mRNA_H-canaliculatus_F_contig13121.2580.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13121.2580.1
Unique NamemRNA_H-canaliculatus_F_contig13121.2580.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13121.2580.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-9
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  508 KRRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGISTAS 621
            K RTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGI+ AS
Sbjct:   52 KSRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIANAS 89
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BLAST of mRNA_H-canaliculatus_F_contig13121.2580.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-8
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  508 KRRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGISTAS 621
            K RTEAFSAVPVGAQAYFNSQAGVG LAVIPGGI+ AS
Sbjct:  741 KSRTEAFSAVPVGAQAYFNSQAGVGMLAVIPGGIADAS 778
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13121.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3P6_ECTSI1.840e-992.11Origin recognition complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5LEG7_9PHAE1.770e-889.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13121contigH-canaliculatus_F_contig13121:609..2459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog2880.D7G3P6
KEGG koko:K02604,ko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
EggNOG free text desc.DNA replication origin binding
EggNOG OGsCOG5575@1,KOG2928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size624
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13121.2580.1prot_H-canaliculatus_F_contig13121.2580.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13121 609..2458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.4767568-CDS-H-canaliculatus_F_contig13121:608..10221622929050.4767568-CDS-H-canaliculatus_F_contig13121:608..1022Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 609..1022 +
1696845660.7434454-CDS-H-canaliculatus_F_contig13121:608..10221696845660.7434454-CDS-H-canaliculatus_F_contig13121:608..1022Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 609..1022 +
1622929050.4905264-CDS-H-canaliculatus_F_contig13121:1318..14141622929050.4905264-CDS-H-canaliculatus_F_contig13121:1318..1414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 1319..1414 +
1696845660.75626-CDS-H-canaliculatus_F_contig13121:1318..14141696845660.75626-CDS-H-canaliculatus_F_contig13121:1318..1414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 1319..1414 +
1622929050.5286255-CDS-H-canaliculatus_F_contig13121:2347..24581622929050.5286255-CDS-H-canaliculatus_F_contig13121:2347..2458Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 2348..2458 +
1696845660.7717824-CDS-H-canaliculatus_F_contig13121:2347..24581696845660.7717824-CDS-H-canaliculatus_F_contig13121:2347..2458Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13121 2348..2458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13121.2580.1

>prot_H-canaliculatus_F_contig13121.2580.1 ID=prot_H-canaliculatus_F_contig13121.2580.1|Name=mRNA_H-canaliculatus_F_contig13121.2580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=207bp
ASTGGSGGKAKAKTATPRGRGKAAKSAPSTTATATATPSPKASNPKGKGK
KRGVPQQKQRQQQPSAAPGAKKKRKEKNEGSKLLSKRCSTKATKGDAGGG
RKKRAKAARERREALEAMWSSGEEGGDGGGFTDSSDDEDDDLSVDSGDSG
DDGPGGGYNGGNGNRNRLKKRRTEAFSAVPVGAQAYFNSQAGVGTLAVIP
GGISTAS
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mRNA from alignment at H-canaliculatus_F_contig13121:609..2459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13121.2580.1 ID=mRNA_H-canaliculatus_F_contig13121.2580.1|Name=mRNA_H-canaliculatus_F_contig13121.2580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1851bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13121:609..2459+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTCGACGGGCGGCTCGGGAGGAAAGGCCAAGGCCAAGACAGCGACCCC
