mRNA_H-canaliculatus_F_contig1306.2530.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1306.2530.1 vs. uniprot
Match: D7FN23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN23_ECTSI) HSP 1 Score: 384 bits (985), Expect = 7.650e-131 Identity = 205/305 (67.21%), Postives = 253/305 (82.95%), Query Frame = 1
Query: 1 LEAVVRVQCLFRGCMARNRVAGRREALAFLRSSCFGVTIDLIDAYIREDVAPRMIHGILGKGYEGGETGAAQRAEAVAAANTLLEETSASLIRELVALGLTEEANDHLDAVFVRDRRNPLLVTVDDIIAEALRKWMREVVVEVVKEGAGDFLFDRRISELVDXXXXXGMVEAVRPVAAEVYHSAIAFAAFSKVEEELCAEEAKLVVAETMAPFEDQLVELQREKDVAAIQAAAHHVMIKGLQLQHAARTIGQRGRLVLMSDINGKTLNLLLAGRFLAILRAAETNCQQVSTSPLLFMLFRRLVVR 915
+ A+V VQ + RG ARNRVAGRR A+ LR++C GV +++I+AYIREDVAP +I LG G+EG + +QRAEA +AA+ ++EET+ASLIR LV++ L EEA+ HLD V+VRDRRNPLL TVDD+++EALR WMRE V EVVKE A +FLF +RIS LV+ G+VEAV P+A+EVY++A A A+F ++EEELC+ EA+ VV+ETMAPFEDQL+ELQREKD AAIQA A+ V++KGLQLQHAART+GQRG+LV MSDI+GKTLNLLLAGRFL+ILRAAETN QVSTSPLLFMLFRRLVVR
Sbjct: 1 MRAIVTVQRIARGIAARNRVAGRRIAVEMLRTACLGVAMEIIEAYIREDVAPDVISDALGVGFEGVHSVVSQRAEAASAAHAIMEETAASLIRGLVSMTLAEEADSHLDVVYVRDRRNPLLATVDDLVSEALRVWMREAVTEVVKECAEEFLFGKRISVLVETVLEEGVVEAVWPIASEVYYNAAALASFLEIEEELCSNEARSVVSETMAPFEDQLIELQREKDFAAIQATAYGVIVKGLQLQHAARTVGQRGKLVAMSDIHGKTLNLLLAGRFLSILRAAETNRLQVSTSPLLFMLFRRLVVR 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1306.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1306.2530.1 >prot_H-canaliculatus_F_contig1306.2530.1 ID=prot_H-canaliculatus_F_contig1306.2530.1|Name=mRNA_H-canaliculatus_F_contig1306.2530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=305bp LEAVVRVQCLFRGCMARNRVAGRREALAFLRSSCFGVTIDLIDAYIREDVback to top mRNA from alignment at H-canaliculatus_F_contig1306:9878..14492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1306.2530.1 ID=mRNA_H-canaliculatus_F_contig1306.2530.1|Name=mRNA_H-canaliculatus_F_contig1306.2530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1306:9878..14492+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1306:9878..14492+ >mRNA_H-canaliculatus_F_contig1306.2530.1 ID=mRNA_H-canaliculatus_F_contig1306.2530.1|Name=mRNA_H-canaliculatus_F_contig1306.2530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1306:9878..14492+ (Hapterophycus canaliculatus Oshoro5f female)back to top |