mRNA_H-canaliculatus_F_contig1316.2601.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1316.2601.1
Unique NamemRNA_H-canaliculatus_F_contig1316.2601.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1316.2601.1 vs. uniprot
Match: D7FJC8_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.970e-15
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:  136 AAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAA 285
            A+QLGQI+++QE++ A+ IEL+AQD NGWTPLMHAC RGH+SVVG LL A
Sbjct:   50 ASQLGQIDVIQELIAADAIELNAQDGNGWTPLMHACARGHRSVVGALLTA 99
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BLAST of mRNA_H-canaliculatus_F_contig1316.2601.1 vs. uniprot
Match: A0A1M8A2X3_MALS4 (Similar to S.cerevisiae protein NAS6 (Assembly chaperone for the 19S proteasome regulatory particle base) n=2 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A2X3_MALS4)

HSP 1 Score: 57.0 bits (136), Expect = 9.500e-6
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   22 HPIHRAGRSGDICVVRRFLNKP---AILNRRDLEDMTCLHWAAQLGQI-EIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLL 279
            HP+H+A   G +  V+  L+     A L R D +    LHWA    +  EIV  ++ A  ++++A D +GWTPLM A   G + +V TLL
Sbjct:    5 HPLHQACLDGHLSRVQELLHTDEGRASLTRADADGRQPLHWAVTSDEKREIVDALLGAGDVDVNAPDASGWTPLMIASSSGARRIVQTLL 94
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BLAST of mRNA_H-canaliculatus_F_contig1316.2601.1 vs. uniprot
Match: A0A317SJU1_9PEZI (Ankyrin (Fragment) n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SJU1_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 3.870e-5
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   25 PIHRAGRSGDICVVRRFLNKPAILNRRDLEDMTCLHWAAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHAC 243
            P+H A   G+I VV+  L   A +   D   MT LH+AA+ G I+IV+ ++   G++++A+D+ G TPL  AC
Sbjct:   60 PLHLAAAWGNIGVVQGLLLGGAQVRATDDFGMTPLHYAAKQGDIQIVEMILRDRGVDVNAEDHLGRTPLYIAC 132
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BLAST of mRNA_H-canaliculatus_F_contig1316.2601.1 vs. uniprot
Match: UPI00193E6145 (photoreceptor ankyrin repeat protein n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E6145)

HSP 1 Score: 55.5 bits (132), Expect = 6.350e-5
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   46 SGDICVVRRFLNKPAI-LNRRDLEDMTCLHWAAQLGQIEIVQEMVV-ANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAA 285
            +G + ++   +  P I +N+ D E  T LH+AAQ GQ+E V  ++   +GIE+DA+++ G+TPLM A  +G       LL A
Sbjct:  149 NGPVSILESIIQLPGIDINKPDNEGNTPLHFAAQAGQVEAVNFLLSRCSGIEVDARNHLGFTPLMKAAIQGRTKCAKLLLFA 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1316.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJC8_ECTSI8.970e-1570.00Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A1M8A2X3_MALS49.500e-636.67Similar to S.cerevisiae protein NAS6 (Assembly cha... [more]
A0A317SJU1_9PEZI3.870e-539.73Ankyrin (Fragment) n=1 Tax=Tuber magnatum TaxID=42... [more]
UPI00193E61456.350e-537.80photoreceptor ankyrin repeat protein n=1 Tax=Nilap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1316contigH-canaliculatus_F_contig1316:18713..21947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D7FJC8