GAGAGGCCGAGGGAAAGCCGCGAAGTCCGCGCCGTCAACCACGGCCACGG
CCACGGCGACGCCGAGCCCCAAGGCCAGCAACCCCAAGGGCAAGGGCAAA
AAGAGGGGGGTCCCGCAGCAGAAGCAGCGGCAGCAGCAACCCTCGGCCGC
TCCCGGGGCCAAGAAGAAAAGGAAGGAGAAAAATGAAGGGTCGAAGTTGC
TGTCGAAGAGATGTTCGACGAAGGCCACCAAGGGGGACGCGGGAGGAGGC
AGGAAGAAGAGGGCCAAGGCCGCCAGGGAGAGGAGGGAAGCGCTGGAGGC
GATGTGGTCGTCCGGAGAGGAGGGCGGGGACGGGGGAGGCTTTACCGACT
CCAGCGACGACGAGGTGGGTGGGTGGGTCGGTCGGTGGGTGTTCGTGCGT
GGGAGACGGGAATGTGGGTGATCTCGTCAGGGACGGCGGGGGTCAACCGG
GGGAAGAAGGAACACACCCCCCCCGAGTTGGGGGTGGGGCGAGGTGGAGT
CATGCCGGATGTTGCCGAAATGAATGTCGTTGGCTTTCGTCCTTCTCGAT
TCGAGTTTGCTGGTTGGCTCTCCCCCCGCTCTGCCCTTCGGCTCGGCCTC
GCGTAACGTACGTGTGGCGTTTGCCCCCGTCCCCGGCGGTTAATGGCCTC
GATCAAACAGGACGACGATCTCAGCGTCGACAGCGGTGACAGCGGCGACG
ATGGGCCGGGCGGCGGGTACAACGGCGGCAACGGCAACCGCAACCGCCTC
AAGAAGGTACAGCACGCGCTGGGTGTAGAAAAGCGCAGGGTGGGACGAAC
TCGACTCTTCGCTCCTGCTCCATGCAAGCACCTGGTTCAGCGAAGCTCTG
GGTGGGCGCAAACACGCGCACGGCACAGGAGGAAGGCCACGTCGCAAGCC
CGGCTTGGTTGTTTCCGCCGTTTGGTGCTCAGGGACAAGGAGCAGTGGAG
TTACTTTGGTCGTGTCGCTGCTGCCCGCCTCTTCGGAAGCTCGAGCGAGG
CACGCTGCCGCCAGACCGAGCTCGAAGCAGATGCGACCATCGAAGTTGGA
TGGCAAGCAAACGGCGTTGACCTGTAGAGTTGATACCAACGGGAGCGCCC
CCGACACTTCTTGAAGAAGTCGCGGGTTCCGTTGCGCTGATTTTTCGGCC
GAGAAAAAGAGCGCCGCGATACGACGATCAGTCGCTCGGGGTATCGCGCA
CGTTTTTTCCCCATGCAAACCCAACTTGGAGTTCATACACCCATCCACCA
GGGCTTTTCGCCGCAGCGTGCCACCACGTGGGTACAAACTACAACGCTAG
CGTTACCAACAGCAGTGGAAGCAATATCAACATCAGTCAGGGTAACGCCA
TCTCTACCACGACAAATGACGCCACCGCCCCCACCACCACCTTGCTATCC
ACGGCCCCCCTTTCCTTGTTCCTTGCCCAGCCACGAGCGGACAAAGTTCA
AACCGTGCTGAACCGTGTCGGCAAGATCTGAATCCGGACCACTAGCCCAT
GCGCATAATAGCTCTTGGACTGCGCAGAAACACTTCCCGTGCGTTCGTGT
CTCGTCGACCTGATGCCATCCCCCCCCGATGCACCACGTCTCACTCGCGA
CCTCCTCAACTTTCTCACTTCACTGAGGGCGCTTTTCTGTCTCTGTCCAC
CTACCATACCCTGGCCCTCATCCCGTCCTTCCCTCTCAGCGTCGCACGGA
GGCATTTTCAGCAGTCCCCGTCGGCGCTCAGGCGTATTTCAACAGCCAGG
CAGGGGTGGGGACGCTGGCTGTGATCCCCGGCGGGATATCTACCGCCTCC
T
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13121:609..2459+

>mRNA_H-canaliculatus_F_contig13121.2580.1 ID=mRNA_H-canaliculatus_F_contig13121.2580.1|Name=mRNA_H-canaliculatus_F_contig13121.2580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1242bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13121:609..2459+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTCGACGGGCGGCTCGGGAGGAAAGGCCAAGGCCAAGACAGCGACCCC
GAGAGGCCGAGGGAAAGCCGCGAAGTCCGCGCCGTCAACCACGGCCACGG
CCACGGCGACGCCGAGCCCCAAGGCCAGCAACCCCAAGGGCAAGGGCAAA
AAGAGGGGGGTCCCGCAGCAGAAGCAGCGGCAGCAGCAACCCTCGGCCGC
TCCCGGGGCCAAGAAGAAAAGGAAGGAGAAAAATGAAGGGTCGAAGTTGC
TGTCGAAGAGATGTTCGACGAAGGCCACCAAGGGGGACGCGGGAGGAGGC
AGGAAGAAGAGGGCCAAGGCCGCCAGGGAGAGGAGGGAAGCGCTGGAGGC
GATGTGGTCGTCCGGAGAGGAGGGCGGGGACGGGGGAGGCTTTACCGACT
CCAGCGACGACGAGGCGTCGACGGGCGGCTCGGGAGGAAAGGCCAAGGCC
AAGACAGCGACCCCGAGAGGCCGAGGGAAAGCCGCGAAGTCCGCGCCGTC
AACCACGGCCACGGCCACGGCGACGCCGAGCCCCAAGGCCAGCAACCCCA
AGGGCAAGGGCAAAAAGAGGGGGGTCCCGCAGCAGAAGCAGCGGCAGCAG
CAACCCTCGGCCGCTCCCGGGGCCAAGAAGAAAAGGAAGGAGAAAAATGA
AGGGTCGAAGTTGCTGTCGAAGAGATGTTCGACGAAGGCCACCAAGGGGG
ACGCGGGAGGAGGCAGGAAGAAGAGGGCCAAGGCCGCCAGGGAGAGGAGG
GAAGCGCTGGAGGCGATGTGGTCGTCCGGAGAGGAGGGCGGGGACGGGGG
AGGCTTTACCGACTCCAGCGACGACGAGGACGACGATCTCAGCGTCGACA
GCGGTGACAGCGGCGACGATGGGCCGGGCGGCGGGTACAACGGCGGCAAC
GGCAACCGCAACCGCCTCAAGAAGGACGACGATCTCAGCGTCGACAGCGG
TGACAGCGGCGACGATGGGCCGGGCGGCGGGTACAACGGCGGCAACGGCA
ACCGCAACCGCCTCAAGAAGCGTCGCACGGAGGCATTTTCAGCAGTCCCC
GTCGGCGCTCAGGCGTATTTCAACAGCCAGGCAGGGGTGGGGACGCTGGC
TGTGATCCCCGGCGGGATATCTACCGCCTCCCGTCGCACGGAGGCATTTT
CAGCAGTCCCCGTCGGCGCTCAGGCGTATTTCAACAGCCAGGCAGGGGTG
GGGACGCTGGCTGTGATCCCCGGCGGGATATCTACCGCCTCC
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