mRNA_H-canaliculatus_F_contig13148.2594.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13148.2594.1
Unique NamemRNA_H-canaliculatus_F_contig13148.2594.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 2.440e-98
Identity = 161/254 (63.39%), Postives = 193/254 (75.98%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YP--LLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P   + W    T ++GR   RQPT+AELAAHDGES+TP +AQHKLGKAINK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G H F RAA TDRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:   90 IPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGR---RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 1.010e-97
Identity = 163/254 (64.17%), Postives = 195/254 (76.77%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YP--LLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P   + W    T ++GR   RQPT+AELAAHDGES+TP +AQHKLGKAINK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:  383 IPGTVLVERMGDAIKELNQEHAISVEILKGIIPPSWVEWALEPTGETGR---RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 633
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 2.130e-97
Identity = 161/252 (63.89%), Postives = 189/252 (75.00%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YPLLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P L W        G   RRQPT+AELAAHDGE +TP +AQHKLGKAINK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HA  RAAPTDRARE   NEF YA RRAL IEEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:   81 IPGTVLVERMGDAIKELNQEHGVSVEILKGILPPL-WVEWALQPPGETGRRQPTVAELAAHDGEYTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHALLRAAPTDRAREIQSNEFGYATRRALEIEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 331
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 7.920e-97
Identity = 158/254 (62.20%), Postives = 193/254 (75.98%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YP--LLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P   + W    T ++GR   RQPT+AELAAHDGES+TP +AQHKLGKA+ K+QL++ MESL  +PQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALG+EEFLA  CPRCHR RE+E ITT+H R C RDG QVNMHEP K+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:   90 IPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGR---RQPTVAELAAHDGESTTPRKAQHKLGKAV-KIQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREREIITTVHARTCPRDGEQVNMHEPSKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 339
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 1.310e-96
Identity = 160/253 (63.24%), Postives = 194/253 (76.68%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YP--LLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKG 760
            +P  +LV RMGD + ++++         K   P   + W    T ++GR   RQPT+AELAAHDGES+TP +AQH+LGKA+NK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKG
Sbjct:  313 IPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGR---RQPTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKG 562
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 8.410e-94
Identity = 164/254 (64.57%), Postives = 195/254 (76.77%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YP--LLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P   + W    T ++GR   RQPT+AELAAHDGES+TP +AQHKLGKAINK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALGIEEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:  837 IPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGR---RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 1087
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.410e-93
Identity = 152/243 (62.55%), Postives = 184/243 (75.72%), Query Frame = 2 
Query:   38 MGDRLSKVSKSMDYRKRF*KD*YPLLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            MGD + ++++         K   P   W       +G   RRQPT+AELAAHD ES+TP +AQHKLGKA++K+QL++ MESL  LPQEAVP T+ +P+GG+E++ +AY R RSSQG+G HAF +AAPT+RARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:    1 MGDAIKELNQEHGVSVEILKGILPP-SWVEWALEPAGETRRRQPTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 242
