mRNA_H-canaliculatus_F_contig13133.2586.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13133.2586.1
Unique NamemRNA_H-canaliculatus_F_contig13133.2586.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13133.2586.1 vs. uniprot
Match: D7G0Q9_ECTSI (MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q9_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 7.090e-31
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   13 MGELADAITPEEAEAHEVRRLRWILRVANNPGSCEEWYLGDERDGVRHGHGAAFFTSGDV 192
            M ELAD ITPEEAEAH+VRRLRWILRVANNPGSCEEWYLGDERDGVRHGHGAAF+TSGDV
Sbjct:    1 MSELADDITPEEAEAHDVRRLRWILRVANNPGSCEEWYLGDERDGVRHGHGAAFYTSGDV 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13133.2586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0Q9_ECTSI7.090e-3193.33MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13133contigH-canaliculatus_F_contig13133:78..3113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog2880.D7G0Q9
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMORN motif containing protein
Ec32 orthologEc-20_001350.1
Exons4
Model size495
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13133.2586.1prot_H-canaliculatus_F_contig13133.2586.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13133 78..3101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.8815527-CDS-H-canaliculatus_F_contig13133:77..2431622929051.8815527-CDS-H-canaliculatus_F_contig13133:77..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 78..243 -
1696845661.1389332-CDS-H-canaliculatus_F_contig13133:77..2431696845661.1389332-CDS-H-canaliculatus_F_contig13133:77..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 78..243 -
1622929051.92494-CDS-H-canaliculatus_F_contig13133:1234..13591622929051.92494-CDS-H-canaliculatus_F_contig13133:1234..1359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 1235..1359 -
1696845661.15021-CDS-H-canaliculatus_F_contig13133:1234..13591696845661.15021-CDS-H-canaliculatus_F_contig13133:1234..1359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 1235..1359 -
1622929051.940068-CDS-H-canaliculatus_F_contig13133:1845..19591622929051.940068-CDS-H-canaliculatus_F_contig13133:1845..1959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 1846..1959 -
1696845661.1602612-CDS-H-canaliculatus_F_contig13133:1845..19591696845661.1602612-CDS-H-canaliculatus_F_contig13133:1845..1959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 1846..1959 -
1622929051.9535227-CDS-H-canaliculatus_F_contig13133:3023..31011622929051.9535227-CDS-H-canaliculatus_F_contig13133:3023..3101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 3024..3101 -
1696845661.1710374-CDS-H-canaliculatus_F_contig13133:3023..31011696845661.1710374-CDS-H-canaliculatus_F_contig13133:3023..3101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13133 3024..3101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.9720066-UTR-H-canaliculatus_F_contig13133:3101..31131622929051.9720066-UTR-H-canaliculatus_F_contig13133:3101..3113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13133 3102..3113 -
