mRNA_H-canaliculatus_F_contig13128.2583.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13128.2583.1
Unique NamemRNA_H-canaliculatus_F_contig13128.2583.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13128.2583.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.400e-20
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 3 
Query:   84 LNIRRQALRIGRKLEEFKKIMMFLGQNDVCGVRRVLGQALKDGKSPFAILGTLQSAFEGRFR 269
            LN++RQA RIGRKL+E+KK+MMF G  D+ GVRRVL QALKDGKSP A+LGTL++AF+GR+R
Sbjct:    2 LNLKRQASRIGRKLQEYKKVMMFHGDIDIPGVRRVLAQALKDGKSPIAMLGTLEAAFQGRYR 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13128.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA62_9PHAE4.400e-2070.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13128contigH-canaliculatus_F_contig13128:2219..2541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13128.2583.1prot_H-canaliculatus_F_contig13128.2583.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13128 2230..2538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.699959-UTR-H-canaliculatus_F_contig13128:2218..22291622929050.699959-UTR-H-canaliculatus_F_contig13128:2218..2229Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13128 2219..2229 +
1696845660.8127387-UTR-H-canaliculatus_F_contig13128:2218..22291696845660.8127387-UTR-H-canaliculatus_F_contig13128:2218..2229Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13128 2219..2229 +
1622929050.7280233-UTR-H-canaliculatus_F_contig13128:2538..25411622929050.7280233-UTR-H-canaliculatus_F_contig13128:2538..2541Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13128 2539..2541 +
1696845660.8311443-UTR-H-canaliculatus_F_contig13128:2538..25411696845660.8311443-UTR-H-canaliculatus_F_contig13128:2538..2541Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13128 2539..2541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.7164555-CDS-H-canaliculatus_F_contig13128:2229..25381622929050.7164555-CDS-H-canaliculatus_F_contig13128:2229..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13128 2230..2538 +
1696845660.822033-CDS-H-canaliculatus_F_contig13128:2229..25381696845660.822033-CDS-H-canaliculatus_F_contig13128:2229..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13128 2230..2538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13128.2583.1

>prot_H-canaliculatus_F_contig13128.2583.1 ID=prot_H-canaliculatus_F_contig13128.2583.1|Name=mRNA_H-canaliculatus_F_contig13128.2583.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MTMKQTEERARAATASVEATRLKTLNIRRQALRIGRKLEEFKKIMMFLGQ
NDVCGVRRVLGQALKDGKSPFAILGTLQSAFEGRFRTHEQAGKKYSGQRS
PH*
back to top

mRNA from alignment at H-canaliculatus_F_contig13128:2219..2541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13128.2583.1 ID=mRNA_H-canaliculatus_F_contig13128.2583.1|Name=mRNA_H-canaliculatus_F_contig13128.2583.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=323bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13128:2219..2541+ (Hapterophycus canaliculatus Oshoro5f female)
ACTACGAGTATATGACGATGAAGCAGACGGAGGAGCGAGCGCGGGCCGCC
ACTGCCAGTGTGGAAGCTACCCGTTTGAAGACGTTGAACATCCGGAGGCA
GGCGTTGCGGATCGGCAGGAAACTCGAGGAATTCAAGAAGATCATGATGT
TCCTCGGCCAGAACGACGTCTGCGGTGTGCGGCGGGTCTTGGGGCAGGCG
CTCAAGGATGGCAAGTCGCCGTTCGCGATCTTGGGTACTCTCCAGTCCGC
CTTCGAAGGCAGATTCCGTACGCATGAGCAAGCGGGGAAGAAGTATTCGG
GCCAACGTTCGCCACATTGATCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13128:2219..2541+

>mRNA_H-canaliculatus_F_contig13128.2583.1 ID=mRNA_H-canaliculatus_F_contig13128.2583.1|Name=mRNA_H-canaliculatus_F_contig13128.2583.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13128:2219..2541+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGATGAAGCAGACGGAGGAGCGAGCGCGGGCCGCCACTGCCAGTGT
GGAAGCTACCCGTTTGAAGACGTTGAACATCCGGAGGCAGGCGTTGCGGA
TCGGCAGGAAACTCGAGGAATTCAAGAAGATCATGATGTTCCTCGGCCAG
AACGACGTCTGCGGTGTGCGGCGGGTCTTGGGGCAGGCGCTCAAGGATGG
CAAGTCGCCGTTCGCGATCTTGGGTACTCTCCAGTCCGCCTTCGAAGGCA
GATTCCGTACGCATGAGCAAGCGGGGAAGAAGTATTCGGGCCAACGTTCG
CCACATTGAATGACGATGAAGCAGACGGAGGAGCGAGCGCGGGCCGCCAC
TGCCAGTGTGGAAGCTACCCGTTTGAAGACGTTGAACATCCGGAGGCAGG
CGTTGCGGATCGGCAGGAAACTCGAGGAATTCAAGAAGATCATGATGTTC
CTCGGCCAGAACGACGTCTGCGGTGTGCGGCGGGTCTTGGGGCAGGCGCT
CAAGGATGGCAAGTCGCCGTTCGCGATCTTGGGTACTCTCCAGTCCGCCT
TCGAAGGCAGATTCCGTACGCATGAGCAAGCGGGGAAGAAGTATTCGGGC
CAACGTTCGCCACATTGA
back to top