Preferred nameANKRD42
KEGG koko:K06694,ko:K15502,ko:K17593
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-14_005850.1
Exons5
Model size1017
Cds size1017
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1316.2601.1prot_H-canaliculatus_F_contig1316.2601.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1316 18713..21947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.7210875-CDS-H-canaliculatus_F_contig1316:18712..189721622929053.7210875-CDS-H-canaliculatus_F_contig1316:18712..18972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 18713..18972 -
1696845661.908347-CDS-H-canaliculatus_F_contig1316:18712..189721696845661.908347-CDS-H-canaliculatus_F_contig1316:18712..18972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 18713..18972 -
1622929053.7374532-CDS-H-canaliculatus_F_contig1316:19047..193001622929053.7374532-CDS-H-canaliculatus_F_contig1316:19047..19300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 19048..19300 -
1696845661.9229982-CDS-H-canaliculatus_F_contig1316:19047..193001696845661.9229982-CDS-H-canaliculatus_F_contig1316:19047..19300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 19048..19300 -
1622929053.74954-CDS-H-canaliculatus_F_contig1316:19859..199911622929053.74954-CDS-H-canaliculatus_F_contig1316:19859..19991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 19860..19991 -
1696845661.9325473-CDS-H-canaliculatus_F_contig1316:19859..199911696845661.9325473-CDS-H-canaliculatus_F_contig1316:19859..19991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 19860..19991 -
1622929053.7693496-CDS-H-canaliculatus_F_contig1316:20543..207811622929053.7693496-CDS-H-canaliculatus_F_contig1316:20543..20781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 20544..20781 -
1696845661.9410644-CDS-H-canaliculatus_F_contig1316:20543..207811696845661.9410644-CDS-H-canaliculatus_F_contig1316:20543..20781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 20544..20781 -
1622929053.784546-CDS-H-canaliculatus_F_contig1316:21813..219471622929053.784546-CDS-H-canaliculatus_F_contig1316:21813..21947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 21814..21947 -
1696845661.950002-CDS-H-canaliculatus_F_contig1316:21813..219471696845661.950002-CDS-H-canaliculatus_F_contig1316:21813..21947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 21814..21947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1316.2601.1

>prot_H-canaliculatus_F_contig1316.2601.1 ID=prot_H-canaliculatus_F_contig1316.2601.1|Name=mRNA_H-canaliculatus_F_contig1316.2601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bp
MGSGNSTHPIHRAGRSGDICVVRRFLNKPAILNRRDLEDMTCLHWAAQLG
QIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLE
IESHDGRTATHRAATWKRLGPLDQLIEAGADVRHEARNKWTPLHCAAAAG
DAHACAILVEAGADVHAKDSFGLKPLDVVADLTAADLVERCLTRGRPSSV
MDLDNPPPPSQGTIPHPSSSSSSSSSFRCPSLPPKLESIDSAGTAVVGAD
ISEGKEGPKETLTGASVKRRIGSGDAAVTAKRGSWSRPVRPCPVPEGDTG
VGDDTLPSSSSVEFSSAPTKLSKSHEDIRELEERQRREM
