mRNA_H-canaliculatus_F_contig13045.2522.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13045.2522.1
Unique NamemRNA_H-canaliculatus_F_contig13045.2522.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13045.2522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13045contigH-canaliculatus_F_contig13045:105..1860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.7684703-CDS-H-canaliculatus_F_contig13045:104..2451622929039.7684703-CDS-H-canaliculatus_F_contig13045:104..245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13045 105..245 +
1696845657.308093-CDS-H-canaliculatus_F_contig13045:104..2451696845657.308093-CDS-H-canaliculatus_F_contig13045:104..245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13045 105..245 +
1622929039.806523-CDS-H-canaliculatus_F_contig13045:1774..18581622929039.806523-CDS-H-canaliculatus_F_contig13045:1774..1858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13045 1775..1858 +
1696845657.3176136-CDS-H-canaliculatus_F_contig13045:1774..18581696845657.3176136-CDS-H-canaliculatus_F_contig13045:1774..1858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13045 1775..1858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13045.2522.1prot_H-canaliculatus_F_contig13045.2522.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13045 105..1858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13045.2522.1

>prot_H-canaliculatus_F_contig13045.2522.1 ID=prot_H-canaliculatus_F_contig13045.2522.1|Name=mRNA_H-canaliculatus_F_contig13045.2522.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
QTTTTKSRVNDIPTTAAAFVKAVKDEKWAKALKLQVGMELLEDCDLKRIS
AATCPPCGLLPTLSTASWRSTPSWR
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mRNA from alignment at H-canaliculatus_F_contig13045:105..1860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13045.2522.1 ID=mRNA_H-canaliculatus_F_contig13045.2522.1|Name=mRNA_H-canaliculatus_F_contig13045.2522.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13045:105..1860+ (Hapterophycus canaliculatus Oshoro5f female)
CAGACAACAACCACCAAGTCCCGTGTGAACGACATACCAACCACGGCGGC
GGCCTTCGTGAAGGCTGTGAAGGACGAGAAGTGGGCAAAGGCCCTGAAGC
TGCAAGTTGGAATGGAGCTCCTTGAGGACTGTGACCTCAAGGTCGGCGAG
TACTTGTGGGGGTGGGCGCTGTACTATCTATGAATCGTTTTCTTTCCCGT
GAAATGGAGTCATTGGGGGGAACGTTGTTTACGCCACACATACCCTCGAC
AGAACTTGGCCCAGCCCGTGCCATGCAGTTCTCGTGAACGCCACCCCCTC
ACGGTGGAGCCCCCCTGGTGGACACGTCGAAGCTCTTGCTCTTTTTGGTG
TCGGCCCTCCACCCCGGAGATCACCAAAAGGCGTTGTTATTCCCGGCTAT
TTTTACGGTCGCCCCGCGGGGCGTTCGTATCGTTATTGTTGCTACTTCAA
CTCCCGTTGCTGTCGCTGTTGCTGTTGCTGCCATTGCCGTCCACTGAATG
TTATCCTGAGGAGTAAAGTGGCAGGCACTGTAGAGCAGCGTAGTTAGATT
GGTACGACAAACAAACGATTAGCCTGCCCATGCCAAGCTTGCAGCCCCCT
ACACGACGCTTGTAACGTGGGCGCGAAGCAACAAAACACGAAACAAATGA
ACGTGCCCTGAGGGCTTTTTGCCCAAGGGCCTTCGGCTCCGGCGCGTTCC
TCGAAAGGACATCCCAATTTTTCGGTCAGAACCCCGAGGTTGTCGCTTTC
ACAGAAAAAACAGTTTGGCCCGCAACGCGTTCACGGAGGATGTACGCGGA
ATACCATGTCCTCGAGGACAACACCAATCCATCCAGCTCCTCTCCCTGTG
TTCTCTTCTCTTTGCATCCCCTGTGATTTGCTTCGAACCCCAGCCGTCGT
TTGTACACAAAAGTTCCGCAGCCCATCAGGTATATCTGTACCAAGTAACA
ATCTCCCCTCGTTTTGGACCGAAATATCGCCGAGACTTCGACATTCCCTC
CCGAAGGAATAATGGTTTATAGGTTTTGTCGATAAGTGGAGTGTGCTGTC
CTGGGGTAGCCGCAGATTTTTTCAGTTATCGGTGGACCCACCACCGCCAT
GAAATCCATGCGGTTTCTTCTTGCAGTTCCATCGCACGGCTGGAGCACCC
TGCCCCCGTGGTTAGGCGAGGACCGCCAAGCCCTGCGCCGGGCAACACCA
TTTCGACGATTTCGATACCAGGCTCCTCCCCCGAAATGGTTCATTTCGAT
GCACCCTACCCGCGCCGATATCCAGCTCCCGCCCTACCTGGTCGCCGTGT
AAGGGCCGCAAAACCCTACCCTCGCACCATCTCATTCCTTTCAGTAAAAA
TTAAATATTGCCAGGATCCCCCACCCCCACTCCACCCCCCGCCAAAACTG
CATTGTCTTTGCTGATCGTATGGTGAGACCGTGTGTTGTCAGTTACGCGA
ACGGCGCGCTTTTCAACATGACGTTTCATCTCTTACTTGATTGAACGCTC
GCTCTAACAGGCGCTTCCTCTTGACGGCTTTGGTTCAAACCCCATCGTGC
CAAAACTACGGACATTGCACCACATTAAAGACATTGTTTGTGCCAATCAG
CCTCGCCCTCTCTGGTATGCCAGGCTATCTTAAACCTCCCGCGCCTTTCT
GTTTGCTTCCATTGCGCCAGCGGATCTCGGCAGCAACCTGTCCGCCGTGT
GGTCTACTGCCCACACTCTCTACCGCGTCATGGCGGTCGACGCCCTCCTG
GCGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13045:105..1860+

>mRNA_H-canaliculatus_F_contig13045.2522.1 ID=mRNA_H-canaliculatus_F_contig13045.2522.1|Name=mRNA_H-canaliculatus_F_contig13045.2522.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13045:105..1860+ (Hapterophycus canaliculatus Oshoro5f female)
CAGACAACAACCACCAAGTCCCGTGTGAACGACATACCAACCACGGCGGC
GGCCTTCGTGAAGGCTGTGAAGGACGAGAAGTGGGCAAAGGCCCTGAAGC
TGCAAGTTGGAATGGAGCTCCTTGAGGACTGTGACCTCAAGCAGACAACA
ACCACCAAGTCCCGTGTGAACGACATACCAACCACGGCGGCGGCCTTCGT
GAAGGCTGTGAAGGACGAGAAGTGGGCAAAGGCCCTGAAGCTGCAAGTTG
GAATGGAGCTCCTTGAGGACTGTGACCTCAAGCGGATCTCGGCAGCAACC
TGTCCGCCGTGTGGTCTACTGCCCACACTCTCTACCGCGTCATGGCGGTC
GACGCCCTCCTGGCGGCGGATCTCGGCAGCAACCTGTCCGCCGTGTGGTC
TACTGCCCACACTCTCTACCGCGTCATGGCGGTCGACGCCCTCCTGGCGG
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