mRNA_H-canaliculatus_F_contig13164.2605.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13164.2605.1
Unique NamemRNA_H-canaliculatus_F_contig13164.2605.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13164.2605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13164contigH-canaliculatus_F_contig13164:1980..2763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size631
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13164.2605.1prot_H-canaliculatus_F_contig13164.2605.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13164 2009..2572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.1365035-UTR-H-canaliculatus_F_contig13164:1979..20081622929054.1365035-UTR-H-canaliculatus_F_contig13164:1979..2008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13164 1980..2008 +
1696845662.0734656-UTR-H-canaliculatus_F_contig13164:1979..20081696845662.0734656-UTR-H-canaliculatus_F_contig13164:1979..2008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13164 1980..2008 +
1622929054.2011676-UTR-H-canaliculatus_F_contig13164:2572..27631622929054.2011676-UTR-H-canaliculatus_F_contig13164:2572..2763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13164 2573..2763 +
1696845662.113246-UTR-H-canaliculatus_F_contig13164:2572..27631696845662.113246-UTR-H-canaliculatus_F_contig13164:2572..2763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13164 2573..2763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.154232-CDS-H-canaliculatus_F_contig13164:2008..22921622929054.154232-CDS-H-canaliculatus_F_contig13164:2008..2292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13164 2009..2292 +
1696845662.08851-CDS-H-canaliculatus_F_contig13164:2008..22921696845662.08851-CDS-H-canaliculatus_F_contig13164:2008..2292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13164 2009..2292 +
1622929054.1725118-CDS-H-canaliculatus_F_contig13164:2445..25721622929054.1725118-CDS-H-canaliculatus_F_contig13164:2445..2572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13164 2446..2572 +
1696845662.1005185-CDS-H-canaliculatus_F_contig13164:2445..25721696845662.1005185-CDS-H-canaliculatus_F_contig13164:2445..2572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13164 2446..2572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13164.2605.1

>prot_H-canaliculatus_F_contig13164.2605.1 ID=prot_H-canaliculatus_F_contig13164.2605.1|Name=mRNA_H-canaliculatus_F_contig13164.2605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
MEGLPLFGTELARGRVESLAVTDNARAWTRTNLEGEMLWDCSCSNFSLDA
PSVLVGCVNHCRHTTRPAATAALYFRIINEIVKTPSPVKITPVPRRFQYG
GKTCCFVLSCSIPGSVWGKPGPSDRVGMLSCSGVGV*
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mRNA from alignment at H-canaliculatus_F_contig13164:1980..2763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13164.2605.1 ID=mRNA_H-canaliculatus_F_contig13164.2605.1|Name=mRNA_H-canaliculatus_F_contig13164.2605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=784bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13164:1980..2763+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTCGTGGGAGCTGGGGGTTTCAACAGCATGGAAGGATTACCCCTGTTC
GGGACAGAGCTCGCGAGAGGTCGTGTTGAATCCCTCGCGGTGACGGATAA
CGCGCGGGCTTGGACAAGAACAAACTTGGAAGGCGAAATGTTGTGGGATT
GCTCTTGTTCCAATTTTTCGTTAGATGCACCTTCTGTTCTTGTGGGCTGT
GTGAATCACTGCCGTCATACCACGAGGCCCGCCGCGACTGCTGCGTTGTA
CTTCCGCATCATCAACGAGATAGTTAAGACACCATCCCCCGTCAAGATAA
CCCCAGTTCCACGGAGGGAAGATTTGACGATCCCTATTCTTGCCCTCTTC
CGCTGGGATTAGGCTGGCGATGATTTTTTTTTAAAGAATCAACAACACCA
AAGGACTACTCTCCGCTGAGACATAACGATACTGACCCAGGGGTTTTTTC
TCTAATTCCTCACAGTGAGGTTTCAGTATGGTGGGAAAACATGTTGTTTT
GTTTTGTCCTGCTCTATTCCCGGAAGTGTTTGGGGAAAGCCCGGGCCGAG
CGACAGGGTAGGTATGTTATCTTGCAGTGGTGTCGGAGTCTGAAGGGTTG
GCCGAAAAGCATGACTAGTGCTCGTGACCTTGACCGTACCCGGATGTCCT
TCGTCCAGGGCGTGCAACACACAGGACGGGCTTCATGAAGGAAGCACGAG
TCAACATTTTTTTGCACAAGTGTTGCAGCTGGAATCCCCCGCCCTCCCCC
CGTCCCCTCCCGCCCCTCTCGTGCACAAGCAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13164:1980..2763+

>mRNA_H-canaliculatus_F_contig13164.2605.1 ID=mRNA_H-canaliculatus_F_contig13164.2605.1|Name=mRNA_H-canaliculatus_F_contig13164.2605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13164:1980..2763+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGGATTACCCCTGTTCGGGACAGAGCTCGCGAGAGGTCGTGTTGA
ATCCCTCGCGGTGACGGATAACGCGCGGGCTTGGACAAGAACAAACTTGG
AAGGCGAAATGTTGTGGGATTGCTCTTGTTCCAATTTTTCGTTAGATGCA
CCTTCTGTTCTTGTGGGCTGTGTGAATCACTGCCGTCATACCACGAGGCC
CGCCGCGACTGCTGCGTTGTACTTCCGCATCATCAACGAGATAGTTAAGA
CACCATCCCCCGTCAAGATAACCCCAGTTCCACGATGGAAGGATTACCCC
TGTTCGGGACAGAGCTCGCGAGAGGTCGTGTTGAATCCCTCGCGGTGACG
GATAACGCGCGGGCTTGGACAAGAACAAACTTGGAAGGCGAAATGTTGTG
GGATTGCTCTTGTTCCAATTTTTCGTTAGATGCACCTTCTGTTCTTGTGG
GCTGTGTGAATCACTGCCGTCATACCACGAGGCCCGCCGCGACTGCTGCG
TTGTACTTCCGCATCATCAACGAGATAGTTAAGACACCATCCCCCGTCAA
GATAACCCCAGTTCCACGGAGGTTTCAGTATGGTGGGAAAACATGTTGTT
TTGTTTTGTCCTGCTCTATTCCCGGAAGTGTTTGGGGAAAGCCCGGGCCG
AGCGACAGGGTAGGTATGTTATCTTGCAGTGGTGTCGGAGTCTGAGAGGT
TTCAGTATGGTGGGAAAACATGTTGTTTTGTTTTGTCCTGCTCTATTCCC
GGAAGTGTTTGGGGAAAGCCCGGGCCGAGCGACAGGGTAGGTATGTTATC
TTGCAGTGGTGTCGGAGTCTGA
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