mRNA_H-canaliculatus_F_contig13052.2526.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13052.2526.1
Unique NamemRNA_H-canaliculatus_F_contig13052.2526.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13052.2526.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 6.090e-7
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 GGVLLSLEDASAPVATDMVHLDPSWLIEL 88
            GGVLLSL D SAPVA+DM+HLDPSWLIEL
Sbjct:  599 GGVLLSLADDSAPVASDMLHLDPSWLIEL 627
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13052.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKS5_ECTSI6.090e-786.21LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13052contigH-canaliculatus_F_contig13052:939..1456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.4823434-CDS-H-canaliculatus_F_contig13052:938..10261622929040.4823434-CDS-H-canaliculatus_F_contig13052:938..1026Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 939..1026 +
1696845657.6057057-CDS-H-canaliculatus_F_contig13052:938..10261696845657.6057057-CDS-H-canaliculatus_F_contig13052:938..1026Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 939..1026 +
1622929040.501022-CDS-H-canaliculatus_F_contig13052:1369..14551622929040.501022-CDS-H-canaliculatus_F_contig13052:1369..1455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 1370..1455 +
1696845657.6233106-CDS-H-canaliculatus_F_contig13052:1369..14551696845657.6233106-CDS-H-canaliculatus_F_contig13052:1369..1455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 1370..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13052.2526.1prot_H-canaliculatus_F_contig13052.2526.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13052 939..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13052.2526.1

>prot_H-canaliculatus_F_contig13052.2526.1 ID=prot_H-canaliculatus_F_contig13052.2526.1|Name=mRNA_H-canaliculatus_F_contig13052.2526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
GRGAVVAGGRVGTCGNRHGSPGSVVAHRAARTASLVVSTGISSASCGCTG
RSERKIRR
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mRNA from alignment at H-canaliculatus_F_contig13052:939..1456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13052.2526.1 ID=mRNA_H-canaliculatus_F_contig13052.2526.1|Name=mRNA_H-canaliculatus_F_contig13052.2526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13052:939..1456+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCGGGGTGCTGTTGTCGCTGGAGGACGCGTCGGCACCTGTGGCAACCG
ACATGGTTCACCTGGATCCGTCGTGGCTCATCGAGCTGGTGAGGCGCTTG
TCAGATCACAACCTTGTGAGTGAGGACAAGAGGAAACGTGGAACTGTGTA
TGAGGGGCTCCGGTCGTACGCCAAGAAGGTTGAGGGCGTCACAATGGCGG
ACCTCGTCGACATGCACAGGTGGGATGATTTCAATTGACGTGATTTTATT
CTTGAATGACCCACGGCAGTCTTGAAGTCGTGGTGTATTTGCTCTTGAAG
CATTGCCTCAGAGCTTCGTTTTGGTCTGTCCTGACTCCAGTTTCTGCCAA
ATTTTTAAGTGCGAACGCACGCGGCTGACTACCGTTAACGCTTCAAACAT
GCCTTGCTCTCATCGTGACCCTATTGAACAGCGCGTACTGCAAGTCTGGT
CGTCTCAACCGGGATTTCCTCCGCTTCCTGTGGATGCACCGGAAGATCGG
AGCGAAAGATTCGCCGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13052:939..1456+

>mRNA_H-canaliculatus_F_contig13052.2526.1 ID=mRNA_H-canaliculatus_F_contig13052.2526.1|Name=mRNA_H-canaliculatus_F_contig13052.2526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13052:939..1456+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCGGGGTGCTGTTGTCGCTGGAGGACGCGTCGGCACCTGTGGCAACCG
ACATGGTTCACCTGGATCCGTCGTGGCTCATCGAGCTGGGGCGGGGTGCT
GTTGTCGCTGGAGGACGCGTCGGCACCTGTGGCAACCGACATGGTTCACC
TGGATCCGTCGTGGCTCATCGAGCTGCGCGTACTGCAAGTCTGGTCGTCT
CAACCGGGATTTCCTCCGCTTCCTGTGGATGCACCGGAAGATCGGAGCGA
AAGATTCGCCGACGCGTACTGCAAGTCTGGTCGTCTCAACCGGGATTTCC
TCCGCTTCCTGTGGATGCACCGGAAGATCGGAGCGAAAGATTCGCCGA
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