102..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size433
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.8445084-UTR-H-canaliculatus_F_contig13178:101..1611622929054.8445084-UTR-H-canaliculatus_F_contig13178:101..161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13178 102..161 +
1696845662.4092646-UTR-H-canaliculatus_F_contig13178:101..1611696845662.4092646-UTR-H-canaliculatus_F_contig13178:101..161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13178 102..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.863691-CDS-H-canaliculatus_F_contig13178:161..5331622929054.863691-CDS-H-canaliculatus_F_contig13178:161..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13178 162..533 +
1696845662.4201715-CDS-H-canaliculatus_F_contig13178:161..5331696845662.4201715-CDS-H-canaliculatus_F_contig13178:161..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13178 162..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13178.2611.1prot_H-canaliculatus_F_contig13178.2611.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13178 162..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13178.2611.1

>prot_H-canaliculatus_F_contig13178.2611.1 ID=prot_H-canaliculatus_F_contig13178.2611.1|Name=mRNA_H-canaliculatus_F_contig13178.2611.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MGKIFRRNCASDLCDVRRSMKSPRTVANRTHVCVNRRTSNNVDSFQRLVL
SFCHKVGLVTAKAGKTGEDGQHRQGQTATQPQHNRHLAPTRETSRLSLEK
RARRFGVVLSPCSEAHLPNVPAAL
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mRNA from alignment at H-canaliculatus_F_contig13178:102..533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13178.2611.1 ID=mRNA_H-canaliculatus_F_contig13178.2611.1|Name=mRNA_H-canaliculatus_F_contig13178.2611.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13178:102..533+ (Hapterophycus canaliculatus Oshoro5f female)
ATCACGAACAGAGGGCGCGGAACGAAAAGAAGACAGGCGGAGAGGAAGAG
GTGACGGAGGATGGGAAAAATTTTCCGGCGCAATTGCGCATCCGATCTTT
GCGACGTCCGGCGCTCGATGAAGTCACCGCGAACGGTTGCAAACAGAACT
CATGTCTGCGTTAATAGACGAACGTCCAACAATGTGGACTCCTTTCAACG
CCTTGTGCTCAGCTTCTGTCACAAGGTAGGGCTCGTCACAGCGAAAGCGG
GCAAAACAGGAGAAGATGGGCAACATCGACAGGGACAAACCGCAACACAA
CCGCAACACAACCGGCACCTAGCACCAACGCGGGAAACCTCACGGCTGTC
CTTGGAGAAACGAGCTCGAAGGTTTGGCGTCGTTCTCTCACCTTGCTCCG
AGGCACATCTTCCGAACGTCCCGGCAGCCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13178:102..533+

>mRNA_H-canaliculatus_F_contig13178.2611.1 ID=mRNA_H-canaliculatus_F_contig13178.2611.1|Name=mRNA_H-canaliculatus_F_contig13178.2611.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13178:102..533+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAAAATTTTCCGGCGCAATTGCGCATCCGATCTTTGCGACGTCCG
GCGCTCGATGAAGTCACCGCGAACGGTTGCAAACAGAACTCATGTCTGCG
TTAATAGACGAACGTCCAACAATGTGGACTCCTTTCAACGCCTTGTGCTC
AGCTTCTGTCACAAGGTAGGGCTCGTCACAGCGAAAGCGGGCAAAACAGG
AGAAGATGGGCAACATCGACAGGGACAAACCGCAACACAACCGCAACACA
ACCGGCACCTAGCACCAACGCGGGAAACCTCACGGCTGTCCTTGGAGAAA
CGAGCTCGAAGGTTTGGCGTCGTTCTCTCACCTTGCTCCGAGGCACATCT
TCCGAACGTCCCGGCAGCCCTTATGGGAAAAATTTTCCGGCGCAATTGCG
CATCCGATCTTTGCGACGTCCGGCGCTCGATGAAGTCACCGCGAACGGTT
GCAAACAGAACTCATGTCTGCGTTAATAGACGAACGTCCAACAATGTGGA
CTCCTTTCAACGCCTTGTGCTCAGCTTCTGTCACAAGGTAGGGCTCGTCA
CAGCGAAAGCGGGCAAAACAGGAGAAGATGGGCAACATCGACAGGGACAA
ACCGCAACACAACCGCAACACAACCGGCACCTAGCACCAACGCGGGAAAC
CTCACGGCTGTCCTTGGAGAAACGAGCTCGAAGGTTTGGCGTCGTTCTCT
CACCTTGCTCCGAGGCACATCTTCCGAACGTCCCGGCAGCCCTT
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