mRNA_H-canaliculatus_F_contig131.2561.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE) HSP 1 Score: 606 bits (1563), Expect = 7.950e-201 Identity = 295/372 (79.30%), Postives = 321/372 (86.29%), Query Frame = 2
Query: 536 KKSLQERLNDMRFDFSLDGREPYVAGAPPRIPEGLEAPSSGGPP---ATAVVVAGGSPRAKGGRQALYSNYRRRRRPLNALCMPKNQRPQGCAALLPPMGTAARRVTVVDHVAPELHRISDLSEFKSDLPCVTSGTCPVPSFRCSKGHVWESNGSPVCFYCPVCADTRITTRRKRKRDLEAMQEIARGKGGECIAEEYLGIDEKISFRCGDGHEWLTSPANLVYKNTWCPKCAALRSTERKKLTITDMHQTARQFGGVFLSTEYHGAAVKHEWRCKRGHTFWNTPNNVRRSEGGRRVATFCKICTMMDRNILRAAVLGGLSKEDAKGKLRELTAAGAMPARRHFLKKRATGKSTLAAKRRTMIRKRSIKISG 1642
KKSLQ+RL++MR DFSL+ REPYVAGAPPRIP E+P G P A A + G+ AK GRQALYSNYRRRRRPLNA CMPKNQRPQGC LLPP+GT ++V VVDHVAPEL +I LSE+KSDLPCV +GTCPVP FRCSKGHVWE NG+PVCFYCP+CADTRITTR KRKRDLEAMQEIARGKGGECIAEEYLG+DEKI+FRCGDGHEWLTSP+NLVYKNTWCPKCAALRS ERKKLT+ DMHQTARQFGGVFLS EY GAAVKHEWRCKRGHTFWNTPNNVRR+EGGRRVATFCKICT MDR IL+AAVLGGL K+DAK L +L A GAMP RRHFLKKRATGKSTLAA+RR MIR + +SG
Sbjct: 121 KKSLQQRLDEMRLDFSLEDREPYVAGAPPRIPPLPESPPGGTPSQAAAAAALAGSGTMPAKSGRQALYSNYRRRRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKRATGKSTLAAQRRKMIRMNNRSLSG 492
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI) HSP 1 Score: 552 bits (1423), Expect = 7.750e-183 Identity = 265/329 (80.55%), Postives = 285/329 (86.63%), Query Frame = 2
Query: 704 AKGGRQALYSNYRRRRRPLNALCMPKNQRPQGCAALLPPMGTAARRVTVVDHVAPELHRISDLSEFKSDLPCVTSGTCPVPSFRCSKGHVWESNGSPVCFYCPVCADTRITTRRKRKRDLEAMQEIARGKGGECIAEEYLGIDEKISFRCGDGHEWLTSPANLVYKNTWCPKCAALRSTERKKLTITDMHQTARQFGGVFLSTEYHGAAVKHEWRCKRGHTFWNTPNNVRRSEGGRRVATFCKICTMMDRNILRAAVLGGLSKEDAKGKLRELTAAGAMPARRHFLKKRATGKSTLAAKRRTMIRKRSIKISGGGSSNDGETAR*QEFP 1690
AK GRQALYSNYRRRRRPLNA CMPKNQRPQGC LLPP+GT ++V VVDHVAPEL +I LSE+KSDLPCV +GTCPVP FRCSKGHVWE NG+PVCFYCP+CADTRITTR KRKRDLEAMQEIARGKGGECIAEEYLGIDEKI+FRCGDGHEWLTSP+NLVYKNTWCPKCAALRS ERKKLT+ DMHQTARQFGGVFLS EY GAAVKHEWRCKRGHTFWNTPNNVRR+EGGRRVATFCKICT MDR IL+AAVLGGL K+DAK L +L A GAMP RRHFLKKRATGKSTLAA+RR MIR + SG ++ + E P
Sbjct: 3 AKSGRQALYSNYRRRRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGIDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPIRRHFLKKRATGKSTLAAQRRKMIRMNNRSSSGSPANTTSNISSSGEAP 331
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: A0A836C7R5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R5_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.420e-54 Identity = 101/235 (42.98%), Postives = 128/235 (54.47%), Query Frame = 2
Query: 761 NALCMPKNQRPQGCAALLPPMGTAARRVTVVDHVAPELHRISDLSEFKSDLPCVTSGTCPVPSFRCSKGHVWES-NGSPVCFYCPVCADTRITTRRKRKR-DLEAMQEIARGKGGECIAEEYLGIDEKISFRCGDGHEWLTSPANLVYKNTWCPKCAALRSTERKKLTITDMHQTARQFGGVFLSTEYHGAAVKHEWRCKRGHTFWNTPNNVRRSEGGRRVATFCKICTMMDRNI 1459
+ALC P RP GCA LL H P +D + LPCV SG CP F C +GH W++ G+P CF+CP C+ + RR R+R L ++ E+A +GGEC++ EY G+ E F+C GH W N+VY +WCP CA + +L+ DMH TA QFGG FLS YHGA KH WRC GHTF TPN +RR GG+R FC C+ R I
Sbjct: 71 SALCRPTGTRPLGCAPLL-------------QHHFPPPRTCTD-DAMMTPLPCVESGVCPFVRFECPRGHTWKAVAGAPACFFCPQCSAAEVRGRRARRRLSLASLAELAAARGGECVSAEYRGLMEPHDFKCAKGHVWSALANNVVYCASWCPTCAKGQRAASNRLSAADMHATAAQFGGEFLSPTYHGADKKHLWRCSAGHTFKQTPNAIRRRVGGKRRPAFCPECSRAQRAI 291
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: UPI0007856E0F (hypothetical protein n=1 Tax=Polynucleobacter sinensis TaxID=1743157 RepID=UPI0007856E0F) HSP 1 Score: 126 bits (316), Expect = 3.030e-29 Identity = 58/149 (38.93%), Postives = 90/149 (60.40%), Query Frame = 2
Query: 950 FRCSKGHVWES--NGSPVCFYCPVCADTRITTRRKRKRDLEAMQEIARGKGGECIAEEYLGIDEKISFRCGDGHEWLTSPANLVYKNTWCPKCAALRSTERKKLTITDMHQTARQFGGVFLSTEYHGAAVKHEWRCKRGHTFWNTPNNV 1390
+ CS+ H W + N +CP+CA++ K+ +E Q IA+ +GG C+++EYLGI +K+ +RCG+GHEW ++P + N WCPKC ++ + + +I DM A + GGV LS EY A K +WRCK GH + +TP+ +
Sbjct: 26 WTCSERHEWSALPNTIKKGHWCPICANSGTAA----KKSIEEFQAIAKERGGVCLSDEYLGIFKKLKWRCGEGHEWESTPKTIQAGN-WCPKCGRIKVGNQLRKSIDDMQVLAYRNGGVCLSNEYLNACTKLKWRCKEGHVWESTPDTI 169
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: D7FQ23_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ23_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.500e-25 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1
