mRNA_H-canaliculatus_F_contig13044.2521.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13044.2521.1
Unique NamemRNA_H-canaliculatus_F_contig13044.2521.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13044.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13044contigH-canaliculatus_F_contig13044:2430..3331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13044.2521.1prot_H-canaliculatus_F_contig13044.2521.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13044 3026..3331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.6774402-UTR-H-canaliculatus_F_contig13044:2429..24871622929039.6774402-UTR-H-canaliculatus_F_contig13044:2429..2487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13044 2430..2487 +
1696845657.2811687-UTR-H-canaliculatus_F_contig13044:2429..24871696845657.2811687-UTR-H-canaliculatus_F_contig13044:2429..2487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13044 2430..2487 +
1622929039.6887214-UTR-H-canaliculatus_F_contig13044:3008..30251622929039.6887214-UTR-H-canaliculatus_F_contig13044:3008..3025Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13044 3009..3025 +
1696845657.2908719-UTR-H-canaliculatus_F_contig13044:3008..30251696845657.2908719-UTR-H-canaliculatus_F_contig13044:3008..3025Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13044 3009..3025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.704098-CDS-H-canaliculatus_F_contig13044:3025..33311622929039.704098-CDS-H-canaliculatus_F_contig13044:3025..3331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13044 3026..3331 +
1696845657.299372-CDS-H-canaliculatus_F_contig13044:3025..33311696845657.299372-CDS-H-canaliculatus_F_contig13044:3025..3331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13044 3026..3331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13044.2521.1

>prot_H-canaliculatus_F_contig13044.2521.1 ID=prot_H-canaliculatus_F_contig13044.2521.1|Name=mRNA_H-canaliculatus_F_contig13044.2521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MECRLCLSGICVKIHQCRRSLQEQRCPERWIAVDGDGFARHEPDACVGHG
GAPRGTMRGGFLVRRARIHADNREEQPYKPDKPNQTVRPGFPHHDRCSGK
QV
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mRNA from alignment at H-canaliculatus_F_contig13044:2430..3331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13044.2521.1 ID=mRNA_H-canaliculatus_F_contig13044.2521.1|Name=mRNA_H-canaliculatus_F_contig13044.2521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=902bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13044:2430..3331+ (Hapterophycus canaliculatus Oshoro5f female)
GACGATATGGCCTGAATAGCCGCTCGCACTGGTGCTGCGGCTAGCATACT
GCTAGCTGGTAAGACCACGTCCCTGCTGAAGCAGAGAACACAGCATTTTA
CGACGCTGACTTACAGTATAGGCGGAGACATGCGCGTGTGACAACTGATG
CCACAGCGTGCCGGTTTGCAAGGTCGACATCTCGACCCGAGGTACAGCAG
TAGAAACTGCGTGTGTCCACGCGGGCGGCGTTGGGCGTCGAGAATGTACC
GCCGATAGCTTGTGCGAGAACCCGGACTTGTGGCAATCGGTATCGGAGAA
CATCCTTGTTGTCGAGTTGTCTAGTTGTCGATCTTCGAAAGTTCGGTGAA
ACGGCCAATCTTGTACGGTTATCCTCACACTTTACATAAGCAGTGATTGA
CGGAAGCAGCTTCTGGCAGCAGTCTCATTTGCTCACCGTTCAATCGGGAC
CATGGTCATGGTGTATCGCCATGCCGCGCGCACAAGATGACCTCTGCGGG
TTCTTCAAAACCCGGGCCCTGTGTGACACGCTGTGCTCGAGATGGCTTTT
ACGCTTTCACCCCTGTCCGGCGAAACGAGGCGGTCCGTGGGTGAAGATGG
AGTGCCGCTTATGCTTGAGTGGTATTTGTGTGAAAATTCACCAATGCCGT
AGAAGTCTGCAGGAGCAGAGGTGTCCCGAACGATGGATAGCCGTGGATGG
CGATGGCTTCGCTCGCCATGAACCGGATGCATGCGTAGGACACGGCGGGG
CACCCCGGGGCACGATGAGAGGCGGTTTTTTGGTACGCAGGGCGAGGATA
CATGCGGACAACAGGGAAGAGCAGCCCTACAAACCAGACAAACCGAACCA
GACAGTGCGTCCAGGATTTCCACATCACGATCGCTGCTCTGGAAAACAGG
TG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13044:2430..3331+

>mRNA_H-canaliculatus_F_contig13044.2521.1 ID=mRNA_H-canaliculatus_F_contig13044.2521.1|Name=mRNA_H-canaliculatus_F_contig13044.2521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13044:2430..3331+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTGCCGCTTATGCTTGAGTGGTATTTGTGTGAAAATTCACCAATG
CCGTAGAAGTCTGCAGGAGCAGAGGTGTCCCGAACGATGGATAGCCGTGG
ATGGCGATGGCTTCGCTCGCCATGAACCGGATGCATGCGTAGGACACGGC
GGGGCACCCCGGGGCACGATGAGAGGCGGTTTTTTGGTACGCAGGGCGAG
GATACATGCGGACAACAGGGAAGAGCAGCCCTACAAACCAGACAAACCGA
ACCAGACAGTGCGTCCAGGATTTCCACATCACGATCGCTGCTCTGGAAAA
CAGGTGATGGAGTGCCGCTTATGCTTGAGTGGTATTTGTGTGAAAATTCA
CCAATGCCGTAGAAGTCTGCAGGAGCAGAGGTGTCCCGAACGATGGATAG
CCGTGGATGGCGATGGCTTCGCTCGCCATGAACCGGATGCATGCGTAGGA
CACGGCGGGGCACCCCGGGGCACGATGAGAGGCGGTTTTTTGGTACGCAG
GGCGAGGATACATGCGGACAACAGGGAAGAGCAGCCCTACAAACCAGACA
AACCGAACCAGACAGTGCGTCCAGGATTTCCACATCACGATCGCTGCTCT
GGAAAACAGGTG
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