1696845661.1845946-UTR-H-canaliculatus_F_contig13133:3101..31131696845661.1845946-UTR-H-canaliculatus_F_contig13133:3101..3113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13133 3102..3113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13133.2586.1

>prot_H-canaliculatus_F_contig13133.2586.1 ID=prot_H-canaliculatus_F_contig13133.2586.1|Name=mRNA_H-canaliculatus_F_contig13133.2586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=161bp
MGELADAITPEEAEAHEVRRLRWILRVANNPGSCEEWYLGDERDGVRHGH
GAAFFTSGDVYLGEWHRGAWHGRGTLTHMSGAKYTGHFEKGEQHGTGEFV
DVDGVRFRGEYRRGTRHGPGFMESPNGAQFEGWFREGVAHGDGILTWPDG
GKFIGKYVHGK
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mRNA from alignment at H-canaliculatus_F_contig13133:78..3113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13133.2586.1 ID=mRNA_H-canaliculatus_F_contig13133.2586.1|Name=mRNA_H-canaliculatus_F_contig13133.2586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3036bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13133:78..3113- (Hapterophycus canaliculatus Oshoro5f female)
CAGCAATCTTCAATGGGCGAATTGGCAGACGCGATCACCCCGGAGGAAGC
CGAGGCGCACGAAGTACGAAGACTTCGGTGGATATTGAGGGTGAGGAACT
GGTCATTTCTTCACGACAAGGCATTTGATGTCTAGTTAGACGGAAGATCC
AGCTACACACTTTGACTCGGGGTATTTTTTCGGCGGAGGGTGGCATAAAG
CGTGGCGTACCTTGCACGGAAACCATGTACGAGTACAAGCACTCCGCGGC
AGAGGCGACACGTACGGAGCGCGAATACAAGTGGTGGGTAGAAAAATGCA
GGAACACCTTCGTGCGTGAGGTCTGGTCCATAGCCTAGGTTACCATGCTT
GAGGGCGAAACGTAAAACGAGCAGGTGGAGATGATACTGGGAGTGACGCG
CTTTGTTGCTGCCACTGCGGTGTGTTCGGAGTACAGCAGCAGTGTTTTGT
GTCCAACGCCTTCCATTTCTTCTTTGCCGTACAGCCATTTTCCTTGTTTC
GTTGTGGTACATTGGCACGACATTTTTCAACCGACGCCCAGCATCTCTTT
GAACTCTTCGTGTTTCGGAACGTCCATGGACGATTCGGCGGCTTCCCTTG
TTGGGCTTTTGATCCTGCTCGTTTCAGAGGCCGTTGAAGACGATTCAACG
GGCGCACATGATGGACTTCAAAGATCGGCTCGACCATGGCTGTCTAGATT
TTGATCGGTACCGCGCATCTTTGGCTTTGACTGCCTGCGAATGATGCACG
AGTTTGCCGTCATCTCACAAAACCCCGCTCTGTTTTCCCGGTCGGGAATA
ACACATGAACCCTCCACGTTGTCATGAATTGAAGACGGAGGTCCGGATAG
ATTTATCAACCTAGCCGCCTTTTGCACTTTTAGCTCTTGTTTTTGCCTCC
TGTTGCGTTTTGGTCCCTGCTCTCATCTGTGAAAGGAGACAGACTTATTT
GTAAAATATTTCTTGCTTATTTTCATTCGTCAGAAGCGGCGGGCGATAAA
TGTGCCCCCTCCGATGTTTCGCACAAGCCCCCTCTTTTGCTCCGTGTACA
TTATTAATAGCGTACCAAGGAAGGCCGACCCGTTATTCGTGTTGAGCATG
TTCCCACAATCTGTGCCCATGTGCGTCTCTCGTCTCTGTTGTGCGCTTCC
GAAGGTGGCCAATAATCCAGGATCGTGCGAGGAGTGGTACCTTGGGGACG
AACGAGATGGAGTTAGACATGGTCACGGGGCGGCATTTTTTACTTCGGGG
GACGTTTATCTGGGAGAGGTGCGTGTGAAAAGATGAGACCGCATGCCGTT
GAATCGTGCCGTCAGTATTATGATTGTGGTTTTGTCACGGTCGTGGTGGT
TTTGGTTGCCGTGTGTGGGTGCTTCACTGATCGTTGACACAATACATTGA
AGTCTCGGCTATTGTTGCTGATGGTCGTTCAGGGTGTCGCTGTTTTTTGT
GGCATCGTTGTTTGTTATCTCCCAATGATTCCAAGAACGGGATGCAGCCA
TGAACGTCGACGCCACTCCCCCCCCCCCCTCCTCCCCCTGCACGCAAAGC
