mRNA_H-canaliculatus_F_contig13054.2527.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13054.2527.1
Unique NamemRNA_H-canaliculatus_F_contig13054.2527.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13054.2527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13054contigH-canaliculatus_F_contig13054:1542..3222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_002040.1
Exons3
Model size325
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13054.2527.1prot_H-canaliculatus_F_contig13054.2527.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13054 1542..3222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.6266315-CDS-H-canaliculatus_F_contig13054:1541..16041622929040.6266315-CDS-H-canaliculatus_F_contig13054:1541..1604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 1542..1604 -
1696845657.6589973-CDS-H-canaliculatus_F_contig13054:1541..16041696845657.6589973-CDS-H-canaliculatus_F_contig13054:1541..1604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 1542..1604 -
1622929040.6389422-CDS-H-canaliculatus_F_contig13054:2579..27711622929040.6389422-CDS-H-canaliculatus_F_contig13054:2579..2771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 2580..2771 -
1696845657.6680858-CDS-H-canaliculatus_F_contig13054:2579..27711696845657.6680858-CDS-H-canaliculatus_F_contig13054:2579..2771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 2580..2771 -
1622929040.653744-CDS-H-canaliculatus_F_contig13054:3153..32221622929040.653744-CDS-H-canaliculatus_F_contig13054:3153..3222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 3154..3222 -
1696845657.6766438-CDS-H-canaliculatus_F_contig13054:3153..32221696845657.6766438-CDS-H-canaliculatus_F_contig13054:3153..3222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13054 3154..3222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13054.2527.1

>prot_H-canaliculatus_F_contig13054.2527.1 ID=prot_H-canaliculatus_F_contig13054.2527.1|Name=mRNA_H-canaliculatus_F_contig13054.2527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MGGYPIMGGSHAYGLPDFTAFQHGVPGGQNSQHMTPYHGYAHPPPGTAGA
AGGAGGAFKGMGGAFMGAFSTGMPPPNAAPGAAPSHQEQSQAAAYAAAYA
AAATTHAA
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mRNA from alignment at H-canaliculatus_F_contig13054:1542..3222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13054.2527.1 ID=mRNA_H-canaliculatus_F_contig13054.2527.1|Name=mRNA_H-canaliculatus_F_contig13054.2527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13054:1542..3222- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGATACCCCATCATGGGCGGGAGTCATGCCTACGGGCTCCCGGA
TTTCACGGCGTTCCAACACGTGAGGGGAGGTGGAGGGCAGCGAGACCTTG
