mRNA_H-canaliculatus_F_contig1317.2609.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1317.2609.1 vs. uniprot
Match: D7G4H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H0_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.270e-31 Identity = 86/139 (61.87%), Postives = 92/139 (66.19%), Query Frame = 3
Query: 336 VHLKTRPKKKAILAARDAEVERANRELLRQMTRIFTTPSELLPVADSAANG-RGEGLGPCLSINVLCRKRELERIATENKTWAKHLQEVSSSYNVDVWERDRKANKKVMERLRTVRYVKEKNNPEEYSRRGVRRLRKQV 749
+HLKTRPKK AILA+RDA+VERANR+LLRQMTRIFTTPS LLPV DSA G RGEGLG CLSINVLCRKRELERIA ENKTW VRY + K PEE+SRRGV LRKQ
Sbjct: 1 MHLKTRPKKMAILASRDAQVERANRDLLRQMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVLCRKRELERIAMENKTW--------------------------------VRYERAKATPEEFSRRGVTHLRKQA 107
BLAST of mRNA_H-canaliculatus_F_contig1317.2609.1 vs. uniprot
Match: A0A6H5JHR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.400e-20 Identity = 76/166 (45.78%), Postives = 81/166 (48.80%), Query Frame = 3
Query: 336 VHLKTRPKKKAILAARDAEVERANRELLRQ---------------------------MTRIFTTPSELLPVADSAANG-RGEGLGPCLSINVLCRKRELERIATENKTWAKHLQEVSSSYNVDVWERDRKANKKVMERLRTVRYVKEKNNPEEYSRRGVRRLRKQV 749
+HLKTRPKK A+LA+RDA+VERANR Q MTRIFTTPS LLPV DSA G RG GLG CLSINVLCRKRELERI ENKTWA PEE+ RRGV LRKQ
Sbjct: 1 MHLKTRPKKMAMLASRDAQVERANRTSANQLGTFRIAAEVEYFYLSKSFAGLSSPLQMTRIFTTPSTLLPVHDSANGGSRGGGLGRCLSINVLCRKRELERIVMENKTWA---------------------------------------TPEEFGRRGVTHLRKQA 127
BLAST of mRNA_H-canaliculatus_F_contig1317.2609.1 vs. uniprot
Match: A0A0N7L428_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L428_PLAHL) HSP 1 Score: 55.1 bits (131), Expect = 8.530e-5 Identity = 44/140 (31.43%), Postives = 68/140 (48.57%), Query Frame = 3
Query: 258 KRLEEISRRPPGT--GTVDNTPPYTVHLVHLKTRPKKKAILAARDAEVERANRELLRQMTRIFTTPSELLPVADSAANGRGEGLGPCLSINVLCRKRELERIATENKTWAKHLQEVSSSYNVDVWERDRKANKKVMERLR 671
+R +EI R T ++DN P+ HL+ KK+ + R AE+ER NR LL +MT I + + + + S+N RKREL+RI TEN+ + +Q +Y+ WE D K N++ +R
Sbjct: 21 QRCQEIHRSKLYTIKSSIDNGEPHRP--THLRKNMKKEQMKEDRYAEIERENRILLEKMTMIMQ---------GEKLDNKNQSVAYAHSLNKGRRKRELQRITTENQAILRRIQMREPTYDHVQWEEDAKKNERYAANIR 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1317.2609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1317.2609.1 >prot_H-canaliculatus_F_contig1317.2609.1 ID=prot_H-canaliculatus_F_contig1317.2609.1|Name=mRNA_H-canaliculatus_F_contig1317.2609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1090bp MSNKDPVAQHLATREQPAAPRIVGTLLPRQKAKFRAHHEKRLEEISRRPPback to top mRNA from alignment at H-canaliculatus_F_contig1317:12604..22199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1317.2609.1 ID=mRNA_H-canaliculatus_F_contig1317.2609.1|Name=mRNA_H-canaliculatus_F_contig1317.2609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1317:12604..22199- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1317:12604..22199- >mRNA_H-canaliculatus_F_contig1317.2609.1 ID=mRNA_H-canaliculatus_F_contig1317.2609.1|Name=mRNA_H-canaliculatus_F_contig1317.2609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1317:12604..22199- (Hapterophycus canaliculatus Oshoro5f female)back to top |