mRNA_H-canaliculatus_F_contig13087.2546.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13087.2546.1
Unique NamemRNA_H-canaliculatus_F_contig13087.2546.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13087.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13087contigH-canaliculatus_F_contig13087:723..1389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size667
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.4298508-CDS-H-canaliculatus_F_contig13087:722..11571622929042.4298508-CDS-H-canaliculatus_F_contig13087:722..1157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13087 723..1157 +
1696845658.3708856-CDS-H-canaliculatus_F_contig13087:722..11571696845658.3708856-CDS-H-canaliculatus_F_contig13087:722..1157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13087 723..1157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.445457-UTR-H-canaliculatus_F_contig13087:1157..13891622929042.445457-UTR-H-canaliculatus_F_contig13087:1157..1389Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13087 1158..1389 +
1696845658.3797677-UTR-H-canaliculatus_F_contig13087:1157..13891696845658.3797677-UTR-H-canaliculatus_F_contig13087:1157..1389Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13087 1158..1389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13087.2546.1prot_H-canaliculatus_F_contig13087.2546.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13087 723..1157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13087.2546.1

>prot_H-canaliculatus_F_contig13087.2546.1 ID=prot_H-canaliculatus_F_contig13087.2546.1|Name=mRNA_H-canaliculatus_F_contig13087.2546.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=145bp
APSSLSSPFRLARRPERRRASRVEGACVGPARTGRTSRSPVCSSPSLGPG
EPVGTLRNPDSSRGPIQRRARNPPEALHGAFADKSVARLFSCVSVRRLPR
RWRSPLCVRGGWNAIRADRPRETPRATGEPLLPFSRRRPSMLSD*
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mRNA from alignment at H-canaliculatus_F_contig13087:723..1389+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13087.2546.1 ID=mRNA_H-canaliculatus_F_contig13087.2546.1|Name=mRNA_H-canaliculatus_F_contig13087.2546.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=667bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13087:723..1389+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCCATCGTCATTATCTTCTCCTTTTCGTCTTGCTCGGAGGCCCGAGAG
GCGACGCGCTTCGAGGGTGGAAGGGGCTTGCGTCGGCCCTGCGCGAACAG
GCCGCACCTCCCGGTCGCCTGTCTGCTCCTCCCCGTCCCTCGGTCCCGGC
GAACCCGTCGGCACTCTGCGGAATCCAGACTCATCGCGAGGGCCCATTCA
ACGCCGGGCACGGAACCCCCCGGAAGCTCTGCACGGAGCTTTCGCAGACA
AGTCTGTAGCACGTTTATTTTCGTGCGTCTCGGTTCGTCGCCTGCCGCGG
CGATGGCGGAGTCCCCTCTGCGTGCGCGGTGGCTGGAACGCGATCCGTGC
CGATCGGCCGAGAGAAACGCCGAGGGCGACCGGCGAGCCGTTGCTCCCGT
TCTCCCGGCGACGACCGAGCATGCTTTCTGACTAGTGCCGTTCTTCGAGG
CGGCTGCAATCCCGCCGCGTCGCTGCCTCGTGGCCTGTTGGCCCACGACG
GGATAGCCCCGCCGCACGGCAGTCGAACCGGCACCCACCGACGTACCTGC
ATTTTTTCCCCGCTCGAATCTTATGAACTCCGATCGCACTGCGCCGCCGC
CGCGTCAGGTGGACGGGATGGTCAAGGCGGAGCACTCGCAGCGCGTCCGC
CGAGTCAGACAGCAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13087:723..1389+

>mRNA_H-canaliculatus_F_contig13087.2546.1 ID=mRNA_H-canaliculatus_F_contig13087.2546.1|Name=mRNA_H-canaliculatus_F_contig13087.2546.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13087:723..1389+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCCATCGTCATTATCTTCTCCTTTTCGTCTTGCTCGGAGGCCCGAGAG
GCGACGCGCTTCGAGGGTGGAAGGGGCTTGCGTCGGCCCTGCGCGAACAG
GCCGCACCTCCCGGTCGCCTGTCTGCTCCTCCCCGTCCCTCGGTCCCGGC
GAACCCGTCGGCACTCTGCGGAATCCAGACTCATCGCGAGGGCCCATTCA
ACGCCGGGCACGGAACCCCCCGGAAGCTCTGCACGGAGCTTTCGCAGACA
AGTCTGTAGCACGTTTATTTTCGTGCGTCTCGGTTCGTCGCCTGCCGCGG
CGATGGCGGAGTCCCCTCTGCGTGCGCGGTGGCTGGAACGCGATCCGTGC
CGATCGGCCGAGAGAAACGCCGAGGGCGACCGGCGAGCCGTTGCTCCCGT
TCTCCCGGCGACGACCGAGCATGCTTTCTGACTAGGCTCCATCGTCATTA
TCTTCTCCTTTTCGTCTTGCTCGGAGGCCCGAGAGGCGACGCGCTTCGAG
GGTGGAAGGGGCTTGCGTCGGCCCTGCGCGAACAGGCCGCACCTCCCGGT
CGCCTGTCTGCTCCTCCCCGTCCCTCGGTCCCGGCGAACCCGTCGGCACT
CTGCGGAATCCAGACTCATCGCGAGGGCCCATTCAACGCCGGGCACGGAA
CCCCCCGGAAGCTCTGCACGGAGCTTTCGCAGACAAGTCTGTAGCACGTT
TATTTTCGTGCGTCTCGGTTCGTCGCCTGCCGCGGCGATGGCGGAGTCCC
CTCTGCGTGCGCGGTGGCTGGAACGCGATCCGTGCCGATCGGCCGAGAGA
AACGCCGAGGGCGACCGGCGAGCCGTTGCTCCCGTTCTCCCGGCGACGAC
CGAGCATGCTTTCTGACTAG
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