prot_H-canaliculatus_F_contig13042.2520.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig13042.2520.1
Unique Name	prot_H-canaliculatus_F_contig13042.2520.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	198

Homology

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.450e-123
Identity = 171/197 (86.80%), Postives = 181/197 (91.88%), Query Frame = 0

Query:    1 MFGSFGRKAKKVLPPPPPVKTVPVNAVEGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQGGDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGFA 197
            M G FGRK+K   P  PP + V  NAV+GLVG DIETGG FDPLGFG+NCPP+QMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGN++QEE++ GGDLGFDPLGLKPSN EAW+RVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAG A
Sbjct:   37 MIGGFGRKSKPA-PKAPPARPVSTNAVDGLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGLA 232

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.900e-55
Identity = 93/164 (56.71%), Postives = 115/164 (70.12%), Query Frame = 0

Query:   28 EGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQG-GDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKV 190
            EGLVG D+E    +DPLGF  N  P+ + WYRAAELKHGRV MLAA G+I Q + H  DP  +F +S   W A+QQVY +RP A  QI+LAIFA E  G  +Q +  Q  GDL +DPL LKPS+ E W++VQLRELKNGRLAM AI G  VQE++TG G +E++
Sbjct:   45 EGLVGSDLELA-TWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQI 205

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 182 bits (462), Expect = 9.540e-55
Identity = 91/167 (54.49%), Postives = 116/167 (69.46%), Query Frame = 0

Query:   28 EGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQG-GDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSL 193
            +GL+G D+E    FDPLGF  N   E ++WYRAAELKHGRVCMLAA GQ+ Q F H  DPSG+FD + S++GA  +V  +RP+A +QI+LAIFAVEV G + Q +  Q  GDL FDP  ++  + E W+  QLRELKNGRLAM  I  M+VQE I+G GV+ +   L
Sbjct:   51 QGLIGSDLEWP-EFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQWQGL 216

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 175 bits (443), Expect = 6.910e-52
Identity = 92/165 (55.76%), Postives = 114/165 (69.09%), Query Frame = 0

Query:   25 NAVEGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQG-GDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLE 188
            ++ EGL+G D+E    FDPLGF  N  P  ++WYRAAELKHGRV MLAA GQ+ Q F H  DP  +F +S   W A+ +V  +RP A +QI LAIFA E  G   Q +  Q  GDLG+DPL L+ SN+E ++R QLRELKNGRLAM AI  MIVQE++TG GV+E
Sbjct:   40 SSAEGLIGSDLELP-EFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.630e-50
Identity = 92/166 (55.42%), Postives = 112/166 (67.47%), Query Frame = 0

Query:   25 NAVEGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQG-GDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEK 189
            ++ +GL G DIE    FDPLGF  N  PE + WYRAAELKHGRV MLAA GQI QHF    D SG+F        A+ +V  +RP A +QI LAIFAVE  G   Q +  Q  GDLG+DPL LK  + E + +VQ RELKNGRLAM AI GM+VQE++TG+GV+E+
Sbjct:   39 SSAQGLAGSDIEFP-EFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 203

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE)

HSP 1 Score: 167 bits (424), Expect = 3.920e-49
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 0

Query:   25 NAVEGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESD-QGGDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVD 191
            NAV G+ G D E    FDP+GF +N P E ++WYRAAELKHGRVCMLAA G I    TH   P   F+  GS  GA+ ++ E+RP+A LQI+LAIFAVE  G + Q E   +GGDLGFDPLGLKPS+ E  +  QLRE+KNGRLAM AILG   QE++T   +++  D
Sbjct:   45 NAV-GMPGTDFELPD-FDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVAGITHL--PDTCFEGKGSL-GAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAILGQWAQEYVTNRPIIDFDD 207

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 149 bits (376), Expect = 1.110e-42
Identity = 80/133 (60.15%), Postives = 95/133 (71.43%), Query Frame = 0

Query:   57 WYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQG-GDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLE 188
            WYRAAELKHGRV MLAA GQI Q F    DP  +F +  + W AM +VYE+RP A +QI+LA FA E  G   Q    Q  GDLGFDPL LK ++ E ++RVQLRELKNGRLAM+AI  MIVQE++TG GV+E
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDP--VFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIE 131