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 5.340e-93
Identity = 161/252 (63.89%), Postives = 191/252 (75.79%), Query Frame = 2 
Query:   11 MPKCILVARMGDRLSKVSKSMDYRKRF*KD*YPLLGWRGP*TNQSGRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            +P  +LV RMGD + ++++         K   P   W       +G   RRQPT+AELAAHDGES+TP +AQHKLGKAINK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   R KGI
Sbjct:  794 IPGTVLVERMGDAIKELNQEHAISVEILKGILPP-SWVEWALEPAGETGRRQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGI 1044
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 4.460e-92
Identity = 148/207 (71.50%), Postives = 174/207 (84.06%), Query Frame = 2 
Query:  146 GRYERRQPTMAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            G   RRQPT+AELAA+DGES+TP +AQHKLGKA+NK+QL++ +ESLG LPQEAVPPT  +P+GG+E++ +AY R RSSQG+G HAF RAAPTDRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM +VIRPGAL+NASS   RNKG+
Sbjct:  512 GETGRRQPTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGV 718
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Match: A0A6H5JNP7_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP7_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 1.140e-90
Identity = 144/197 (73.10%), Postives = 167/197 (84.77%), Query Frame = 2 
Query:  176 AELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQRDPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRRALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALSKALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSD-RNKGI 763
            AELAAHDGES+TP +AQHKLGKA+NK+QL++ MESL  LPQEAVPPT+ +P+GG+E++ +AY R RSSQG+G HAF RAAP+DRARE   NEF YA RRALG+EEFLA  CPRCHR RE E ITT+H R C RDGAQVNMHEPLK+ALS+ALNG+ V+HD+ESG P TGERNLSM IVIRPGAL+NASS   RNKGI
Sbjct:  277 AELAAHDGESTTPRKAQHKLGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPSDRAREIRSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGI 473
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13148.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ53_9PHAE2.440e-9863.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ8_9PHAE1.010e-9764.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LLI3_9PHAE2.130e-9763.89Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK7_9PHAE7.920e-9762.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ7_9PHAE1.310e-9663.24Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMQ2_9PHAE8.410e-9464.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDZ4_9PHAE1.410e-9362.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE5.340e-9363.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC7_9PHAE4.460e-9271.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNP7_9PHAE1.140e-9073.10ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13148contigH-canaliculatus_F_contig13148:746..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size844
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13148.2594.1prot_H-canaliculatus_F_contig13148.2594.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13148 918..1523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.9622355-UTR-H-canaliculatus_F_contig13148:745..9171622929052.9622355-UTR-H-canaliculatus_F_contig13148:745..917Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13148 746..917 +
1696845661.5682669-UTR-H-canaliculatus_F_contig13148:745..9171696845661.5682669-UTR-H-canaliculatus_F_contig13148:745..917Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13148 746..917 +
1622929053.0005836-UTR-H-canaliculatus_F_contig13148:1523..15891622929053.0005836-UTR-H-canaliculatus_F_contig13148:1523..1589Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13148 1524..1589 +