GAGCACCTTTTCTTCTAGAACAATGGAACCGCCTCCCCCGCAACCTGCTG
TTCCGTTCGACACATTTATTGGACAATGACGAGGGCAAACCCCAAAGAAC
GCGCCGGGCGCCCCGGCTCCCCGCGTTCCGTCCTATTTGTTGTGGTTCTG
GTGAATCTCACCACGACACCGCCACATCACTGCGCCACATTCCCTCCCTT
CCAGTGGCACCGAGGGGCGTGGCACGGACGAGGGACCCTCACGCACATGT
CGGGAGCCAAGTACACGGGGCACTTCGAGAAGGGGGAACAACACGGCACC
GGGGAGTTCGTAGACGTGGATGGCGTTAGGTGAGCGAGACAGACCGGGTG
GCGCGGGGTGTTTGGCGCCGGCGAGTGCGTGGCTTGCGTCCGTCGCCTCT
TGCCGCAGCCACGATGCTCGCAGCGGGCGGGCCTGCATTGCATCGCTGTG
CACGCGTCCTCCACGCACGCATGCAGACGCACGCGAACAAGCAGTCGTTG
TTCGCCGCGGCTGCTTCCAAACAAGAGCAGCCCGTGAGCACGGCGGAGGG
TGTGCGGGATGTCGGAGGTGGGCCGACAACCGGTCGAACGGTCGAGTGAT
GTAGAAAAGCGAGGGGCAGCAGGAAGATGCAAGGGGAAGGGTGCCGGGGG
CGAATGAAGGAAGGAAACCATAAAAAGATAGGAAATTGATGAAGAGGAGG
GGAGGGGAGAGATTGCCGAAGAAAAAAAAGGGTGAGGGAGCAGTGCTTTT
CCTCGAGGCCTCCCTGCTTTCTTCCCCCGCAAGTGTTCCCGCAAGCCAAA
AGGAGATCAGTAGCGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAA
GAAGAGAGCACGCGGAAAATGACAGCCGCTGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTGCACTCCGA
TACGTCACCACTTGGATCCATCCTATCGCTGCGAGTCGCGGCTGTGGTGG
CGTTCACCCAGTTCCACAAGATTCCGTCCGACAAAGAAGAAAGAGGAGAG
ATTTGCAACGCAAAGAACGCAGTCAAAGCAGACACCCTTGCCCTTCTCTC
CCCGCCATACTTCCTGGGACTTCATTCCCTTGTCCGGCCAAGTGCTGCTG
TTCGGCGAAATAGCGGCGGACACAATCGTTGCCGCATGCTTGATCCCCAG
CCGGCTTCGTTGTCATGCTACCCTCCGTATCGATCCTCCTCCTCCTCTCC
CTTCCCTCGTGCCCGTCATGCCCCGCCGTGTTCTGCTTATTTGCGTGCCG
TTTTCTCGCGTGGTCTTAAGGTTTCGGGGGGAGTATCGGCGAGGAACGCG
ACACGGACCCGGCTTCATGGAGAGCCCGAACGGTGCTCAGTTCGAGGGCT
GGTTCCGAGAGGGAGTTGCACACGGGGACGGCATTCTGACGTGGCCGGAC
GGGGGAAAATTCATCGGGAAGTACGTCCACGGAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13133:78..3113-

>mRNA_H-canaliculatus_F_contig13133.2586.1 ID=mRNA_H-canaliculatus_F_contig13133.2586.1|Name=mRNA_H-canaliculatus_F_contig13133.2586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13133:78..3113- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGAATTGGCAGACGCGATCACCCCGGAGGAAGCCGAGGCGCACGA
AGTACGAAGACTTCGGTGGATATTGAGGATGGGCGAATTGGCAGACGCGA
TCACCCCGGAGGAAGCCGAGGCGCACGAAGTACGAAGACTTCGGTGGATA
TTGAGGGTGGCCAATAATCCAGGATCGTGCGAGGAGTGGTACCTTGGGGA
CGAACGAGATGGAGTTAGACATGGTCACGGGGCGGCATTTTTTACTTCGG
GGGACGTTTATCTGGGAGAGGTGGCCAATAATCCAGGATCGTGCGAGGAG
TGGTACCTTGGGGACGAACGAGATGGAGTTAGACATGGTCACGGGGCGGC
ATTTTTTACTTCGGGGGACGTTTATCTGGGAGAGTGGCACCGAGGGGCGT
GGCACGGACGAGGGACCCTCACGCACATGTCGGGAGCCAAGTACACGGGG
CACTTCGAGAAGGGGGAACAACACGGCACCGGGGAGTTCGTAGACGTGGA
TGGCGTTAGTGGCACCGAGGGGCGTGGCACGGACGAGGGACCCTCACGCA
CATGTCGGGAGCCAAGTACACGGGGCACTTCGAGAAGGGGGAACAACACG
GCACCGGGGAGTTCGTAGACGTGGATGGCGTTAGGTTTCGGGGGGAGTAT
CGGCGAGGAACGCGACACGGACCCGGCTTCATGGAGAGCCCGAACGGTGC
TCAGTTCGAGGGCTGGTTCCGAGAGGGAGTTGCACACGGGGACGGCATTC
TGACGTGGCCGGACGGGGGAAAATTCATCGGGAAGTACGTCCACGGAAAG
GTTTCGGGGGGAGTATCGGCGAGGAACGCGACACGGACCCGGCTTCATGG
AGAGCCCGAACGGTGCTCAGTTCGAGGGCTGGTTCCGAGAGGGAGTTGCA
CACGGGGACGGCATTCTGACGTGGCCGGACGGGGGAAAATTCATCGGGAA
GTACGTCCACGGAAAG
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