mRNA_H-canaliculatus_F_contig13152.2596.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13152.2596.1
Unique NamemRNA_H-canaliculatus_F_contig13152.2596.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13152.2596.1 vs. uniprot
Match: A0A6H5JZS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS1_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.470e-27
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:  187 RGVTPLMFLMQAMRPDKKRGDEPMANVLAVINKIVEDNLKALESLAMVGLVPKVMTILEMRGAWEEDE 390
            RGVTPLM+LMQAM+P+ ++G+E MANVLAVINKIVEDNLKALESLA+VGLVPKVMTILE RGAW+E+E
Sbjct:  423 RGVTPLMYLMQAMKPEDRQGEEAMANVLAVINKIVEDNLKALESLAVVGLVPKVMTILETRGAWDEEE 490
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BLAST of mRNA_H-canaliculatus_F_contig13152.2596.1 vs. uniprot
Match: D8LLC1_ECTSI (MEKK and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.660e-26
Identity = 55/67 (82.09%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:  187 RGVTPLMFLMQAMRPDKKRGDEPMANVLAVINKIVEDNLKALESLAMVGLVPKVMTILEMRGAWEED 387
            RGVTPLM+LMQAM+P+ ++G+E MANVLAVINKIVEDNLKALESLA+VGLVPKVMTILE RGAW+E+
Sbjct:  746 RGVTPLMYLMQAMKPEDRQGEEAMANVLAVINKIVEDNLKALESLAVVGLVPKVMTILETRGAWDEE 812
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13152.2596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZS1_9PHAE3.470e-2782.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLC1_ECTSI1.660e-2682.09MEKK and related serine/threonine protein kinases ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13152contigH-canaliculatus_F_contig13152:893..1808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue9e-23
Seed eggNOG ortholog2880.D8LLC1
Preferred nameCDC15
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
Ec32 ortholog descriptionMEKK and related serine/threonine protein kinases amardillo repeat-containing protein
Ec32 orthologEc-27_002070.1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size391
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.104061-CDS-H-canaliculatus_F_contig13152:892..11771622929053.104061-CDS-H-canaliculatus_F_contig13152:892..1177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13152 893..1177 +
1696845661.6474319-CDS-H-canaliculatus_F_contig13152:892..11771696845661.6474319-CDS-H-canaliculatus_F_contig13152:892..1177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13152 893..1177 +
1622929053.1195407-CDS-H-canaliculatus_F_contig13152:1703..18081622929053.1195407-CDS-H-canaliculatus_F_contig13152:1703..1808Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13152 1704..1808 +
1696845661.6606715-CDS-H-canaliculatus_F_contig13152:1703..18081696845661.6606715-CDS-H-canaliculatus_F_contig13152:1703..1808Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13152 1704..1808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13152.2596.1prot_H-canaliculatus_F_contig13152.2596.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13152 893..1808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13152.2596.1