TATCTCTGCAAGTATCTCTGCAAGTACGATGCGGGTTGGGTGTGTTTTTT
GTGGTCGTGTCCGTTTCTTGCGGGCGTGTAGGAAGTGAGAAGCTCCCTTG
TGCCGTGAAGGCGGACCAATGGCACGCGCGCAGGGGCGCCGTAGGTTGAA
GGCTGCACCTTGCTTCGACCACCCCTGCTCTCGGTGCAACCCCCGCCTCT
CAGAGGCCCACTCGGTTTAGCATAGTGATAGGATTGGGGGTGTTGTTGAT
GGTCAGACGGATACGATCTGGCCACAATGTCCGTATCTCTATCCGTACTG
GAAACCATCATCAACCAACCCCCCCCCCCCTCGATTGTGATTTGTATTCA
GGGGGTACCCGGGGGGCAGAATTCGCAGCACATGACGCCGTATCACGGCT
ACGCCCATCCTCCTCCCGGCACGGCGGGGGCGGCCGGAGGAGCAGGGGGA
GCTTTCAAGGGAATGGGCGGCGCCTTCATGGGGGCGTTCTCCACGGGGAT
GCCTCCTCCGAACGCGGCCCCCGGGGCTGCGCCCTCCCACCAGGTACTGG
CGTGCGGGGTTGTTTGTCTTCCTCGTTCTTGAGGGCCGTGTCCTTCTTGA
TTGGCCCTGTTGCTCTTGATTACCCTGTCGTTCTTGGTGAACCTTGTTGT
TCTTGATGACCCTGTCGTTCTTGATGGAACTTGTTGTTCTTGATGACCTC
GTCGTTCTTGATGGACCCTGTTGTTCTTGATGGACCCTGTCGTTCTTGAT
GACCCTGTTGTTCTTGATGACCCTGCCGTTCTCGATGGACCCTGTCGTTC
TTGATGGCCCTGCCGTTCTCCCTGACCGTATCGTTCTTGGCATTGATGTT
GCTGGTGTTGAGTATGTCGCATATTTGCGCCGGCTTTGTGTGAGGCTGGC
GCTTTTGACGCGGTGTGGGTGATATTGTTTTGTGCCCGCGGCTGCTTCTT
GTGGTTCTTGCGGTTATCTCTCGCCCGTGAAGCACACCCCCGCCACCCGT
GCATGCCCTCATTCCGCTGATGGAAACCCTCCACCGAGTGCGCTTACCGT
TCGTTTTGCGCGTGTGGGTTAAGCACGGCTCCGGCTCTCTCTGATCGATC
AACCGAGTCCATTCCCTCCTTTTTCCGGTCAGCTGGGCCCTCGAAGCCCC
AAGGATGGACAGAGGCGGAGCGAAATCCTCCTCCCAGTACCGCGCTTCGT
GCTTTCTCCTTTTTTAGCTCCCTCCCCAACCGCAGGCGACCCTCGCGCAA
ATGTTGTAGAGGGGAGGCAGCCCCCGCCAGCGCGCACGCTGCCTTGGTCT
ACTCCCACGCCCGTCCGCCTGCAGCATTCCACAAGGGAAACTAGCGCTAA
CGAGAGCTGCTCGGCACCCCCGTCAAAACCCTCCGCACCTCGGGACGCTG
CCCTAGCGCCGGCACCACGCCGCAAGGCCATCGCTGTGAGAGGCCACCCT
CGCAGTGTCGCCCTAACCTCCGCCGCCCGAACCCCGCCGACCTTTCCTTG
ACCCCGCCCGTCGCCTAGGAGCAGAGCCAAGCGGCCGCGTACGCCGCCGC
CTATGCCGCGGCGGCCACGACTCACGCGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13054:1542..3222-

>mRNA_H-canaliculatus_F_contig13054.2527.1 ID=mRNA_H-canaliculatus_F_contig13054.2527.1|Name=mRNA_H-canaliculatus_F_contig13054.2527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13054:1542..3222- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGATACCCCATCATGGGCGGGAGTCATGCCTACGGGCTCCCGGA
TTTCACGGCGTTCCAACACATGGGCGGATACCCCATCATGGGCGGGAGTC
ATGCCTACGGGCTCCCGGATTTCACGGCGTTCCAACACGGGGTACCCGGG
GGGCAGAATTCGCAGCACATGACGCCGTATCACGGCTACGCCCATCCTCC
TCCCGGCACGGCGGGGGCGGCCGGAGGAGCAGGGGGAGCTTTCAAGGGAA
TGGGCGGCGCCTTCATGGGGGCGTTCTCCACGGGGATGCCTCCTCCGAAC
GCGGCCCCCGGGGCTGCGCCCTCCCACCAGGGGGTACCCGGGGGGCAGAA
TTCGCAGCACATGACGCCGTATCACGGCTACGCCCATCCTCCTCCCGGCA
CGGCGGGGGCGGCCGGAGGAGCAGGGGGAGCTTTCAAGGGAATGGGCGGC
GCCTTCATGGGGGCGTTCTCCACGGGGATGCCTCCTCCGAACGCGGCCCC
CGGGGCTGCGCCCTCCCACCAGGAGCAGAGCCAAGCGGCCGCGTACGCCG
CCGCCTATGCCGCGGCGGCCACGACTCACGCGGCCGAGCAGAGCCAAGCG
GCCGCGTACGCCGCCGCCTATGCCGCGGCGGCCACGACTCACGCGGCC
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