mRNA_H-canaliculatus_F_contig13090.2550.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13090.2550.1
Unique NamemRNA_H-canaliculatus_F_contig13090.2550.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13090.2550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13090contigH-canaliculatus_F_contig13090:145..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929044.5692472-UTR-H-canaliculatus_F_contig13090:144..2321622929044.5692472-UTR-H-canaliculatus_F_contig13090:144..232Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13090 145..232 +
1696845658.700161-UTR-H-canaliculatus_F_contig13090:144..2321696845658.700161-UTR-H-canaliculatus_F_contig13090:144..232Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13090 145..232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929044.5796862-CDS-H-canaliculatus_F_contig13090:232..6221622929044.5796862-CDS-H-canaliculatus_F_contig13090:232..622Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13090 233..622 +
1696845658.711568-CDS-H-canaliculatus_F_contig13090:232..6221696845658.711568-CDS-H-canaliculatus_F_contig13090:232..622Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13090 233..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13090.2550.1prot_H-canaliculatus_F_contig13090.2550.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13090 233..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13090.2550.1

>prot_H-canaliculatus_F_contig13090.2550.1 ID=prot_H-canaliculatus_F_contig13090.2550.1|Name=mRNA_H-canaliculatus_F_contig13090.2550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
MDNPNKNNTCCRRDGCPGKRPAACHVLVLPLHKYCRYNSTFVRSSTSGTV
VYDSTLFLLLYTVPYTIGIGPVFQIRIRSILKKQSVFLRIFPQTRKAKNT
THLQSSSKSDQNTFSRSSAIHYHYALVGQV
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mRNA from alignment at H-canaliculatus_F_contig13090:145..622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13090.2550.1 ID=mRNA_H-canaliculatus_F_contig13090.2550.1|Name=mRNA_H-canaliculatus_F_contig13090.2550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=478bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13090:145..622+ (Hapterophycus canaliculatus Oshoro5f female)
GTACATCATTTCTACGAGAAGCCCTCTCTATCCCCCCAAGCCCGCACGAT
TGTTGAGTTCACTGCCCTTCATGAAGGCATCCATCTGAATGGATAATCCC
AACAAAAACAACACATGTTGTAGGCGTGACGGCTGCCCTGGCAAACGACC
GGCTGCATGCCATGTACTTGTACTGCCGCTACATAAGTACTGCCGCTACA
ACAGTACCTTTGTAAGGAGCTCCACGTCCGGTACTGTGGTATATGACAGT
ACTCTTTTTTTATTACTGTATACTGTACCATATACCATAGGTATAGGTCC
GGTATTTCAAATCCGCATCCGATCGATTTTGAAAAAACAGTCAGTGTTTC
TACGGATTTTCCCGCAAACAAGAAAGGCAAAGAACACAACTCACCTGCAG
TCATCTTCAAAAAGCGACCAAAACACGTTTTCACGTTCCTCCGCCATTCA
TTACCATTACGCGCTCGTGGGTCAAGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13090:145..622+

>mRNA_H-canaliculatus_F_contig13090.2550.1 ID=mRNA_H-canaliculatus_F_contig13090.2550.1|Name=mRNA_H-canaliculatus_F_contig13090.2550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13090:145..622+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATAATCCCAACAAAAACAACACATGTTGTAGGCGTGACGGCTGCCC
TGGCAAACGACCGGCTGCATGCCATGTACTTGTACTGCCGCTACATAAGT
ACTGCCGCTACAACAGTACCTTTGTAAGGAGCTCCACGTCCGGTACTGTG
GTATATGACAGTACTCTTTTTTTATTACTGTATACTGTACCATATACCAT
AGGTATAGGTCCGGTATTTCAAATCCGCATCCGATCGATTTTGAAAAAAC
AGTCAGTGTTTCTACGGATTTTCCCGCAAACAAGAAAGGCAAAGAACACA
ACTCACCTGCAGTCATCTTCAAAAAGCGACCAAAACACGTTTTCACGTTC
CTCCGCCATTCATTACCATTACGCGCTCGTGGGTCAAGTTATGGATAATC
CCAACAAAAACAACACATGTTGTAGGCGTGACGGCTGCCCTGGCAAACGA
CCGGCTGCATGCCATGTACTTGTACTGCCGCTACATAAGTACTGCCGCTA
CAACAGTACCTTTGTAAGGAGCTCCACGTCCGGTACTGTGGTATATGACA
GTACTCTTTTTTTATTACTGTATACTGTACCATATACCATAGGTATAGGT
CCGGTATTTCAAATCCGCATCCGATCGATTTTGAAAAAACAGTCAGTGTT
TCTACGGATTTTCCCGCAAACAAGAAAGGCAAAGAACACAACTCACCTGC
AGTCATCTTCAAAAAGCGACCAAAACACGTTTTCACGTTCCTCCGCCATT
CATTACCATTACGCGCTCGTGGGTCAAGTT
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