Query: 3411 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAATS 3575
DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAATS
Sbjct: 176 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAATS 230
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: A0A1T1HII4_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas sp. MF4836 TaxID=1960827 RepID=A0A1T1HII4_9PSED) HSP 1 Score: 115 bits (289), Expect = 6.810e-24 Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = 2
Query: 950 FRCSKGHVWESNGSPVC--FYCPVCADTRITTRRKRKRDLEAMQEIARGKGGECIAEEYLGIDEKISFRCGDGHEWLTSPANLVYKNTWCPKCAALRSTERKKLTITDMHQTARQFGGVFLSTEYHGAAVKHEWRCKRGHTFWNTPNNVRRSEGGRRVATFCKICTMMDR 1453
FRC++GH WE+ G V +CP CA R + + LE +++ A +GG+C+AE YLG+ + FRC GHEW T ++ + WC CA ++K+L+I D H +A+ GG LST Y K W C RGH++ N+R +C C MDR
Sbjct: 181 FRCARGHEWEAQGHEVKRRTWCPECARLRKVEGYRHQDGLERLRQKAAERGGQCLAEAYLGVGSRYRFRCAKGHEWETLGRRML-RGGWCLICAY----DKKRLSIEDAHASAKARGGQCLSTSYIRVIDKLHWLCHRGHSWHAQYANIRAGH-------WCPECASMDR 338
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: A0A8K0P381_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P381_LADFU) HSP 1 Score: 102 bits (254), Expect = 1.280e-20 Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = -1
Query: 3411 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAATS 3575
DPLEATTGLVPL GIDVWEHAYYLQYKNVRPDYVK+IFKV NW DV+ERL A S
Sbjct: 168 DPLEATTGLVPLFGIDVWEHAYYLQYKNVRPDYVKNIFKVANWKDVEERLKKAQS 222
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: UPI00096B0FD5 (superoxide dismutase [Mn] 1, mitochondrial-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B0FD5) HSP 1 Score: 101 bits (251), Expect = 2.570e-20 Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = -1
Query: 3417 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAA 3575
DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVK+IF ++NW DV ERL A
Sbjct: 160 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIINWKDVSERLAKA 212
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: V9TIM7_CALHG (Superoxide dismutase (Fragment) n=1 Tax=Calanus helgolandicus TaxID=114068 RepID=V9TIM7_CALHG) HSP 1 Score: 96.3 bits (238), Expect = 4.720e-20 Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = -1
Query: 3417 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAA 3575
DPLEATTGLVPL GIDVWEHAYYLQYKNVRPDYVK+I+++ NW DV RL AA
Sbjct: 36 DPLEATTGLVPLFGIDVWEHAYYLQYKNVRPDYVKAIYEIANWNDVGARLDAA 88
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Match: A0A7R8Z9Z1_TIMDO (Superoxide dismutase n=1 Tax=Timema douglasi TaxID=61478 RepID=A0A7R8Z9Z1_TIMDO) HSP 1 Score: 98.2 bits (243), Expect = 5.950e-20 Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = -1
Query: 3417 DPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAA 3575
DPLEATTGL+P+LGIDVWEHAYYLQYKNVRPDY+K+IF V+NW DV ER A
Sbjct: 97 DPLEATTGLIPVLGIDVWEHAYYLQYKNVRPDYIKAIFDVINWKDVSERFAKA 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig131.2561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig131.2561.1 >prot_H-canaliculatus_F_contig131.2561.1 ID=prot_H-canaliculatus_F_contig131.2561.1|Name=mRNA_H-canaliculatus_F_contig131.2561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=507bp MLLLASAAVILVGTCRARAAPPSSATSGVSPLQLAFVPSLAGGNRRFRWCback to top mRNA from alignment at H-canaliculatus_F_contig131:51639..59610+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig131.2561.1 ID=mRNA_H-canaliculatus_F_contig131.2561.1|Name=mRNA_H-canaliculatus_F_contig131.2561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:51639..59610+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig131:51639..59610+ >mRNA_H-canaliculatus_F_contig131.2561.1 ID=mRNA_H-canaliculatus_F_contig131.2561.1|Name=mRNA_H-canaliculatus_F_contig131.2561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3042bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:51639..59610+ (Hapterophycus canaliculatus Oshoro5f female)back to top |