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mRNA from alignment at H-canaliculatus_F_contig1316:18713..21947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1316.2601.1 ID=mRNA_H-canaliculatus_F_contig1316.2601.1|Name=mRNA_H-canaliculatus_F_contig1316.2601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3235bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:18713..21947- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTTCAGGGAATTCAACACATCCGATCCATCGGGCAGGGCGAAGCGG
GGATATATGCGTTGTGAGAAGGTTTCTGAACAAACCCGCAATCTTGAATC
GCCGTGATCTTGAAGACATGACTTGCTTGCACTGGTGAGAGAATCAAGTA
TTCACGCCGCTCGTCGAGATGTCCTACTGCTATTCCTCTCCGCAGCAGCG
GTACTCGTAGTGCTTTGTCAGTAACATAATGAGTTCAACACTACACACAC
CTAGACCGTCCTATGAGCGCTGACTTATTCGTGGGTCTGGTCAAGTAACC
CATGTCACGGACTGGGGGGTTCTTTCTGTTCTTTGCATCTTCCCACCACG
ACTCGGCACGCCTTTTTTACAGTACGCTGAGGAACTTCCTTGGGTAAAAA
CATACCCTCGGAAAACTTTTTATACGCACAACGAGAGCTAGCCTCCGTCA
AGACGAGCAGTAACTCTAAAAATATTTATGTCGACAGCCTGATACAATAC
TCACCGCAGGAGAGATGAAATTCAGTGGGCGCTGCGACGATATCTAAACA
AATCAATCTACCAGAGACCAAATGACAGACTGTAAACGATGATGGTGTCG
AAATCCGATTTAAAAACAAAAACTCCGAGTATAAAGACCTACTGCTGTTG
ATTGATTGTACCAACACGAGTGTCGCATCGCTCCTTCGTACAGTCAATGT
CGTTAGTTGACTTTGCGATACAAACAAGGTGAAAAATAGAGGCCGGCAAT
GCCATGGCTTGGAGGGTGTAGATCTCATCCAATTATCATTGCGTGGATGC
CCTTTTCAGCTCATTTCGCCTATCTGCGAGTGCGCGTTGAGGCACACGAA
GCTGATGGTGTCCTCGAAATGCATTGAACACGAACAAGAATAACTGCATC
CTGAGGGAACTTTGCGCGGACAGAACTGTCCGAGCTGTTCGGAGTAACGT
TGCCACGTCCGGAAGGACCACACTTACTTCCCGCAATCAGTGATGTGGGT
CCTCATAGAATAGCTTGCAGGTTATTTCAAAGAGCAACATATCAACACCA
GACTTGTCTAAACTTTGGCAGGAACTCCATCATATAATCACCCTTTGCAG
CGAAGTCTCTCATAACGTGCCACACGTTCCGGACACGATCCTTCTTTCAC
TTTTGGTTCTCTCAAGGGCTGCCCAGCTAGGTCAGATCGAAATCGTCCAG
GAAATGGTTGTAGCAAACGGAATAGAGCTGGATGCACAGGACTACAACGG
CTGGACGCCACTCATGCACGCCTGCTGCCGCGGGCACAAGTCGGTTGTTG
GGACGCTGCTGGCCGCCGGCGCGAGCTTGGAAATCGAGAGCCACGACGGA
CGAACGGCGACCCATCGAGCAGCCACGTGGAAAAGGCTCGGTCCGCTCGA
CCAGGTACCAACAGAAGAGAGTGGGCCGGAGGCGTACTCGAGCTGCAAAA
ATAAAGCTCTAAGTTAATGCCTAGGAGAAAGAAGGCGGGAATTTTTCTTC
CGAACATCCCTCAAGCAGAGGTCGCATGTAGAGGTACTCGCCAACACCAG
CAAGCGATGTCTGATAAGAGGCCCTCCGCAGAATCTTTCCAGTGTCTTCG
TCACTTTTCTCTTTATCTTTGCGCCTCTTCGCTGCAAAGAAAGCGGCCTC
CAAAGGTAGCTAATCCCTGCTGAAGCGAGACTCCTGGGGCGATTTGACGG
TTGTTGACTCTTAGCCAACACCTTCTCTCTTACCACTGACGGCCTGACGA
ACTGATGGAGTTACACGGAAAAGCACTCATGAATTACATGCATGAGAGTA
AGTGGGTAAGAGGGATTGACAAGAGGGTGACTTGACTTCGCTGGGGACAT
AACATGGTGAGCAAAAGGGAGAGTCCGCGAGGTCAAAGTTGTCCGGGGTG
TCAAACTGAGAGCGAAAAGCTTCCCTTCCGTCGCTGCGCTTCGCCACTAT
GACCAGCTCATCGAAGCGGGTGCAGATGTGCGCCATGAGGCGCGTAACAA
GTGGACCCCGCTTCATTGTGCGGCAGCCGCCGGAGACGCTCACGCTTGCG
CGATTCTAGTCGAGGCAGGAGCTGACGTGCACGCAAAGGTAGAGATACAA
ACAGGACAACAGCAAAACTACCAGCGGAAAAGAACAAAGATATAGACGAC
AGATTTCCGAAATCCATGCGTTAATCATGCAACGGACGGGAACAAACTCC
TCTGTGTTACATGATGCTAGTAACGTCGCGTAATCCTGTCGTTCGATTGA
GTGCAGCACCCACTCGAAAGGCCGCACTCTGCGTGGTATTTATTCCAAGC
ACCCTTGACGACACAGCGTTCCTCAAAGCGTGTCAAAAATGTTTCCTTGT
TTACTGACATTGTGCGTACCTCGCAACAGATGAACTCCACGTACATGGAT
GAAGCTCCTTTCCTTACACAACACTTGCAAATCAGAATCCATACCTCTCA
GAGCAGAGGAAACTACAACATGCCGAAATCTGGGCGGGGACTTGCAGTGG
AAGGCTCACACAGCACGTGTGACGACATTAAAAACTAAAGTAGAACGCTC
ACCATTGTGCGGTCGTTCATGCGTTCGTGTTGCCCTCCTTCTCCTCCCTG
GCCCTTTCCTTCCACTTCTTCAACGTGTTCTCGCTCGCCGACGCAAGGAT
TCCTTCGGCCTCAAGCCCCTTGATGTCGTCGCGGATTTGACCGCGGCGGA
