mRNA_H-canaliculatus_F_contig1311.2568.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1311.2568.1 vs. uniprot
Match: D8LPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM5_ECTSI) HSP 1 Score: 493 bits (1268), Expect = 1.780e-152 Identity = 390/943 (41.36%), Postives = 447/943 (47.40%), Query Frame = 3
Query: 366 QVMRDKLWVEDVMWALRVRKTRREIDKWEVNEHREKWISILEAATPENPTVFATSPDHRIAPPLSYMELLQ-DSASVRSSSSSPLTVGWALSAASGGSNTSVSTSLRGSRSDLCDSSSVQRRNGPRGAGGRFGGCSGKGDGRSRGGEGS---------------------ARPTARRPTTTGKMWKPLESRLPTSLLLASRPVSAEAAARGI----VGDLTASTDEGIATLVEGSVWEGEGGVGDSTVWCFPSRGGGGDNXXXXXXXXXXATGTGDSERNDAVRWPIGTAQQRALFGRKPSPAMVARSTCYAPRRRPPCSADGCSRRPNTGDDDDTAGLFEMELDINSFSFTPAASSDNFSSTVTPQQHRPGDGRGLTRAWGSVA-SALTFDECRDLSHVNGSAVAEDAATAPAEEAREAXXXXXXXXXXXXEPAASGEQPQAPLEDKHTLARGNTLDNFVECCGXXXXXDKVPDDKNVVPETLVTNADGVPASSDSTVAAATHGVDQPTGLPPRPSTACRLSGSSGETTNPRSPGSASSAAIDXXXXXXXXXLEPTTAAACAEQPTRNVSGIEAAAPTRETAHGNGGGRAAAAELACRGEGRTQSHLGGGRGEQGDGERECAAARWREALAPTSRRPVTRRSLV-CGGAAG-GGTKNTGCIRGPREEEAARDSEPHEHGECRWSVDGRMYGGEGNGGEQRRSATAAPICGFSTESEHQGLRNFLSRRSSIAELEVLASTRVEGWEAALARTRSGAPFSHFIGRGTIRENYDESLRDKARGTLALDLRGYGTNLVAPETXXXXXXXXXXXXXXXXXPSSLLDHPVVLPPCQERCATAGAAGTEKTAR-TRTITRAWSSSRVEGG------------------KENGGATRPSKPPPFRAKRGPTVQEARAAVVTNQAGMWGKCAQAQFGRFEEKPYVHSFRPH 3050
+VMRD LWVEDVMWALRVRKTRRE DKWE+NE+R++W+SILEAATP N TVFA PDHRIAPPLS+ ELLQ DS+S+ S LSA GGS+ SVS S S RN G+ G +G R GG + + RP +TGKMW PLESRLPTSLLL SRP SA AA G DL G+ W GEGG D TVW F S GG + A G G E V TAQ+RALFGRKPSPA VARST YAPRRRPPCS DG RP G DDTA L+EME DIN+ SF A ++D S T + GDGR RAWGSVA SALTFD+ LSH N A +AD +SD A+A+ G RL +SG T G+ ++A + PT +C E + GGGR G AA W EAL PTSRRPVTRRSL GG AG G + TG GP EE+ HE C W+ DG + GGEG G +RR++ AAP CGFSTES+ + L +FL RRSS+ + E LAS RV WEA LAR +SG F H IGRGTIRENYD+SLRDKA TLALDLRGYGT+L+APET P ERCA+A AG T TR + RAWSS+R+ G G SKPPPF RG TVQEAR VT+QAGMWGKC+Q FGRFEEKPYVHSF H
Sbjct: 90 RVMRDTLWVEDVMWALRVRKTRREFDKWEINEYRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPS----------VLSANPGGSSASVSNGXXXXTGSHLTSQSRGGRNDRSGSTG-----TGNSSERRIGGAXXXXXXXXXXXXXXXXXXXXXXXSMGSVTRPVSTGKMWTPLESRLPTSLLLTSRPGSAAAAVGGTGXXXXXDLAXXXXXXXXXXXXGNEWGGEGGAEDPTVWNFSSWTNGGGSGG--------ANGHGSCEEGHVV-----TAQERALFGRKPSPATVARSTSYAPRRRPPCSTDGRRHRPEVGSGDDTAELYEMERDINTSSFALADATD-LSITAASHKRGRGDGRSAVRAWGSVATSALTFDDAAGLSHANAEA----------------------------------------------------------------------