>prot_H-canaliculatus_F_contig13152.2596.1 ID=prot_H-canaliculatus_F_contig13152.2596.1|Name=mRNA_H-canaliculatus_F_contig13152.2596.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
APTDARAARFSPFPPPTPLPSVRRPLWNSHLCLLIIVVRLASLTWFRSGW
VSAVARGRRLRFRGVTPLMFLMQAMRPDKKRGDEPMANVLAVINKIVEDN
LKALESLAMVGLVPKVMTILEMRGAWEEDE
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mRNA from alignment at H-canaliculatus_F_contig13152:893..1808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13152.2596.1 ID=mRNA_H-canaliculatus_F_contig13152.2596.1|Name=mRNA_H-canaliculatus_F_contig13152.2596.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=916bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13152:893..1808+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCGACCGATGCGCGTGCCGCTCGTTTCTCTCCCTTCCCGCCCCCCAC
GCCGCTGCCGTCCGTCCGCCGCCCGCTCTGGAACTCTCATTTGTGTCTGT
TGATCATCGTCGTCCGGTTGGCCTCTCTTACTTGGTTTCGTTCGGGGTGG
GTTTCCGCTGTCGCGCGGGGGCGGCGCCTTCGGTTCAGGGGCGTGACCCC
GTTGATGTTCCTCATGCAAGCGATGAGGCCCGACAAGAAGCGGGGGGATG
AGCCCATGGCCAACGTGCTCGCGGTGATAAACAAGGCGAGCTGCTGCTGC
TGCTGCTGCTGCAGCCCACCTTGACGGTGCTTGTTCTTTGCTTGTTTTGT
GCCTTAGCGTCTCGCCTGCTGGGGTTGGGAAGATGCGGATGGACGAACGA
CGGTGCTCTCCTCTGTGCCTTTCGGCGATGGGGCTTACTCTCCGCCTCGT
CGCTGTTGCTGCCGCAGCCGCTTCCCCCGACCTCTTCGGAGAGGCTAATT
GTGACGTATCGAAATCTACGGATTCTTCCCAAGAACCGAGACGATTTTCG
CATCGACCCAATCACACCGTGGCTGTAGTCAGACTCTACCTGTCGTACGG
CGAGCAGTAGGGTAGGCAGTAGCTCCCGCGGTAGCTCAAAGCCTGAACGC
GCGGCGGACCCGTTGTTGAATGAGCCGGCATCTGACCACCTCTAGCCTTC
TGGCAATCGCTTCTCTGTCCGACCGACGATTAATCGCTCCCCCCCGACCC
CCCTCACACGGCGCCATGGCCCGGACAACGCCAACGCCAACGCCAACGCC
AACAACGACAGATCGTCGAGGACAACCTTAAGGCCCTCGAGAGTCTTGCC
ATGGTGGGGCTCGTTCCGAAGGTGATGACCATTCTGGAGATGAGGGGGGC
GTGGGAAGAAGACGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13152:893..1808+

>mRNA_H-canaliculatus_F_contig13152.2596.1 ID=mRNA_H-canaliculatus_F_contig13152.2596.1|Name=mRNA_H-canaliculatus_F_contig13152.2596.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13152:893..1808+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCGACCGATGCGCGTGCCGCTCGTTTCTCTCCCTTCCCGCCCCCCAC
GCCGCTGCCGTCCGTCCGCCGCCCGCTCTGGAACTCTCATTTGTGTCTGT
TGATCATCGTCGTCCGGTTGGCCTCTCTTACTTGGTTTCGTTCGGGGTGG
GTTTCCGCTGTCGCGCGGGGGCGGCGCCTTCGGTTCAGGGGCGTGACCCC
GTTGATGTTCCTCATGCAAGCGATGAGGCCCGACAAGAAGCGGGGGGATG
AGCCCATGGCCAACGTGCTCGCGGTGATAAACAAGGCCCCGACCGATGCG
CGTGCCGCTCGTTTCTCTCCCTTCCCGCCCCCCACGCCGCTGCCGTCCGT
CCGCCGCCCGCTCTGGAACTCTCATTTGTGTCTGTTGATCATCGTCGTCC
GGTTGGCCTCTCTTACTTGGTTTCGTTCGGGGTGGGTTTCCGCTGTCGCG
CGGGGGCGGCGCCTTCGGTTCAGGGGCGTGACCCCGTTGATGTTCCTCAT
GCAAGCGATGAGGCCCGACAAGAAGCGGGGGGATGAGCCCATGGCCAACG
TGCTCGCGGTGATAAACAAGATCGTCGAGGACAACCTTAAGGCCCTCGAG
AGTCTTGCCATGGTGGGGCTCGTTCCGAAGGTGATGACCATTCTGGAGAT
GAGGGGGGCGTGGGAAGAAGACGAGATCGTCGAGGACAACCTTAAGGCCC
TCGAGAGTCTTGCCATGGTGGGGCTCGTTCCGAAGGTGATGACCATTCTG
GAGATGAGGGGGGCGTGGGAAGAAGACGAG
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