mRNA_H-canaliculatus_F_contig13079.2542.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13079.2542.1
Unique NamemRNA_H-canaliculatus_F_contig13079.2542.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.980e-58
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKKVRR---DAAG 324
            SMLQCLLATES STYFR+QHWKREVNEDNPLGMGGKMAAAYA L DDAWSGE+SVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK      D+AG
Sbjct:  555 SMLQCLLATESLSTYFRSQHWKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKKPYMETVDSAG 665          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: A0A836CC49_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC49_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.970e-32
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKKVRRDAA 321
            SMLQCL AT + + YF++  W  ++NEDN LG  GKMA AYA L  + W G ++ V P  +K+V+ ++AP FAGYQQ D+ ELM FLLDG+HEDLNRV +K   +A 
Sbjct:   71 SMLQCLSATGALTAYFKSGGWSVDLNEDNALGADGKMARAYAELVRNLWDGRYTQVAPAALKRVIGEHAPAFAGYQQQDSQELMIFLLDGLHEDLNRVRRKPYVEAV 177          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: W7U3R5_9STRA (Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3R5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.070e-32
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK---VRRDAAG 324
            SMLQCL  T   + +F +   + ++NEDNPLG  G +A  YA+L  D WSG F+ + P   K+V+SQYAP FAGYQQHD+ ELM+FLLDG+HEDLNRV +K     RD AG
Sbjct:  599 SMLQCLSHTGVLTDFFLSGKHEGQINEDNPLGKQGVLARTYAKLLKDMWSGRFTFIYPTEFKRVISQYAPQFAGYQQHDSQELMNFLLDGLHEDLNRVRQKPYMAVRDYAG 709          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: F6XSL1_CIOIN (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6XSL1_CIOIN)

HSP 1 Score: 126 bits (317), Expect = 1.420e-31
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            S LQCL    +   YF N+ +K+E+N+ NPLGMGGK+A AYARL    WSGE S   P   K  V ++AP F+GYQQHD+ EL+SFL+DG+HEDLNR+ KK
Sbjct:  303 SALQCLSNVPALCNYFLNETYKKELNKTNPLGMGGKLAKAYARLVQSIWSGEQSSFAPREFKMEVGRFAPRFSGYQQHDSQELLSFLVDGLHEDLNRISKK 403          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: A0A7S2Y964_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y964_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.690e-31
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMG-GKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            S LQCL AT   + YF    +KRE+N DNPLG G G++A AYA +  + WSG+   + P+  KK + ++AP F GYQQHDA EL++F+LDGIHEDLNRV +K
Sbjct:    9 SSLQCLSATIPLTDYFLGYDYKREINHDNPLGTGHGQLATAYANMLSNLWSGKSLSIKPSKFKKQLGEFAPQFQGYQQHDAQELLAFMLDGIHEDLNRVKQK 110          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: A0A7S0MND2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MND2_9CRYP)

HSP 1 Score: 119 bits (299), Expect = 3.130e-31
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAW-SGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            S LQCL  TE+ + YF   HW++++NE+NPLGM G++A AY  +  D W +G+   V P  +K V++++AP FAG+ QHDA EL+SFLLDG+HEDLNRV +K
Sbjct:   36 SALQCLSNTEALTRYFLQGHWQQDLNEENPLGMKGQLAEAYCSVLQDLWGNGQAFSVNPRELKAVIARFAPHFAGFLQHDAQELLSFLLDGLHEDLNRVREK 137          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: H2ZMR1_CIOSA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZMR1_CIOSA)

HSP 1 Score: 125 bits (314), Expect = 3.390e-31
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            S LQCL    + + YF++  +K+E+N+ NPLGMGGK+A AYA+L    WSG+ S   P   K  VSQ+AP F+GYQQHD+ EL SFL+DG+HEDLNR+ KK
Sbjct:  127 SALQCLSNVPAMTNYFKSNTYKKELNKTNPLGMGGKLAQAYAQLIQSIWSGDQSSFAPREFKMKVSQFAPRFSGYQQHDSQELFSFLVDGLHEDLNRISKK 227          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: H2ZMQ7_CIOSA (Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Ciona savignyi TaxID=51511 RepID=H2ZMQ7_CIOSA)

HSP 1 Score: 125 bits (314), Expect = 3.600e-31
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            S LQCL    + + YF++  +K+E+N+ NPLGMGGK+A AYA+L    WSG+ S   P   K  VSQ+AP F+GYQQHD+ EL SFL+DG+HEDLNR+ KK
Sbjct:  262 SALQCLSNVPAMTNYFKSNTYKKELNKTNPLGMGGKLAQAYAQLIQSIWSGDQSSFAPREFKMKVSQFAPRFSGYQQHDSQELFSFLVDGLHEDLNRISKK 362          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: A0A812W4G2_9DINO (Usp4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W4G2_9DINO)

HSP 1 Score: 125 bits (313), Expect = 4.970e-31
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 303
            SMLQCL A E  + +F +  W+ EVN DN LG GG++A+AYA L +  WSG++SV  P+ VK  V + +P F G+QQHD+ ELMSFLLDGIHEDLNR+ KK
Sbjct:  303 SMLQCLNACEPLTQHFLDGKWEAEVNPDNVLGQGGRIASAYAALLEAMWSGKYSVCSPSVVKSEVGRASPQFQGFQQHDSQELMSFLLDGIHEDLNRILKK 403          
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Match: A0A8C5MUM4_9ANUR (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MUM4_9ANUR)

HSP 1 Score: 124 bits (312), Expect = 6.760e-31
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 SMLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSGEFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKKVR---RDAAG 324
            S LQCL  T   + YFR   +K+E+N DNPLGM G++A AYA L    WSGE S V P   K  V ++AP F+GYQQ D+ EL++FLLDG+HEDLNRV KK     +DA G
Sbjct:  318 SALQCLSNTPPLTEYFRTDEYKKEINRDNPLGMKGEIAMAYAELIRQIWSGEHSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANG 428          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13079.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S6_ECTSI2.980e-5889.19Similar to ubiquitin specific peptidase 15 n=2 Tax... [more]
A0A836CC49_9STRA1.970e-3253.27Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
W7U3R5_9STRA3.070e-3254.95Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Mo... [more]
F6XSL1_CIOIN1.420e-3156.44Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cion... [more]
A0A7S2Y964_9STRA1.690e-3153.92Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S0MND2_9CRYP3.130e-3152.94Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
H2ZMR1_CIOSA3.390e-3155.45Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cion... [more]
H2ZMQ7_CIOSA3.600e-3155.45Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Cion... [more]
A0A812W4G2_9DINO4.970e-3157.43Usp4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A8C5MUM4_9ANUR6.760e-3154.05Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Lept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13079contigH-canaliculatus_F_contig13079:1764..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.1e-49
Seed eggNOG ortholog2880.D7G0S6
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13079.2542.1prot_H-canaliculatus_F_contig13079.2542.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13079 1767..2922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.1641414-UTR-H-canaliculatus_F_contig13079:1763..17661622929042.1641414-UTR-H-canaliculatus_F_contig13079:1763..1766Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13079 1764..1766 +
1696845658.2668521-UTR-H-canaliculatus_F_contig13079:1763..17661696845658.2668521-UTR-H-canaliculatus_F_contig13079:1763..1766Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13079 1764..1766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.1868727-CDS-H-canaliculatus_F_contig13079:1766..19041622929042.1868727-CDS-H-canaliculatus_F_contig13079:1766..1904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13079 1767..1904 +
1696845658.283274-CDS-H-canaliculatus_F_contig13079:1766..19041696845658.283274-CDS-H-canaliculatus_F_contig13079:1766..1904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13079 1767..1904 +
1622929042.2003524-CDS-H-canaliculatus_F_contig13079:2733..29221622929042.2003524-CDS-H-canaliculatus_F_contig13079:2733..2922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13079 2734..2922 +
1696845658.2949474-CDS-H-canaliculatus_F_contig13079:2733..29221696845658.2949474-CDS-H-canaliculatus_F_contig13079:2733..2922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13079 2734..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13079.2542.1

>prot_H-canaliculatus_F_contig13079.2542.1 ID=prot_H-canaliculatus_F_contig13079.2542.1|Name=mRNA_H-canaliculatus_F_contig13079.2542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MLQCLLATESFSTYFRNQHWKREVNEDNPLGMGGKMAAAYARLTDDAWSG
EFSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK
VRRDAAGF*
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mRNA from alignment at H-canaliculatus_F_contig13079:1764..2922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13079.2542.1 ID=mRNA_H-canaliculatus_F_contig13079.2542.1|Name=mRNA_H-canaliculatus_F_contig13079.2542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1159bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13079:1764..2922+ (Hapterophycus canaliculatus Oshoro5f female)
AGCATGCTGCAGTGTCTGCTGGCCACGGAGTCGTTCTCCACGTATTTCCG GAACCAGCACTGGAAGAGGGAGGTGAACGAGGACAACCCGCTCGGAATGG GCGGCAAGATGGCGGCGGCGTACGCGCGCCTGACGGACGACGTGAGTTAA AAAAAAAGGAGGACGAGAAAAGACGAGAAAAAAAAGAAGAGAAAAAAAAA GAAGAGCAAAAAAAGAACAAGGAACGAAGAAAAAATCCGTTGTAGTCTCT TGTTGTCTCTGAACGTCGACGCGGAATCGTGGTAGGGAAGAGTAGAAGCG CGTTGCCGACGACGTGCGCTCGAAGGAGGAGCACCAGTCCTCGACGGAGA CGACAGCTAAAAAAAAAATGAGGGAAGGCGTTGTGTGTGCAGGGAAGGGC TTTGAGTCCCGGGGAATATGCGCCTCCTCGACGGCCTCACGTCGAAAAGG GGCAACAAGGAGGGTCCAGAGCGAGAGGCCCAAGTCGTTCGTCCGCCGTT TTCTTGTAGGCAGCCCGGCTGCGAGGCGGTGGGTTGGCTTCGCTTGTTCA CTGGAGCGAGGGGAACAACAACACCTGGAGATCGCGATAGACAGGCGTGT ATGCTTGTCGGCAGGAAGTGGGTTGTTTCTTGGAGGAGAAGTGGGTGAGG TCCTCGACCCCTGCTGCTGCACGGACAGCGGCAGCTGTGTACCGGCAGCC ACCGAACGCTCGGTTCTGCATGGGTTTGGGTCCAGTTGTGATGACGGAAA GTCTAGCCCGCGGGCCCAGAGCTCTCCAGCAGCGAGCTCGTTTCCAACGC GGCGTCCAAGCTAGCCTTCGCCGCCGCGCGCGTGTCGTCGCTTCTTCGGC GGTCATGTTGCGCACCCATACGGTATCCGACACAACAGTTCATCTCGCGC ATTTTCCATCAAAAGATTAGCTTGAACCGTCTGCTTCTCTCTCTCTCTCT CTCTCTCCCTCGGCCGGCAGGCGTGGTCGGGAGAGTTCTCCGTCGTGGTG CCCAACACGGTGAAGAAGGTGGTGTCGCAGTACGCCCCCATGTTCGCGGG GTACCAGCAGCACGACGCGAGCGAGCTGATGAGCTTCCTCCTGGACGGCA TCCACGAAGACCTCAACCGCGTGCACAAGAAGGTGCGGCGGGACGCGGCA GGATTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13079:1764..2922+

>mRNA_H-canaliculatus_F_contig13079.2542.1 ID=mRNA_H-canaliculatus_F_contig13079.2542.1|Name=mRNA_H-canaliculatus_F_contig13079.2542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13079:1764..2922+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCAGTGTCTGCTGGCCACGGAGTCGTTCTCCACGTATTTCCGGAA
CCAGCACTGGAAGAGGGAGGTGAACGAGGACAACCCGCTCGGAATGGGCG
GCAAGATGGCGGCGGCGTACGCGCGCCTGACGGACGACATGCTGCAGTGT
CTGCTGGCCACGGAGTCGTTCTCCACGTATTTCCGGAACCAGCACTGGAA
GAGGGAGGTGAACGAGGACAACCCGCTCGGAATGGGCGGCAAGATGGCGG
CGGCGTACGCGCGCCTGACGGACGACGCGTGGTCGGGAGAGTTCTCCGTC
GTGGTGCCCAACACGGTGAAGAAGGTGGTGTCGCAGTACGCCCCCATGTT
CGCGGGGTACCAGCAGCACGACGCGAGCGAGCTGATGAGCTTCCTCCTGG
ACGGCATCCACGAAGACCTCAACCGCGTGCACAAGAAGGTGCGGCGGGAC
GCGGCAGGATTTTAGGCGTGGTCGGGAGAGTTCTCCGTCGTGGTGCCCAA
CACGGTGAAGAAGGTGGTGTCGCAGTACGCCCCCATGTTCGCGGGGTACC
AGCAGCACGACGCGAGCGAGCTGATGAGCTTCCTCCTGGACGGCATCCAC
GAAGACCTCAACCGCGTGCACAAGAAGGTGCGGCGGGACGCGGCAGGATT
TTAG
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