mRNA_H-canaliculatus_F_contig13055.2528.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13055.2528.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.710e-27 Identity = 350/643 (54.43%), Postives = 374/643 (58.16%), Query Frame = 1
Query: 1 VKRRSLPGVCARMACEVLHDAEAFLLAVAASTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVAGYGSHWFWGHLRRSPAVAEQLLDAVLAKVEALSHEIVATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASGVAVSELCTALRGYCELVSLGRPAAAALVARRLQTAVTAPLNALESLLY--SHHPATVXXXXXXXXXXXXXXXXXGPSTTFAVERVAGGNTTIAIAGTGAAVWRLEEIVLCSILVSAGGVAVPDSGDXXXXXXXXXXXXXXXXXXXXSGSGDGAVGANAHEGARLCAAALRRLVVLCRSPAXXXXXXXXXXXXXXXXXXXXXXXXWLSCAGLYATLLLRGSRFDAMGELVGSVLGARANAPPPPLRGVEGTDALEALRDAALAASESEPEEXXXXTAXPPRQPPSPRAPLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAGGAEGGMPPLSLGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----GAGWFSEAALADCVKALP------APGADSGSGLAAMEREGTAG---TTVGAALGEA--TAWGGGRWWFGPVDCVEEALEQ 1878
VKRRSLPGVCA++ACEVL DA+ F+LAVAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG SHWFWGHLR+SPAV EQLLD VLA+VEALS E V A+ V ELC ALR YCELV LGRPAA L R LQ A++AP +ALE++L S P XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX AGLYA LLLRG+RF+A+ +V VLG+ PPL G +G DAL+ALRDAALAASESE PR P XXXXXXXXXXXXXXXXXX S G+E + ++GV XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX GAGWFSEAALADCVKALP A A S LA EG G AA G A A GGGRW PVDCVEEALEQ
Sbjct: 157 VKRRSLPGVCAKVACEVLCDADRFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGLNSHWFWGHLRKSPAVTEQLLDTVLARVEALSRETVGRGG----------------GAAAAACGDRIAGSTTAPATTAPVGELCAALRAYCELVGLGRPAA--LTERHLQAAMSAPTDALEAMLLLPSAAPGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVANVVSEVLGSTT----PPLTGPDGMDALDALRDAALAASESE----------------FPRPPXXXXXXXXXXXXXXXXXXXXXSPPVSPRGGPKLASARRGSEAPVAAGAVGVVPXXXXXXXXXXXXXRRRRGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGWFSEAALADCVKALPPSCSVVAAVAAPCSALAPSVSEGVEGEPPAVATAAWGGAIVAAGGGGRWRLCPVDCVEEALEQ 746
BLAST of mRNA_H-canaliculatus_F_contig13055.2528.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.460e-18 Identity = 275/557 (49.37%), Postives = 293/557 (52.60%), Query Frame = 1
Query: 277 GVAGYGSHWFWGHLRRSPAVAEQLLDAVLAKVEALSHEIVATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASGVAVSELCTALRGYCELVSLGRPAAAALVARRLQTAVTAPLNALESLLYSHHPATVXXXXXXXXXXXXXXXXXGPSTTFAVERVAGGNTTIAIAGTGAAVWRLEEIVLCSILVSAGGVAVPDSGDXXXXXXXXXXXXXXXXXXXXSGSGDGAVGANAHEGARLCAAALRRLVVLCRSPAXXXXXXXXXXXXXXXXXXXXXXXXWLSCAGLYATLLLRGSRFDAMGELVGSVLGARANAPPPPLRGVEGTDALEALRDAALAASESEPEEXXXXTAXPPRQPPSPRAPLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAGGAEGGMPPLSLG-----------VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEAALADCVKALP------APGADSGSGLAAMEREGTAGTTVGAALGEATAWGG------GRWWFGPVDCVEEALEQ 1878
G AG SHWFWGHLR+SPAV EQLLD VLAKVEAL+ E V XXXXX A+ V EL ALR YCELV LGRPAA L R LQ A++AP +ALE++L XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX AGLYA LLLRG+RF+A+ ++V LG+ PPPL G +G DAL+ALRDAALAASESE PR P SPR XXXXXXXXXXX + G+E MPPLSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSE ALADCVKALP A GS LA EG G A GRW PVDCVEEALEQ
Sbjct: 458 GNAGLNSHWFWGHLRKSPAVTEQLLDTVLAKVEALARETVGXXXXXXXXXYSDRSAGSSTAP----------------ATTGTVGELSVALRAYCELVGLGRPAA--LTERHLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVAKVVSGALGST----PPPLTGPDGMDALDALRDAALAASESEF----------PRPPSSPRP------SNNTAXXXXXXXXXXXSPPVSPRGGPKLTAARRGSEV-MPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEPALADCVKALPPSCSVPVAAAAPGSALAPTVSEGVEGEPPAVATAXXXXXXXXXXXXXGRWRLCPVDCVEEALEQ 964 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13055.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13055.2528.1 >prot_H-canaliculatus_F_contig13055.2528.1 ID=prot_H-canaliculatus_F_contig13055.2528.1|Name=mRNA_H-canaliculatus_F_contig13055.2528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=626bp VKRRSLPGVCARMACEVLHDAEAFLLAVAASTASGEDDAHTAAAAAAAAAback to top mRNA from alignment at H-canaliculatus_F_contig13055:670..2838- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13055.2528.1 ID=mRNA_H-canaliculatus_F_contig13055.2528.1|Name=mRNA_H-canaliculatus_F_contig13055.2528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13055:670..2838- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13055:670..2838- >mRNA_H-canaliculatus_F_contig13055.2528.1 ID=mRNA_H-canaliculatus_F_contig13055.2528.1|Name=mRNA_H-canaliculatus_F_contig13055.2528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13055:670..2838- (Hapterophycus canaliculatus Oshoro5f female)back to top |