mRNA_H-canaliculatus_F_contig13081.2544.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13081.2544.1
Unique NamemRNA_H-canaliculatus_F_contig13081.2544.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.340e-27
Identity = 143/304 (47.04%), Postives = 162/304 (53.29%), Query Frame = 1 
Query:    1 MSQCGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRCIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSQQAPAAGGGGSGNSSGKIPGSSCAQQQGNEGFGGLRSKRCGRHGCTLQATYVSSQGNERAEFCAQHANDGILPAGIISGFGEYGIGGHAAGGAAAGVKRKQPSPPSPYALAMA-----GFSAGATGSAXXXXXXXXXXXSG----------TKRAALPTAPVMQ---------------FQPQVQPHSGRYTSGSGDSLQFRHHPSQRYLAEG 822
            MSQCGH +C+KRPTYGVAGS KREFCSQHA++GM+NVNNKRCI  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +              KIPG+                            +Y+S QGNE+AEFC +HAND IL AGI   FGEYG  G       AG KRKQP P +PY L M      G SAG    +           +           T R A   AP  Q               F+P   P + R+   +     FR  PS+R L EG
Sbjct:   61 MSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEVSRGS---------KIPGAXXXXXX--XXXXXXXXXXXXXXXXXXXXSYISGQGNEKAEFCGKHANDQILSAGI---FGEYGDAGAXXXXXEAGAKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAAAASVPPPFMMTPRPAFSGAPQQQQQPNDTRYVKNESLEFRPLSAPSNDRHLGAAESLAHFRSSPSERCLMEG 350
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.190e-22
Identity = 160/384 (41.67%), Postives = 181/384 (47.14%), Query Frame = 1 
Query:    1 MSQCGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRCIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSQQAPAAGGGGSGNSSGKIPGSSCAQQQGNEGFGGLRSKRCGRHGCTLQATYVSSQGNERAEFCAQHANDGILPAGIISGFGEYGIGGH--AAGGAAAGVKRKQPSPPSPYALAMA-----GFSAGATGSAXXXXXXXXXXXSGTKRAALPTAPV-------------------------------------MQFQPQVQPHSGRYTSGSGDSLQFRHHPSQRYLAEGPQFPPQPHERYLGGGGS---QFRAQSA---ERYHIGGAGLTPVGAAGESGGYSDEIATVFDKEMPL 1002
            MSQCGH +C+KRPTYGVAGS KREFCSQHA++GM+NVNNKRCIQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +          KIPG+                                              ND IL AG+   FGEYG  G   A        KRKQP P +PY L M      G SAG    +              + A LP A                                       ++F+P   P + RY   +     FR  PS+RY+              LGGGG    QFR Q     +RY  G AGL PVGA  ES  YS+EIA VFD+EMPL
Sbjct:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS----------KIPGACXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEILAAGM---FGEYGDAGATPAXXXXXXXXKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNK---------RTAVLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRASPSERYMNN------------LGGGGGEMQQFRPQQLSPNDRY--GAAGLMPVGA--ESSAYSEEIAAVFDREMPL 344
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   10 CGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRC 126
            C  H C+ RP+YG+ GS K EFCS+H+K GM NV  KRC
Sbjct:   31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.980e-6
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   10 CGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRC 126
            C  H C+ RP+YG+ G  K EFCS+H+K GMIN+  KRC
Sbjct:   27 CQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: D7FWU8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 QCGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRC 126
            +C H  CSKRPTYGV  S KRE CSQHA+  M+N++  RC
Sbjct:   55 KCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 94
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.200e-5