CCTCGTGGAGAGATGCCTCACCAGAGGGCGACCGTCATCGGTGATGGACT
TGGACAATCCACCACCACCATCGCAAGGCACGATACCGCACCCCTCCTCC
TCCTCCTCCTCCTCGTCTTCCTTCCGGTGCCCATCGTTGCCGCCAAAGTT
GGAGTCAATCGATTCAGCTGGGACTGCCGTCGTGGGAGCCGATATAAGCG
GTAGAACGACGCCGGGGTTATCATCTCTGGGCGTTGACGAAGGGCCAGAA
GGGTGGGGAGGAGGACGGGGGCGAGAGGGAAAGGAGGGTCCGAAGGAGAC
GTTGACAGGAGCTTCCGTCAAGCGGCGAATCGGCAGCGGCGACGCCGCTG
TTACCGCAAAACGCGGGAGTTGGAGCAGACCTGTGCGACCTTGTCCTGTA
CCTGAGGGCGACACAGGCGTCGGTGATGATACTCTGCCGAGCTCCAGCTC
AGTGGAGTTCAGCTCCGCGCCCACAAAACTCTCGAAATCACATGAGGATA
TCAGAGAGTTGGAGGAGCGACAAAGGCGCGAGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1316:18713..21947-

>mRNA_H-canaliculatus_F_contig1316.2601.1 ID=mRNA_H-canaliculatus_F_contig1316.2601.1|Name=mRNA_H-canaliculatus_F_contig1316.2601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2034bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:18713..21947- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTTCAGGGAATTCAACACATCCGATCCATCGGGCAGGGCGAAGCGG
GGATATATGCGTTGTGAGAAGGTTTCTGAACAAACCCGCAATCTTGAATC
GCCGTGATCTTGAAGACATGACTTGCTTGCACTGATGGGTTCAGGGAATT
CAACACATCCGATCCATCGGGCAGGGCGAAGCGGGGATATATGCGTTGTG
AGAAGGTTTCTGAACAAACCCGCAATCTTGAATCGCCGTGATCTTGAAGA
CATGACTTGCTTGCACTGGGCTGCCCAGCTAGGTCAGATCGAAATCGTCC
AGGAAATGGTTGTAGCAAACGGAATAGAGCTGGATGCACAGGACTACAAC
GGCTGGACGCCACTCATGCACGCCTGCTGCCGCGGGCACAAGTCGGTTGT
TGGGACGCTGCTGGCCGCCGGCGCGAGCTTGGAAATCGAGAGCCACGACG
GACGAACGGCGACCCATCGAGCAGCCACGTGGAAAAGGCTCGGTCCGCTC
GACCAGGGCTGCCCAGCTAGGTCAGATCGAAATCGTCCAGGAAATGGTTG
TAGCAAACGGAATAGAGCTGGATGCACAGGACTACAACGGCTGGACGCCA
CTCATGCACGCCTGCTGCCGCGGGCACAAGTCGGTTGTTGGGACGCTGCT
GGCCGCCGGCGCGAGCTTGGAAATCGAGAGCCACGACGGACGAACGGCGA
CCCATCGAGCAGCCACGTGGAAAAGGCTCGGTCCGCTCGACCAGCTCATC
GAAGCGGGTGCAGATGTGCGCCATGAGGCGCGTAACAAGTGGACCCCGCT
TCATTGTGCGGCAGCCGCCGGAGACGCTCACGCTTGCGCGATTCTAGTCG
AGGCAGGAGCTGACGTGCACGCAAAGCTCATCGAAGCGGGTGCAGATGTG
CGCCATGAGGCGCGTAACAAGTGGACCCCGCTTCATTGTGCGGCAGCCGC
CGGAGACGCTCACGCTTGCGCGATTCTAGTCGAGGCAGGAGCTGACGTGC
ACGCAAAGGATTCCTTCGGCCTCAAGCCCCTTGATGTCGTCGCGGATTTG
ACCGCGGCGGACCTCGTGGAGAGATGCCTCACCAGAGGGCGACCGTCATC
GGTGATGGACTTGGACAATCCACCACCACCATCGCAAGGCACGATACCGC
ACCCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTTCCGGTGCCCATCGTTG
CCGCCAAAGTTGGAGTCAATCGATTCAGCTGGGACTGCCGTCGTGGGAGC
CGATATAAGCGGATTCCTTCGGCCTCAAGCCCCTTGATGTCGTCGCGGAT
TTGACCGCGGCGGACCTCGTGGAGAGATGCCTCACCAGAGGGCGACCGTC
ATCGGTGATGGACTTGGACAATCCACCACCACCATCGCAAGGCACGATAC
CGCACCCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTTCCGGTGCCCATCG
TTGCCGCCAAAGTTGGAGTCAATCGATTCAGCTGGGACTGCCGTCGTGGG
AGCCGATATAAGCGAGGGAAAGGAGGGTCCGAAGGAGACGTTGACAGGAG
CTTCCGTCAAGCGGCGAATCGGCAGCGGCGACGCCGCTGTTACCGCAAAA
CGCGGGAGTTGGAGCAGACCTGTGCGACCTTGTCCTGTACCTGAGGGCGA
CACAGGCGTCGGTGATGATACTCTGCCGAGCTCCAGCTCAGTGGAGTTCA
GCTCCGCGCCCACAAAACTCTCGAAATCACATGAGGATATCAGAGAGTTG
GAGGAGCGACAAAGGCGCGAGATGAGGGAAAGGAGGGTCCGAAGGAGACG
TTGACAGGAGCTTCCGTCAAGCGGCGAATCGGCAGCGGCGACGCCGCTGT
TACCGCAAAACGCGGGAGTTGGAGCAGACCTGTGCGACCTTGTCCTGTAC
CTGAGGGCGACACAGGCGTCGGTGATGATACTCTGCCGAGCTCCAGCTCA
GTGGAGTTCAGCTCCGCGCCCACAAAACTCTCGAAATCACATGAGGATAT
CAGAGAGTTGGAGGAGCGACAAAGGCGCGAGATG
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