mRNA_H-canaliculatus_F_contig13169.2608.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13169.2608.1
Unique NamemRNA_H-canaliculatus_F_contig13169.2608.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13169.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13169contigH-canaliculatus_F_contig13169:2402..3190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size789
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13169.2608.1prot_H-canaliculatus_F_contig13169.2608.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13169 2424..2843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.334922-UTR-H-canaliculatus_F_contig13169:2401..24231622929054.334922-UTR-H-canaliculatus_F_contig13169:2401..2423Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13169 2402..2423 +
1696845662.1719432-UTR-H-canaliculatus_F_contig13169:2401..24231696845662.1719432-UTR-H-canaliculatus_F_contig13169:2401..2423Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13169 2402..2423 +
1622929054.3657775-UTR-H-canaliculatus_F_contig13169:2843..31901622929054.3657775-UTR-H-canaliculatus_F_contig13169:2843..3190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13169 2844..3190 +
1696845662.1974053-UTR-H-canaliculatus_F_contig13169:2843..31901696845662.1974053-UTR-H-canaliculatus_F_contig13169:2843..3190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13169 2844..3190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.3511248-CDS-H-canaliculatus_F_contig13169:2423..28431622929054.3511248-CDS-H-canaliculatus_F_contig13169:2423..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 2424..2843 +
1696845662.1857746-CDS-H-canaliculatus_F_contig13169:2423..28431696845662.1857746-CDS-H-canaliculatus_F_contig13169:2423..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 2424..2843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13169.2608.1

>prot_H-canaliculatus_F_contig13169.2608.1 ID=prot_H-canaliculatus_F_contig13169.2608.1|Name=mRNA_H-canaliculatus_F_contig13169.2608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MRRFGARTRRGACGCVVATSPGGGGRQAGRHAGREVGGAMEAWWTSEVLA
GCCLFLLTLTLGRFRRARVRARSEARGRPSGGRTDDPGNRVLAGSFPRRK
KTGLFLLSCRLFLFPPRRPMRVAARDAFVLVRVEKYLRG*
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mRNA from alignment at H-canaliculatus_F_contig13169:2402..3190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13169.2608.1 ID=mRNA_H-canaliculatus_F_contig13169.2608.1|Name=mRNA_H-canaliculatus_F_contig13169.2608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=789bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13169:2402..3190+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTCGGCGATGAGGCGACTCGATGAGGCGATTCGGCGCGCGAACGAGAC
GGGGCGCGTGTGGCTGTGTAGTAGCGACGTCCCCTGGTGGAGGAGGCAGG
CAGGCAGGCAGGCATGCAGGAAGGGAGGTGGGGGGCGCGATGGAGGCTTG
GTGGACGAGCGAGGTGCTTGCTGGCTGTTGCCTCTTTCTGCTTACGTTAA
CTCTCGGCCGATTCCGCCGGGCGCGCGTGCGGGCACGAAGCGAGGCAAGA
GGGCGACCGAGCGGAGGACGGACGGACGACCCGGGGAACCGCGTTCTTGC
AGGGTCGTTTCCGAGACGGAAAAAAACAGGTCTTTTTTTGTTGTCTTGTC
GTTTGTTTTTGTTCCCGCCCCGCCGTCCGATGCGCGTCGCGGCTCGCGAT
GCTTTTGTTTTGGTTAGGGTGGAGAAATACCTCCGGGGGTAGACATGGCC
GCTGGGTGAGCCACGGCGAAGGTGTGCCAAGTGTCTTCGCGCACAAGTCG
GGGTTGAAAAAGCGGGAGATCTTCTTCCACACGAGTACGAACGGCACTCA
CGCCGCCCGGAGACGGCACGAGACGAGACGAGATGAGATGAGATGAGATG
ACGAGACGTACGCAAGAGAGGAGAGAGCGAGCACGAGGGCGAACACCCGC
ACGCGCTCGGGAACCGACGCGCAGCGGCGGAGGGGCAGGTCTCGCAGCAC
CGCGTGCTGCACTCGCGAGCACTGGGAGGGGCGACCGAGCTGCGATCCCG
GAACGATTGAAGTTGACTGGGTCTGAGTTGAGCTTAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13169:2402..3190+

>mRNA_H-canaliculatus_F_contig13169.2608.1 ID=mRNA_H-canaliculatus_F_contig13169.2608.1|Name=mRNA_H-canaliculatus_F_contig13169.2608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13169:2402..3190+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCGATTCGGCGCGCGAACGAGACGGGGCGCGTGTGGCTGTGTAGT
AGCGACGTCCCCTGGTGGAGGAGGCAGGCAGGCAGGCAGGCATGCAGGAA
GGGAGGTGGGGGGCGCGATGGAGGCTTGGTGGACGAGCGAGGTGCTTGCT
GGCTGTTGCCTCTTTCTGCTTACGTTAACTCTCGGCCGATTCCGCCGGGC
GCGCGTGCGGGCACGAAGCGAGGCAAGAGGGCGACCGAGCGGAGGACGGA
CGGACGACCCGGGGAACCGCGTTCTTGCAGGGTCGTTTCCGAGACGGAAA
AAAACAGGTCTTTTTTTGTTGTCTTGTCGTTTGTTTTTGTTCCCGCCCCG
CCGTCCGATGCGCGTCGCGGCTCGCGATGCTTTTGTTTTGGTTAGGGTGG
AGAAATACCTCCGGGGGTAGATGAGGCGATTCGGCGCGCGAACGAGACGG
GGCGCGTGTGGCTGTGTAGTAGCGACGTCCCCTGGTGGAGGAGGCAGGCA
GGCAGGCAGGCATGCAGGAAGGGAGGTGGGGGGCGCGATGGAGGCTTGGT
GGACGAGCGAGGTGCTTGCTGGCTGTTGCCTCTTTCTGCTTACGTTAACT
CTCGGCCGATTCCGCCGGGCGCGCGTGCGGGCACGAAGCGAGGCAAGAGG
GCGACCGAGCGGAGGACGGACGGACGACCCGGGGAACCGCGTTCTTGCAG
GGTCGTTTCCGAGACGGAAAAAAACAGGTCTTTTTTTGTTGTCTTGTCGT
TTGTTTTTGTTCCCGCCCCGCCGTCCGATGCGCGTCGCGGCTCGCGATGC
TTTTGTTTTGGTTAGGGTGGAGAAATACCTCCGGGGGTAG
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