------------SADSATETSDRIDASASGGG--------------RLRRASGTVTA----GATAAAGVKRIGV-------PTFELSCPED--------------NDDQDDTGGGRQGXXXXXXXXXXXXXXXXAG-----------SAAEWWCEALGPTSRRPVTRRSLDHSGGVAGRGAPQGTGGTWGPWEEDPGGGCGQHERSGCGWTSDGTVQGGEGYRGGRRRASAAAPNCGFSTESKQRNLEDFLKRRSSMDKSEGLASERVRVWEAGLARAQSGTRFRHQIGRGTIRENYDQSLRDKACETLALDLRGYGTHLLAPETATTI--------------------PTAGGGASERCASASGAGVAATGTPTRAMKRAWSSTRIGGXXXXXXXXXXXGGVRLLLPSPTGAGADCSKPPPFGPVRGTTVQEARITAVTHQAGMWGKCSQGHFGRFEEKPYVHSFSQH 851
BLAST of mRNA_H-canaliculatus_F_contig1311.2568.1 vs. uniprot
Match: A0A6H5JI14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI14_9PHAE) HSP 1 Score: 359 bits (922), Expect = 1.930e-101 Identity = 375/1103 (34.00%), Postives = 440/1103 (39.89%), Query Frame = 3
Query: 366 QVMRDKLWVEDVMWALRVRKTRREIDKWEVNEHREKWISILEAATPENPTVFATSPDHRIAPPLSYMELLQ-DSASVRSSSSSPLTVGWALSAASGGSNTSVSTSLRGSRSDLCDSSSVQRRNGPRGAGGRFGGCSGKGDGRSRGGEG-----------------SARPTARRPTTTGKMWKPLESRLPTSLLLASRPVSAEAAA----RGIVGDLTASTDEGIATLVEGSVWEGEGGVGDSTVWCFPSRGGGGDNXXXXXXXXXXATGTGDSERNDAVRWPIGTAQQRALFGRKPSPAMVARSTCYAPR------------------------------------------------------------------RRPPCSADGCSRRPNTGDDDDTAGLFEMELDINSFSFTPAASSD-----------------------NFSSTVTPQQHRPGDGRGLTRAWGSVASALTFDECRDLSHV---------------------------------------------------------NGSAVAEDAATAPAEEAREAXXXXXXXXXXXXEPAASGEQPQAPLEDKHTLARGNTLDNFVECCGXXXXXDK--------VPDDKNVVPETLV--TNADGV-PASSDSTVAAATHGVDQPTGLPPRPSTACRLSGSSGETTNPRSPGSASSAAIDXXXXXXXXXLEPT-----TAAACAEQPTRNVSGIEAAAPTRETAHGNGGGRAAAAELACRGEGRTQSHLGGGRGEQGDGERECA--------------AARWR-EALAPTSRRPVTRRSLVCGG--AAGGGTKNTGCIRGPREEEAARDSEPHEHGECRWSVDGRMYGGEGNGGEQRRSATAAPICGFSTESEHQGLRNFLSRR---------------SSIAELEVLASTRVEGWEAALARTRSGAPFSHFIGRGTIRENYDESLRDKARGTLALDLRGYGTNLVAPETXXXXXXXXXXXXXXXXXPSSLLDHPVVLPPCQERCATAGAAGTEKTAR-TRTITRAWSSSRVEGGKE------------------NGGATRPSKPPPFRAKRGPTVQEARAAVVTNQ 2969
+VMRD LWVEDVMWALRVRKTRRE DKWE NEHR++W+SILEAATP N TVFA PDHRIAPPLS+ ELLQ DS+S+ S LSA GGS+ S Q R G +G G G C + + RP +TGKMW PLESRLPTSLLL SRP SAEA G GDL +T + G+ W GEGG D TVW F S GG + A G G + TAQ+RALFGRKPSPA VARST YAPR RRPPCSADG RP G DDTA L+EME DIN SF AA++D + S+T + GDGR + G ED A EP+ G Q +A TL + + + + CG D + PETL+ NA G+ P S + + D LPPR TA S + ++ R+ +A++A P A+A P R SG T G EL+ + GG G GER AA WR EAL PTSRRPVTRRSL GG A G + TGC GP EE A HE C W+ DG M GGEG G +RR++T A ICG STES+ + L +FL RR SSI + E LAS RV WEA LA +S F H IGR TIRENYD+SLRDKA TLALDLRGYGT+L+APET P ERC+ A AG T T+ + RAWSS+R+ GG G SKPPPF RG TVQEAR VT+Q