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   10 CGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRC 126
            C    CS RP+YG   S K EFCSQHAK+GM+NV +KRC
Sbjct:  248 CEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: A0A6H5KRV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.930e-5
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   10 CGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINV 111
            CGH  C KRP++G  GSTK EFCSQHA +GM+NV
Sbjct:   37 CGHPGCIKRPSFGNDGSTKAEFCSQHAWKGMVNV 70
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BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Match: A0A6H5KFP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.930e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 QCGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRC 126
            +C +  CSKRPTYGV  S KRE CSQHA+  M+N++  RC
Sbjct:    6 KCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13081.2544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE7.340e-2747.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI4.190e-2241.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI1.240e-658.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KY67_9PHAE3.980e-656.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU8_ECTSI1.140e-560.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FLW1_ECTSI3.200e-561.54EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KRV0_9PHAE5.930e-567.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP4_9PHAE6.930e-557.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13081contigH-canaliculatus_F_contig13081:1733..2737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_003640.1
Exons1
Model size1005
Cds size1005
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.350315-CDS-H-canaliculatus_F_contig13081:1732..27371622929042.350315-CDS-H-canaliculatus_F_contig13081:1732..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13081 1733..2737 -
1696845658.354123-CDS-H-canaliculatus_F_contig13081:1732..27371696845658.354123-CDS-H-canaliculatus_F_contig13081:1732..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13081 1733..2737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13081.2544.1prot_H-canaliculatus_F_contig13081.2544.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13081 1733..2737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13081.2544.1

>prot_H-canaliculatus_F_contig13081.2544.1 ID=prot_H-canaliculatus_F_contig13081.2544.1|Name=mRNA_H-canaliculatus_F_contig13081.2544.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=335bp
MSQCGHHSCSKRPTYGVAGSTKREFCSQHAKEGMINVNNKRCIQANCTTI
PSFAVAGSKKAEFCSQHAREGMIDVRSKRCSQRGCSTQPSSQQAPAAGGG
GSGNSSGKIPGSSCAQQQGNEGFGGLRSKRCGRHGCTLQATYVSSQGNER
AEFCAQHANDGILPAGIISGFGEYGIGGHAAGGAAAGVKRKQPSPPSPYA
LAMAGFSAGATGSAAATASSSGGSSSGTKRAALPTAPVMQFQPQVQPHSG
RYTSGSGDSLQFRHHPSQRYLAEGPQFPPQPHERYLGGGGSQFRAQSAER
YHIGGAGLTPVGAAGESGGYSDEIATVFDKEMPL*
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mRNA from alignment at H-canaliculatus_F_contig13081:1733..2737-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13081.2544.1 ID=mRNA_H-canaliculatus_F_contig13081.2544.1|Name=mRNA_H-canaliculatus_F_contig13081.2544.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13081:1733..2737- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCAGTGCGGCCACCACAGCTGCTCCAAGCGGCCGACATATGGCGT
GGCCGGCTCAACCAAGCGAGAATTTTGCTCCCAGCACGCCAAGGAAGGGA
