mRNA_H-canaliculatus_F_contig1306.2529.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1306.2529.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI) HSP 1 Score: 460 bits (1183), Expect = 7.040e-146 Identity = 443/905 (48.95%), Postives = 505/905 (55.80%), Query Frame = 1
Query: 58 MPGRPWSASVRLFSSADESSDSSDTSSGGWDRTARDAAGRGSPPPR-DVSPSKLALPALAAALRASXXXXXXXXXXXCRCQHLICAFL---------------HRLLGETERLRAALKIARKREERANRCESDLAKSEARARELESDNRHLRRDLDAARLRTRQIEAKAGRSLSALRSTLEDVEQSQRERCKRRRATTRSQRALLESLRRHVQRGHHAAPSFTAFQLIEQIFECLKSLESDAELPFTPPSRETQRRRPSPAAAGRSSPSSA--LGFPXXXXXXRRPRSPTTGTGPPAPMTEGQPSPPPSGRSGREDNSGDAVGNLRRAGIGQGRAGGEWVEGFPSGAGSVGGVESFAFSSGGSGXXXXXXXXXXXXXXXXXVAGEGRGERGTTASSARFSTEWAYRLAVTKLTAQLRAARERLRGEKEASREAGERVEQEELRCRQLELEVEGLSSKVAAAEGHRRRLEAMLKEAKRERDVLKQRQGSTAATHALTAALGVLHQRRSPSTPQ-PYARAPXXXXXXXAAIRPTATAPHATSXXXXXXXXXXAPAETASEAL-NYGR-GKGLEPSALAPAYSGGGGSAWWDGDE-----KTEDQRHRYSR----PTTGEHTPVSPAPFATAARVAPVYADRQEEAEPRFS-HGLDAAYGGNEGNPGSMKRDARSEIQRIVDDAVANGTRRQAGVAGIGGAPGVFSGALTTDALSIPKAGRLEAGWGEYRRRGPGPSYGDSIL-------------------------------------RDTASTETRGGNTWPSTGAP--SINRAPPSRFVAAG----GGGDGRDVDGSTRTGRAPFKYTLGSGFXXXXXXXXXXXXXXRRPAGGVGEGSGSRTSSFGKLGPRAVTREDLTRLDDEIANLSKTVEE 2550
MPG PWSA R+FSS D+SSDSSDTSS W+ + GS P DVSPSKLALPALA ALRAS XXXXXX R L+CA L HRLL ET RLR +LK+ARK EERANRCE++LAKSE RARELESDNR LRRDLD ARLRTRQ EAKA SLS LR++LED++ QR RCKR RATTRSQRALLESLRRHVQRG H+APSFTAFQLIEQIF CL++LESDA+L P+R ++R PS A + + PS G P R P GP +T +P PSG S R D+ + +LR G+GR+ P+ ++ G XXXXXXXXXXXXXXXXX ++ARFSTEWAYRLAVTKLTAQL+A RERL GEKEA+R AG+RVEQEELRCRQLELEVEGLSSKVAAA+GHRRRLEAMLKE KRERD L++RQ STAAT L+AALG+LHQR++ S+P P XXXXXXX AT XXXXXXXXXX T SEAL N+GR LEPSALA A S G AWW+G E + QRH+ + P TG+ P SPA AP E PR + H A GG E R +IQRIVDDAV NGT R+ G GG G +P G YR R YG S L RDTA W S+ P +I R P R + AG GG R ++ G F G GS LGPRAVTREDLTRLD+EIANLSKTVE+
Sbjct: 1 MPGPPWSAGTRMFSSVDDSSDSSDTSSECWNPRSPGQHSIGSRPSGGDVSPSKLALPALATALRASRARXXXXXXKASRKYRLLCASLAAQASKAAHSGHYPWHRLLEETGRLRDSLKVARKGEERANRCETELAKSETRARELESDNRRLRRDLDGARLRTRQNEAKARSSLSTLRASLEDLDHEQRARCKRWRATTRSQRALLESLRRHVQRGLHSAPSFTAFQLIEQIFGCLETLESDAQLS---PARRRRQRSPSAACSPPADPSPPHRRGSPK-----RSPHVAAAAAGPR--VTVKGLTPIPSGVSDRLDD--EEATDLR---TGRGRS-------LPA---AIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTTARFSTEWAYRLAVTKLTAQLKATRERLHGEKEAARSAGDRVEQEELRCRQLELEVEGLSSKVAAADGHRRRLEAMLKETKRERDALRRRQNSTAATQTLSAALGILHQRQASSSPAYPXXXXXXXXXXXXXXAAFAATPQXXXXXXXXXXXXXXVYPATGSEALYNHGRDAPRLEPSALASACSPDGDGAWWEGGEGAGVERRHGQRHQPQQHTAAPDTGDGFPGSPA--------APAVRGGAEREPPRSARHAEGAGVGGRE-------LLTRRDIQRIVDDAVMNGTGRRGAGDGGGGDDVAGVGDSRAAGAELPGVG--------YRWRDTALGYGTSSLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGRRRDTA---------WLSSRPPITAIGRTPAERGIGAGAARVGGPPPRPKATNSEVGXXXXXXXXSVRF-----------------------GGGS------SLGPRAVTREDLTRLDNEIANLSKTVEQ 819
BLAST of mRNA_H-canaliculatus_F_contig1306.2529.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE) HSP 1 Score: 417 bits (1072), Expect = 4.330e-130 Identity = 422/893 (47.26%), Postives = 472/893 (52.86%), Query Frame = 1