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.480e-42
Identity = 80/167 (47.90%), Postives = 106/167 (63.47%), Query Frame = 0

Query:   26 AVEGLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQGGDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDS 192
            + +GLVG  +ETGG +DP         E + WYRAAELKHGRVCMLAA G + Q +  W  P  +F  +  A  A+ Q+Y +RP A  QI+LAI A+EV G+  Q+ +  G DL +DPLGL P + E    +QL+ELKNGRLAM A  G  +QE +TG G +E++ S
Sbjct:   41 SADGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGY--WQLPDPVFSNT-KAVDAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKYTAPG-DLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQITS 203

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 150 bits (379), Expect = 3.420e-42
Identity = 76/162 (46.91%), Postives = 111/162 (68.52%), Query Frame = 0

Query:   29 GLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQGGDLGFDPLGLKPSNDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKV 190
            GLVG DI+    FDPLG  +    E ++WYRAAELKHGRV MLAA G + Q+   +  P   F ++     A+ +++ +RP A +QI+ AI A+EV GN+ Q +++ GGDL +DPLG+KP++ E + ++QLRELKNGRLAM ++LGM  QE +T  G ++++
Sbjct:   56 GLVGNDIDAPN-FDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNI--YQLPDSPFQEANPI-NAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQI 213

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BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Match: A0A0G4FGI4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGI4_9ALVE)

HSP 1 Score: 144 bits (362), Expect = 8.810e-40
Identity = 80/165 (48.48%), Postives = 105/165 (63.64%), Query Frame = 0

Query:   29 GLVGGDIETGGAFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQGGDLGFDPLGLKPS-NDEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDS 192
            GL G  +E    FDP  +      E ++WYRAAE KHGR+CMLA  G I Q F   N P   F ++ S +G + QV+ +RP A +QI+LAI AVEV G   QE++ +GGDL +DPLGL+ + +DE +  +Q RELKNGRLAM + LG+  QE +TG GV E   S
Sbjct:   49 GLSGNTVEIPN-FDPANYLEKADGETLKWYRAAEQKHGRICMLACLGAIAQGFV--NLPDSPF-QNHSCFGGLAQVWAERPLAIIQILLAISAVEVLGANVQEQTAEGGDLKWDPLGLQGTFSDEEFAAMQTRELKNGRLAMISFLGIAAQEAVTGKGVFESFTS 209

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig13042.2520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKC3_9PHAE	1.450e-123	86.80	LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A835YT25_9STRA	4.900e-55	56.71	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A0G4GYX1_VITBC	9.540e-55	54.49	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
FCP_CHAMQ	6.910e-52	55.76	Fucoxanthin-chlorophyll a-c binding protein, chlor...	[more]
W7TCK1_9STRA	1.630e-50	55.42	Chloroplast light harvesting protein isoform 4 n=2...	[more]
A0A0G4GRR2_9ALVE	3.920e-49	55.36	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A7S4UG07_9DINO	1.110e-42	60.15	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]
A0A835Z156_9STRA	1.480e-42	47.90	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4F0S3_VITBC	3.420e-42	46.91	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4FGI4_9ALVE	8.810e-40	48.48	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 18..195 e-value: 1.4E-38 score: 134.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 36..179 e-value: 3.1E-36 score: 125.3
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 29..183
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 31..189
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 29..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig13042	contig	H-canaliculatus_F_contig13042:46..2046 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig13042.2520.1	mRNA_H-canaliculatus_F_contig13042.2520.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig13042 16..3294 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig13042.2520.1 ID=prot_H-canaliculatus_F_contig13042.2520.1|Name=mRNA_H-canaliculatus_F_contig13042.2520.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=198bp
MFGSFGRKAKKVLPPPPPVKTVPVNAVEGLVGGDIETGGAFDPLGFGRNC
PPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGA
MQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESDQGGDLGFDPLGLKPSN
DEAWDRVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGFA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf