mRNA_H-canaliculatus_F_contig13064.2534.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13064.2534.1
Unique NamemRNA_H-canaliculatus_F_contig13064.2534.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A5E7ZEP0_9RHOB (Uncharacterized protein n=1 Tax=Roseovarius sp. EC-HK134 TaxID=2038394 RepID=A0A5E7ZEP0_9RHOB)

HSP 1 Score: 91.7 bits (226), Expect = 3.100e-23
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SGGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDLIQ 144
            SGGLPHSEIHGS+LILSS WLIAEYHV HRLLLPRH PNALLALDLIQ
Sbjct:   29 SGGLPHSEIHGSQLILSSSWLIAEYHVLHRLLLPRHPPNALLALDLIQ 76
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: F9Y964_KETVW (Uncharacterized protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=F9Y964_KETVW)

HSP 1 Score: 75.5 bits (184), Expect = 2.900e-17
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   29 MDQSLFSAPHGLSQSITSFIASYCQGIHQTPFSRLI 136
            MDQSLFSAPHGLSQSITSFIASYCQGIHQTPFSRLI
Sbjct:    1 MDQSLFSAPHGLSQSITSFIASYCQGIHQTPFSRLI 36
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: H6SIB0_PARPM (Uncharacterized protein n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIB0_PARPM)

HSP 1 Score: 74.7 bits (182), Expect = 3.140e-16
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 GGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALD 135
            GGLPHSEIHGSK  L SPWLIAE HV HRLL PRH P+ALL LD
Sbjct:    9 GGLPHSEIHGSKPALGSPWLIAECHVLHRLLTPRHPPDALLLLD 52
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A382IXL2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382IXL2_9ZZZZ)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-14
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 2 
Query:    5 VGCPIQKSMDQSLFSAPHGLSQSITSFIASYCQGIHQTPFSRLI 136
            VGCPI+KS DQSL +AP GL+Q +TSFIAS CQGIHQ PF  LI
Sbjct:   11 VGCPIRKSSDQSLLAAPQGLTQPVTSFIASQCQGIHQMPFRHLI 54
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A1Y4M0B8_9FIRM (Uncharacterized protein n=1 Tax=Anaerotruncus colihominis TaxID=169435 RepID=A0A1Y4M0B8_9FIRM)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-13
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 SGGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDLIQ 144
            S GL HS+IHGS+LI SSPWL A YHVF RL +PRHSP AL +L +++
Sbjct:    4 SAGLLHSDIHGSRLICSSPWLFAAYHVFRRLPVPRHSPCALCSLTMLE 51
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A833JH42_9PROT (Uncharacterized protein n=1 Tax=Komagataeibacter medellinensis TaxID=1177712 RepID=A0A833JH42_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 1.140e-13
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2 
Query:    5 VGCPIQKSMDQSLFSAPHGLSQSITSFIASYCQGIHQTPFSR 130
            VGCPIQ S DQSL +APHG SQ  TSFIAS+CQGIH+ P SR
Sbjct:   11 VGCPIQISTDQSLLAAPHGFSQRATSFIASWCQGIHRMPLSR 52
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A1Y4UDK6_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An112 TaxID=1965544 RepID=A0A1Y4UDK6_9FIRM)

HSP 1 Score: 65.1 bits (157), Expect = 9.510e-13
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 SGGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDLIQK 147
            S G PHSEI GSKL+ SSP LIA  HV HRLL+PRHSP AL +L L+++
Sbjct:   23 SAGFPHSEICGSKLMCSSPQLIAACHVLHRLLMPRHSPCALYSLTLVEQ 71
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A8J4V5I2_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V5I2_9ROSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.710e-12
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 GGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALD 135
            GG PHSEI GSKL+ SSP LIA YHV HRL  PRH PNAL ALD
Sbjct:  120 GGFPHSEIPGSKLVRSSPRLIAAYHVLHRLSAPRHPPNALKALD 163
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: A0A164GMD8_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164GMD8_9CRUS)

HSP 1 Score: 63.9 bits (154), Expect = 2.720e-12
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 GGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDL 138
            GG PHSEI GSKL  SSP LIA YHVF RL LPRH P+AL+ L L
Sbjct:   30 GGFPHSEISGSKLFASSPKLIAGYHVFRRLSLPRHPPHALIHLTL 74
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BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Match: B0MI68_ANACD (Uncharacterized protein n=2 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MI68_ANACD)

HSP 1 Score: 63.2 bits (152), Expect = 6.540e-12
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SGGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDL 138
            S G PHSEI GSK I SSP LIA YHVFHRLL+PRH P AL  L +
Sbjct:    6 SAGFPHSEICGSKDICSSPQLIAAYHVFHRLLVPRHPPYALSTLTI 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13064.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E7ZEP0_9RHOB3.100e-2391.67Uncharacterized protein n=1 Tax=Roseovarius sp. EC... [more]
F9Y964_KETVW2.900e-17100.00Uncharacterized protein n=2 Tax=Rhodobacterales Ta... [more]
H6SIB0_PARPM3.140e-1679.55Uncharacterized protein n=2 Tax=Pararhodospirillum... [more]
A0A382IXL2_9ZZZZ1.190e-1472.73Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A1Y4M0B8_9FIRM1.100e-1364.58Uncharacterized protein n=1 Tax=Anaerotruncus coli... [more]
A0A833JH42_9PROT1.140e-1373.81Uncharacterized protein n=1 Tax=Komagataeibacter m... [more]
A0A1Y4UDK6_9FIRM9.510e-1365.31Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
A0A8J4V5I2_9ROSI1.710e-1275.00Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A164GMD8_9CRUS2.720e-1271.11Uncharacterized protein n=1 Tax=Daphnia magna TaxI... [more]
B0MI68_ANACD6.540e-1269.57Uncharacterized protein n=2 Tax=Anaerostipes cacca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13064contigH-canaliculatus_F_contig13064:1272..1421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog411490.ANACAC_01115
EggNOG free text desc.ORF located using Blastx
EggNOG OGs1VFF8@1239,24S9D@186801,2DPDN@1,331NP@2
COG Functional cat.S
Best tax levelClostridia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.6195948-CDS-H-canaliculatus_F_contig13064:1271..14211622929041.6195948-CDS-H-canaliculatus_F_contig13064:1271..1421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 1272..1421 -
1696845658.0740452-CDS-H-canaliculatus_F_contig13064:1271..14211696845658.0740452-CDS-H-canaliculatus_F_contig13064:1271..1421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 1272..1421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13064.2534.1prot_H-canaliculatus_F_contig13064.2534.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13064 1272..1421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13064.2534.1

>prot_H-canaliculatus_F_contig13064.2534.1 ID=prot_H-canaliculatus_F_contig13064.2534.1|Name=mRNA_H-canaliculatus_F_contig13064.2534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
SGGLPHSEIHGSKLILSSPWLIAEYHVFHRLLLPRHSPNALLALDLIQK*
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mRNA from alignment at H-canaliculatus_F_contig13064:1272..1421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13064.2534.1 ID=mRNA_H-canaliculatus_F_contig13064.2534.1|Name=mRNA_H-canaliculatus_F_contig13064.2534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:1272..1421- (Hapterophycus canaliculatus Oshoro5f female)
TCAGGTGGGTTGCCCCATTCAGAAATCCATGGATCAAAGCTTATTCTCAG
CTCCCCATGGCTTATCGCAGAGTATCACGTCTTTCATCGCCTCTTACTGC
CAAGGCATTCACCAAACGCCCTTCTCGCGCTTGATCTGATCCAGAAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13064:1272..1421-

>mRNA_H-canaliculatus_F_contig13064.2534.1 ID=mRNA_H-canaliculatus_F_contig13064.2534.1|Name=mRNA_H-canaliculatus_F_contig13064.2534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:1272..1421- (Hapterophycus canaliculatus Oshoro5f female)
TCAGGTGGGTTGCCCCATTCAGAAATCCATGGATCAAAGCTTATTCTCAG
CTCCCCATGGCTTATCGCAGAGTATCACGTCTTTCATCGCCTCTTACTGC
CAAGGCATTCACCAAACGCCCTTCTCGCGCTTGATCTGATCCAGAAATAG
TCAGGTGGGTTGCCCCATTCAGAAATCCATGGATCAAAGCTTATTCTCAG
CTCCCCATGGCTTATCGCAGAGTATCACGTCTTTCATCGCCTCTTACTGC
CAAGGCATTCACCAAACGCCCTTCTCGCGCTTGATCTGATCCAGAAATAG
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