1696845661.593988-UTR-H-canaliculatus_F_contig13148:1523..15891696845661.593988-UTR-H-canaliculatus_F_contig13148:1523..1589Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13148 1524..1589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.9811804-CDS-H-canaliculatus_F_contig13148:917..15231622929052.9811804-CDS-H-canaliculatus_F_contig13148:917..1523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13148 918..1523 +
1696845661.5820644-CDS-H-canaliculatus_F_contig13148:917..15231696845661.5820644-CDS-H-canaliculatus_F_contig13148:917..1523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13148 918..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13148.2594.1

>prot_H-canaliculatus_F_contig13148.2594.1 ID=prot_H-canaliculatus_F_contig13148.2594.1|Name=mRNA_H-canaliculatus_F_contig13148.2594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MAELAAHDGESSTPSQAQHKLGKAINKVQLDRSMESLGQLPQEAVPPTQR
DPFGGRESQGIAYERVRSSQGKGAHAFSRAAPTDRARETGPNEFTYALRR
ALGIEEFLASGCPRCHRRREQEGITTLHGRACHRDGAQVNMHEPLKFALS
KALNGMGVRHDLESGTPLTGERNLSMGIVIRPGALSNASSSDRNKGIYSS
T*
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mRNA from alignment at H-canaliculatus_F_contig13148:746..1589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13148.2594.1 ID=mRNA_H-canaliculatus_F_contig13148.2594.1|Name=mRNA_H-canaliculatus_F_contig13148.2594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=844bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13148:746..1589+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGAACGGTATGCCGAAATGTATCTTGGTCGCAAGGATGGGAGATCGAT
TGAGTAAAGTAAGCAAGAGCATGGATTATCGGAAGAGGTTTTAAAAGGAC
TAATACCCCCTTCTTGGGTGGCGTGGGCCTTAGACCAATCAATCCGGAAG
ATACGAGAGACGTCAACCCACCATGGCGGAACTAGCAGCGCACGATGGAG
AATCAAGTACGCCGAGTCAAGCCCAACACAAGCTGGGAAAAGCCATCAAC
AAGGTTCAACTGGACCGGTCCATGGAATCCCTGGGGCAACTACCTCAGGA
GGCGGTACCACCAACACAGAGAGACCCTTTTGGAGGGAGAGAGTCTCAAG
GGATAGCTTATGAAAGAGTGAGGAGCAGCCAGGGCAAAGGAGCTCATGCA
TTCTCGAGGGCTGCTCCTACAGACAGAGCACGAGAGACAGGTCCCAACGA
ATTCACCTACGCCTTGCGACGCGCCCTGGGAATCGAGGAGTTCTTAGCGT
CAGGATGTCCCAGATGCCATAGACGCAGGGAACAGGAGGGCATCACCACA
TTGCATGGAAGGGCCTGCCACCGGGATGGAGCGCAGGTCAACATGCACGA
GCCGTTGAAGTTCGCTTTATCGAAAGCACTCAACGGCATGGGGGTCAGAC
ACGACCTGGAAAGTGGAACACCTCTCACCGGGGAAAGGAATCTGAGTATG
GGCATCGTGATCAGGCCAGGTGCACTCTCCAACGCGTCGTCCTCGGACCG
CAACAAAGGTATATACTCCTCGACGTGACCCACGCAGATCCGCAAGCACA
GGTACACTTGCGGAATGGTAGCGCAACCAGCGATGGAACCGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13148:746..1589+

>mRNA_H-canaliculatus_F_contig13148.2594.1 ID=mRNA_H-canaliculatus_F_contig13148.2594.1|Name=mRNA_H-canaliculatus_F_contig13148.2594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13148:746..1589+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGAACTAGCAGCGCACGATGGAGAATCAAGTACGCCGAGTCAAGC
CCAACACAAGCTGGGAAAAGCCATCAACAAGGTTCAACTGGACCGGTCCA
TGGAATCCCTGGGGCAACTACCTCAGGAGGCGGTACCACCAACACAGAGA
GACCCTTTTGGAGGGAGAGAGTCTCAAGGGATAGCTTATGAAAGAGTGAG
GAGCAGCCAGGGCAAAGGAGCTCATGCATTCTCGAGGGCTGCTCCTACAG
ACAGAGCACGAGAGACAGGTCCCAACGAATTCACCTACGCCTTGCGACGC
GCCCTGGGAATCGAGGAGTTCTTAGCGTCAGGATGTCCCAGATGCCATAG
ACGCAGGGAACAGGAGGGCATCACCACATTGCATGGAAGGGCCTGCCACC
GGGATGGAGCGCAGGTCAACATGCACGAGCCGTTGAAGTTCGCTTTATCG
AAAGCACTCAACGGCATGGGGGTCAGACACGACCTGGAAAGTGGAACACC
TCTCACCGGGGAAAGGAATCTGAGTATGGGCATCGTGATCAGGCCAGGTG
CACTCTCCAACGCGTCGTCCTCGGACCGCAACAAAGGTATATACTCCTCG
ACGTGAATGGCGGAACTAGCAGCGCACGATGGAGAATCAAGTACGCCGAG
TCAAGCCCAACACAAGCTGGGAAAAGCCATCAACAAGGTTCAACTGGACC
GGTCCATGGAATCCCTGGGGCAACTACCTCAGGAGGCGGTACCACCAACA
CAGAGAGACCCTTTTGGAGGGAGAGAGTCTCAAGGGATAGCTTATGAAAG
AGTGAGGAGCAGCCAGGGCAAAGGAGCTCATGCATTCTCGAGGGCTGCTC
CTACAGACAGAGCACGAGAGACAGGTCCCAACGAATTCACCTACGCCTTG
CGACGCGCCCTGGGAATCGAGGAGTTCTTAGCGTCAGGATGTCCCAGATG
CCATAGACGCAGGGAACAGGAGGGCATCACCACATTGCATGGAAGGGCCT
GCCACCGGGATGGAGCGCAGGTCAACATGCACGAGCCGTTGAAGTTCGCT
TTATCGAAAGCACTCAACGGCATGGGGGTCAGACACGACCTGGAAAGTGG
AACACCTCTCACCGGGGAAAGGAATCTGAGTATGGGCATCGTGATCAGGC
CAGGTGCACTCTCCAACGCGTCGTCCTCGGACCGCAACAAAGGTATATAC
TCCTCGACGTGA
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