Sbjct: 72 RVMRDTLWVEDVMWALRVRKTRREFDKWEFNEHRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPS----------VLSANPGGSSAXXXXXXXXXXXSHLTS---QSRGGKKGRSGNTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESMGSVTRPVSTGKMWVPLESRLPTSLLLTSRPGSAEAGVGETGAGACGDLATTTGGTPTVVTGGNEWGGEGGAEDPTVWNFSSWTNGGGSGG--------ANGHGSCGEGH-----VATAQERALFGRKPSPATVARSTSYAPRLRRERVWGGQFVSVWRMECTIDRKRAGCEGESAVGRRKPTPEPDAEPARTPVVCSYFPDTNNTDGRRRPPCSADGRRHRPEVGSGDDTAELYEMERDINISSFALAAATDMNLLKKELLMMNHAVRFSCARATDLSTTAASHKRGRGDGRSAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGEGEDLAE---------------------EPSPMGAQEEA----GKTLGKSDAPKSNL--CGGDGSGDASCHGGGGTAESNGGEDPETLLLGANAGGIQPPVSGTAARPPSRDGDHLEVLPPRSWTAPPPSSNGRNISHTRTSAAAAAAITTPGSAEASADSAPEISDRINASASGAGPLRRASGTVTVGATAAAGVKRIG--VPTFELSRPEDNDAPDDTAGG----GQGERXXXXXXXXXXXXXXXGNAAEWRREALGPTSRRPVTRRSLDHGGGVAGRGVPQGTGCTWGPWEEGAGGGCGLHERSRCGWTSDGTMQGGEGCRGGRRRASTGASICGVSTESKQRNLEDFLKRRCDARPESREGRSWTRSSINKSEGLASERVRVWEAGLACAQSRTRFRHQIGRATIRENYDQSLRDKACETLALDLRGYGTHLLAPETATTI--------------------PTASAGASERCSGASGAGVAATGTPTKAMERAWSSTRIGGGNAXXXXXXXXGGVGLLLPWPTGAGADCSKPPPFGPVRGTTVQEARITAVTHQ 1095 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1311.2568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1311.2568.1 >prot_H-canaliculatus_F_contig1311.2568.1 ID=prot_H-canaliculatus_F_contig1311.2568.1|Name=mRNA_H-canaliculatus_F_contig1311.2568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=920bp MRDKLWVEDVMWALRVRKTRREIDKWEVNEHREKWISILEAATPENPTVFback to top mRNA from alignment at H-canaliculatus_F_contig1311:162..8269+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1311.2568.1 ID=mRNA_H-canaliculatus_F_contig1311.2568.1|Name=mRNA_H-canaliculatus_F_contig1311.2568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8108bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1311:162..8269+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1311:162..8269+ >mRNA_H-canaliculatus_F_contig1311.2568.1 ID=mRNA_H-canaliculatus_F_contig1311.2568.1|Name=mRNA_H-canaliculatus_F_contig1311.2568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5520bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1311:162..8269+ (Hapterophycus canaliculatus Oshoro5f female)back to top |