mRNA_H-canaliculatus_F_contig13105.2566.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13105.2566.1 vs. uniprot
Match: D7G721_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.440e-38 Identity = 171/368 (46.47%), Postives = 203/368 (55.16%), Query Frame = 1
Query: 1 REGTQQLIEAGAACVAARSLLSSAARCLLPWVPSPRPPPPSKVNESADAADDH------------------RHGEGAAAPGERLEAERTTDAGGQESS---AAALLSDLVWRYLELGARGRVCVSALRLAARGMAGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEEGLRLELIPLECLCRLVNTAVEGRVAATTASATVIXXXXXXXXXXXXXXXXXASSPRTGGVTRGGLGSGSQAGGEHGARSSRK-----------GPATMGTAMDSTATPSVVLVAYVELLRTLVSRLESGGDSFPAAAATAAPAAGLAAPGGSGEDACAVGTGAGTRTLDLETLFRAIINCSEALPIVRKAQASN 1008
RE TQQL+EAGAACVAARSLLSSAA+ L + SP P A A ++ R + A + + D E+S +++LLSDLVWRY ELGARGRVCV+ALR AR +AG+GXXXXXXXXXXXXXXXXXXXXXXXXXX RLE GL LEL+PLECLCRLVN VE V AT+ +A A+SP T RG + S + G + ++ + MG+ MD TPSVVLVAYVELLRTLV+RLESGG A G A G G R LDLETLFR + CS+ALPI+RKAQA++
Sbjct: 43 RESTQQLVEAGAACVAARSLLSSAAKYLRAHL-SPTGGSPLLPETFAKATSNNPRSGXXXXXXXXXNVYGSRGARRSHADADSSDTGGVVDLNAGEASGPGSSSLLSDLVWRYPELGARGRVCVAALRRTARQVAGSGXXXXXXXXXXXXXXXXXXXXXXXXXXRAA--TRLEGGLSLELMPLECLCRLVNADVENYVIATSTAAM-------------------ATSPTTASSPRGEEETSSTSNGRYVEKNDGRCRSAEDTAMATSTTAMGSLMDGVKTPSVVLVAYVELLRTLVTRLESGG----------AREGGAALXXXXXXXXGPAGVALGVRALDLETLFRGTVKCSKALPILRKAQATS 378
BLAST of mRNA_H-canaliculatus_F_contig13105.2566.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI) HSP 1 Score: 127 bits (319), Expect = 9.820e-27 Identity = 136/354 (38.42%), Postives = 162/354 (45.76%), Query Frame = 1
Query: 1 REGTQQLIEAGAACVAARSLLSSAARCLL----PWVPSPRPPPPSKVNESADAADDHRHGEGAAAPGERLEAERTTDAGGQESS--------------AAALLSDLVWRYLELGARGRVCVSALRLAARGMAGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEEGLRLELIPLECLCRLVNTAVEGRVAATTASATVIXXXXXXXXXXXXXXXXXASSPRTGGVTRGGLGSGSQAGGEHGARSSRKGPATMGTAMDSTATPSVVLVAYVELLRTLVSRLESGGDSFPAAAATAAPAAGLAAPGGSGEDACAVGTGAGTRTLDLETLFRAIINCSEALPIVRKAQASN 1008
+EGTQQL+EAGAACVAARSLLSSAA+ LL P SP P S + G G R DA +++ +++LLSDLVWRYLELGARGRVCV+ALR AR +AG+GXXXXXXXXXXX RLEEGL L G +T++ + ++P T MG+ MD TPSVVLVAYVELLRTLV+RLESGG A G G G R LDLETLFR + CS+ALPI+RKAQA++
Sbjct: 900 KEGTQQLVEAGAACVAARSLLSSAAKYLLANLSPTEGSPLLPETFAKATSNNQRSGXXXXXGGNDYGSRGARRSHADADSRDTGGVVDLNAGEASGPGSSSLLSDLVWRYLELGARGRVCVAALRRTARQLAGSGXXXXXXXXXXXVRGSAASTEGEGEEERAA--TRLEEGLSLG----------------GEETWSTSNGRYVEKNDGRCRSAEDTAM---TTPTT----------------------------AMGSLMDGVKTPSVVLVAYVELLRTLVTRLESGG-----------------ARGXXXXXXXPAGVVLGVRALDLETLFRGTVKCSKALPILRKAQATS 1187
BLAST of mRNA_H-canaliculatus_F_contig13105.2566.1 vs. uniprot
Match: A0A6H5J6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.640e-21 Identity = 140/359 (39.00%), Postives = 175/359 (48.75%), Query Frame = 1
Query: 1 REGTQQLIEAGAACVAARSLLSSAARCLLPWVPSPRPPPPSKVNESADAADDH-RHGEGA-----AAPGERLEAER-TTDAGGQ------ESS---AAALLSDLVWRYLELGARGRVCVSALRLAARGMAGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARLEEGLRLELIPLECLCRLVNTAVEGRVAATTASATVIXXXXXXXXXXXXXXXXXASSPRTGGVTRGGLGSGSQAGGEHGARSSRKGPATMGTAMDSTATPSVVLVAYVELLRTLVSRLESGG------DSFPAAAATAAPAAGLAAPGGSGEDACAVGTGAGTRTLDLETLFRAIINCSEALPIVRKAQASN 1008
+EGTQQL+EAGAACVAARSLLSSAA+ LL + +P P A A +++ R G G + R A+ ++D GG E+S +++LLSDLVWRYLELGARGRVCV+ALR AR +AG+GXXXXXXXXXX XXXXXXX RLEEGL L + E +TT+ + +++ TMG M+ TPS+VL+AYVELLRTLV+RLESGG A G A G G R LD+ETLFR + LPI+RKAQA++
Sbjct: 478 KEGTQQLVEAGAACVAARSLLSSAAKYLLAHL-APTGGSPLLPERFAKATNNNIRSGGGGGNDYGSRGARRCHADADSSDTGGVVDLDAGETSGPGSSSLLSDLVWRYLELGARGRVCVAALRRTARQVAGSGXXXXXXXXXXSAGVRGSAASTEGEXXXXXXXXTRLEEGLSLAAMATSPTTXXXXXGEEA--TSTTSDGRYVKKKDGGCRSAENRAMATSTT-------------------------------TMGNLMNGVKTPSIVLMAYVELLRTLVTRLESGGARGXXXXXXXXXXXXXXXAEGPA------------GVAPGVRALDVETLFR------KTLPILRKAQAAS 784 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13105.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13105.2566.1 >prot_H-canaliculatus_F_contig13105.2566.1 ID=prot_H-canaliculatus_F_contig13105.2566.1|Name=mRNA_H-canaliculatus_F_contig13105.2566.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=602bp REGTQQLIEAGAACVAARSLLSSAARCLLPWVPSPRPPPPSKVNESADAAback to top mRNA from alignment at H-canaliculatus_F_contig13105:2..3215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13105.2566.1 ID=mRNA_H-canaliculatus_F_contig13105.2566.1|Name=mRNA_H-canaliculatus_F_contig13105.2566.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3214bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13105:2..3215- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13105:2..3215- >mRNA_H-canaliculatus_F_contig13105.2566.1 ID=mRNA_H-canaliculatus_F_contig13105.2566.1|Name=mRNA_H-canaliculatus_F_contig13105.2566.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13105:2..3215- (Hapterophycus canaliculatus Oshoro5f female)back to top |