TGATCAACGTCAACAACAAGCGCTGCATCCAAGCAAACTGCACCACGATC
CCGTCCTTCGCCGTGGCAGGGAGCAAGAAGGCTGAGTTCTGCTCGCAGCA
CGCCAGGGAAGGGATGATCGACGTCCGAAGCAAGAGGTGCAGCCAGCGCG
GTTGCAGCACGCAGCCGTCGTCGCAGCAGGCCCCCGCAGCCGGAGGCGGC
GGCAGTGGCAACAGCAGCGGCAAGATCCCCGGCTCCTCCTGCGCTCAGCA
GCAGGGCAACGAAGGCTTCGGAGGCCTGCGCAGCAAGCGGTGCGGCCGCC
ACGGCTGCACCCTCCAGGCGACCTACGTCTCGAGCCAAGGCAATGAAAGA
GCAGAGTTTTGCGCGCAGCACGCAAACGACGGGATCCTACCGGCGGGTAT
TATCAGTGGTTTCGGTGAATACGGAATCGGTGGGCATGCAGCCGGTGGCG
CGGCGGCCGGGGTGAAGAGGAAGCAACCCTCCCCTCCCTCCCCGTACGCG
CTGGCGATGGCCGGCTTTTCCGCGGGAGCGACGGGGAGCGCGGCGGCGAC
GGCGAGCAGCAGCGGCGGCAGCAGCAGCGGCACCAAGCGGGCCGCCCTAC
CGACGGCTCCGGTGATGCAGTTCCAGCCGCAGGTGCAGCCGCACTCCGGC
AGGTACACGAGCGGCTCGGGGGACAGCCTACAGTTTCGGCACCACCCGAG
CCAGAGGTACCTCGCCGAGGGCCCGCAGTTCCCCCCGCAGCCGCACGAGA
GGTATCTCGGGGGCGGCGGCTCGCAGTTCCGTGCCCAATCAGCGGAAAGG
TACCACATCGGAGGCGCCGGCTTGACACCAGTGGGTGCTGCGGGGGAGAG
CGGAGGATATTCTGACGAGATCGCCACTGTATTCGACAAGGAGATGCCTC
TCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13081:1733..2737-

>mRNA_H-canaliculatus_F_contig13081.2544.1 ID=mRNA_H-canaliculatus_F_contig13081.2544.1|Name=mRNA_H-canaliculatus_F_contig13081.2544.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2010bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13081:1733..2737- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCAGTGCGGCCACCACAGCTGCTCCAAGCGGCCGACATATGGCGT
GGCCGGCTCAACCAAGCGAGAATTTTGCTCCCAGCACGCCAAGGAAGGGA
TGATCAACGTCAACAACAAGCGCTGCATCCAAGCAAACTGCACCACGATC
CCGTCCTTCGCCGTGGCAGGGAGCAAGAAGGCTGAGTTCTGCTCGCAGCA
CGCCAGGGAAGGGATGATCGACGTCCGAAGCAAGAGGTGCAGCCAGCGCG
GTTGCAGCACGCAGCCGTCGTCGCAGCAGGCCCCCGCAGCCGGAGGCGGC
GGCAGTGGCAACAGCAGCGGCAAGATCCCCGGCTCCTCCTGCGCTCAGCA
GCAGGGCAACGAAGGCTTCGGAGGCCTGCGCAGCAAGCGGTGCGGCCGCC
ACGGCTGCACCCTCCAGGCGACCTACGTCTCGAGCCAAGGCAATGAAAGA
GCAGAGTTTTGCGCGCAGCACGCAAACGACGGGATCCTACCGGCGGGTAT
TATCAGTGGTTTCGGTGAATACGGAATCGGTGGGCATGCAGCCGGTGGCG
CGGCGGCCGGGGTGAAGAGGAAGCAACCCTCCCCTCCCTCCCCGTACGCG
CTGGCGATGGCCGGCTTTTCCGCGGGAGCGACGGGGAGCGCGGCGGCGAC
GGCGAGCAGCAGCGGCGGCAGCAGCAGCGGCACCAAGCGGGCCGCCCTAC
CGACGGCTCCGGTGATGCAGTTCCAGCCGCAGGTGCAGCCGCACTCCGGC
AGGTACACGAGCGGCTCGGGGGACAGCCTACAGTTTCGGCACCACCCGAG
CCAGAGGTACCTCGCCGAGGGCCCGCAGTTCCCCCCGCAGCCGCACGAGA
GGTATCTCGGGGGCGGCGGCTCGCAGTTCCGTGCCCAATCAGCGGAAAGG
TACCACATCGGAGGCGCCGGCTTGACACCAGTGGGTGCTGCGGGGGAGAG
CGGAGGATATTCTGACGAGATCGCCACTGTATTCGACAAGGAGATGCCTC
TCTAGATGAGCCAGTGCGGCCACCACAGCTGCTCCAAGCGGCCGACATAT
GGCGTGGCCGGCTCAACCAAGCGAGAATTTTGCTCCCAGCACGCCAAGGA
AGGGATGATCAACGTCAACAACAAGCGCTGCATCCAAGCAAACTGCACCA
CGATCCCGTCCTTCGCCGTGGCAGGGAGCAAGAAGGCTGAGTTCTGCTCG
CAGCACGCCAGGGAAGGGATGATCGACGTCCGAAGCAAGAGGTGCAGCCA
GCGCGGTTGCAGCACGCAGCCGTCGTCGCAGCAGGCCCCCGCAGCCGGAG
GCGGCGGCAGTGGCAACAGCAGCGGCAAGATCCCCGGCTCCTCCTGCGCT
CAGCAGCAGGGCAACGAAGGCTTCGGAGGCCTGCGCAGCAAGCGGTGCGG
CCGCCACGGCTGCACCCTCCAGGCGACCTACGTCTCGAGCCAAGGCAATG
AAAGAGCAGAGTTTTGCGCGCAGCACGCAAACGACGGGATCCTACCGGCG
GGTATTATCAGTGGTTTCGGTGAATACGGAATCGGTGGGCATGCAGCCGG
TGGCGCGGCGGCCGGGGTGAAGAGGAAGCAACCCTCCCCTCCCTCCCCGT
ACGCGCTGGCGATGGCCGGCTTTTCCGCGGGAGCGACGGGGAGCGCGGCG
GCGACGGCGAGCAGCAGCGGCGGCAGCAGCAGCGGCACCAAGCGGGCCGC
CCTACCGACGGCTCCGGTGATGCAGTTCCAGCCGCAGGTGCAGCCGCACT
CCGGCAGGTACACGAGCGGCTCGGGGGACAGCCTACAGTTTCGGCACCAC
CCGAGCCAGAGGTACCTCGCCGAGGGCCCGCAGTTCCCCCCGCAGCCGCA
CGAGAGGTATCTCGGGGGCGGCGGCTCGCAGTTCCGTGCCCAATCAGCGG
AAAGGTACCACATCGGAGGCGCCGGCTTGACACCAGTGGGTGCTGCGGGG
GAGAGCGGAGGATATTCTGACGAGATCGCCACTGTATTCGACAAGGAGAT
GCCTCTCTAG
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