Query: 58 MPGRPWSASVRLFSSADESSDSSDTSSGGWDRTARDAAGRGSPPPR-DVSPSKLALPALAAALRASXXXXXXXXXXXCRCQHLICAFLHRLLGETERLRAALKIARKREERANRCESDLAKSEARARELESDNRHLRRDLDAARLRTRQIEAKAGRSLSALRSTLEDVEQSQRERCKRRRATTRSQRALLESLRRHVQRGHHAAPSFTAFQLIEQIFECLKSLESDAELPFTPPSRETQRRRPSPAAAGRSSPSSALGFPXXXXXXRRPRSPTTGTGPPAPMTEGQPSPPPSGRSGREDNSGD-----AVGNLRRAGIGQGRAGGEWVEGFPSGA----GSVGGVESFAFSSGGSGXXXXXXXXXXXXXXXXXVAGEGRGERGTTASSARFSTEWAYRLAVTKLTAQLRAARERLRGEKEASREAGERVEQEELRCRQLELEVEGLSSKVAAAEGHRRRLEAMLKEAKRERDVLKQRQGSTAATHALTAALGVLHQRRSPSTPQPYARAPXXXXXXXAAIRPTATAPHATSXXXXXXXXXXAPA---ETASEALNYGRGKG---LEPSALAPAYS--GGGGSAWWDGDEKTE-----DQRHRYSR----PTTGEHTPVSPAPFATAARVAPVYADRQEEAEPRFSHGLDAAYGGNEGNPGSMKRDARSEIQRIVDDAVANGT-RRQAG-------VAGIGGAPGVFSGALTTDALSIPKAGRLEAGWGEYRRRGPGPSYGDSILRDTASTET-------------------------RGGNTWPSTGAPS--INRAPPSRFVAAGGGGDGRDVDGSTRTGRAPFKYTLGSGFXXXXXXXXXXXXXXRRPAGGVGEGSGSRTSSFGKLGPRAVTREDLTRLDDEIANLSKTVEE 2550
M G PWSA R+FSS D+SSDSSDTSS W+ + GS P DVSPSKLALPALA ALRAS A RLL ET RLR ALK+ARK EERANRCE++LAKSEARARELESDNR +RRDLD ARLR RQ EAKA SLS LR++LE +EQ QR RCKR RATTRSQRALLESLRRHVQRGHH+APSFTAFQLIEQIF CLK+LESDA+L P+R QR PS A + + PS R P + +T +P PS S R D+ D G A IG G GS G E F GG G ++ARFSTEWAYRLAVTKLTAQL+AARERL GEKEA+R AGERVEQ LELEVEGLSSKVAAA+GHRRRLEAMLKE KRERD L+ AL+AALG+LHQR++ S+P XXXXXXX A T XXXXXXXXXXAPA T SEAL Y G G LEP ALA A S GG G WW+G E T QRH+ + P TG+ SPAP A R+ R H A GG E RSEIQRIVDDAV NGT RR G VAG+GG+ + +P G YR R +G S L D R W S+ P+ I R P R + V G+ R G P + + XXXXXXXXXXX V G GS LGPRAVTREDLTRLD+EIANLSKTVE+
Sbjct: 1 MRGPPWSAGTRMFSSVDDSSDSSDTSSECWNPRSPGEHSIGSRPSGGDVSPSKLALPALATALRASRARAAAAQ-----------AKASRLLEETGRLRDALKVARKGEERANRCETELAKSEARARELESDNRRIRRDLDGARLRNRQNEAKARSSLSILRTSLEGLEQEQRARCKRWRATTRSQRALLESLRRHVQRGHHSAPSFTAFQLIEQIFGCLKTLESDAQLS---PARRRQRS-PSAACSPLTDPSPPR---RGGSPKRSPHAAVAAAAAGPRVTVKGLTPTPSSVSDRLDDEEDPDLRTGRGTNLPAAIGIGXXXXXXXXXXXXXXXXVDGSSGSQEEFQTQEGGGGR-----------------------------TTARFSTEWAYRLAVTKLTAQLKAARERLHGEKEAARSAGERVEQ-------LELEVEGLSSKVAAADGHRRRLEAMLKETKRERDALR----------ALSAALGILHQRQASSSPAYPPXXXXXXXXXXTAFSAT--------XXXXXXXXXXAPAVYPATVSEAL-YDHGGGAPRLEPRALAAARSRDGGSGGGWWEGGEGTGVEPRYGQRHQPQQHTAAPDTGDGFMGSPAPAVRGG------AGREPPRSAR--HAESAGVGGRE-------LLTRSEIQRIVDDAVMNGTGRRGTGDXXXXDDVAGVGGSHAAGA--------ELPGVG--------YRWRDTSLGFGSSSLLDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDTAWLSSRPPATAIGRTPAERGI----------VVGAARVGGPPXRPKATNXXXXXXXXXXXXX---------VSFGGGS------SLGPRAVTREDLTRLDNEIANLSKTVEQ 764 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1306.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1306.2529.1 >prot_H-canaliculatus_F_contig1306.2529.1 ID=prot_H-canaliculatus_F_contig1306.2529.1|Name=mRNA_H-canaliculatus_F_contig1306.2529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=850bp GVAEGRHVCSAGASACTLRMPGRPWSASVRLFSSADESSDSSDTSSGGWDback to top mRNA from alignment at H-canaliculatus_F_contig1306:950..6047- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1306.2529.1 ID=mRNA_H-canaliculatus_F_contig1306.2529.1|Name=mRNA_H-canaliculatus_F_contig1306.2529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5098bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1306:950..6047- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1306:950..6047- >mRNA_H-canaliculatus_F_contig1306.2529.1 ID=mRNA_H-canaliculatus_F_contig1306.2529.1|Name=mRNA_H-canaliculatus_F_contig1306.2529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5100bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1306:950..6047- (Hapterophycus canaliculatus Oshoro5f female)back to top |