mRNA_H-canaliculatus_F_contig13039.2517.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13039.2517.1
Unique NamemRNA_H-canaliculatus_F_contig13039.2517.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 8.070e-92
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDR ILNPAGLAGVLTVLHLCMDLKNTLLGK HY+LFYITAAMNPRMLMTVD+DLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAE+
Sbjct:  794 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRGILNPAGLAGVLTVLHLCMDLKNTLLGKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEL 948
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.540e-75
Identity = 120/155 (77.42%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            ALGL++AGTNNSRVAQLLRQLSEFY+REA  LFVTRIAQGLNH+GKGLM+LHPFHSDRL+L+P  L G+L V+  C+D KNT+L KHHY+L+++  AM PRMLM VD D+KPL V VRVGQAVETVGQAG+PKTITGFQTHTTPVLLGVRDRAE+
Sbjct:  742 ALGLIAAGTNNSRVAQLLRQLSEFYSREAGPLFVTRIAQGLNHLGKGLMTLHPFHSDRLVLSPVALGGLLAVVFACLDAKNTILDKHHYILYFLACAMQPRMLMAVDEDVKPLSVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVRDRAEL 896
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A7S0FSP1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSP1_9STRA)

HSP 1 Score: 229 bits (583), Expect = 3.660e-74
Identity = 109/158 (68.99%), Postives = 137/158 (86.71%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEVRQE 474
            A+G+VSAGTNNSRVA LLRQL EFY++EA H+F  RIAQG+ HMGKGL+SL+P HSDRL++NPA L G+L ++H C+DLK+TLL K HY+L+Y+T AMNPR+++TV+ D++  PV VRVGQAVETVGQAGKPKTITGFQTHTTPVL+G ++RAE+  E
Sbjct:    7 AMGIVSAGTNNSRVAGLLRQLGEFYSKEAGHMFCVRIAQGMLHMGKGLISLNPVHSDRLLMNPAALGGMLVLIHSCLDLKSTLLDKTHYLLYYLTCAMNPRVIITVNDDMEWRPVTVRVGQAVETVGQAGKPKTITGFQTHTTPVLIGSKERAELGTE 164
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: W7TKW5_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW5_9STRA)

HSP 1 Score: 236 bits (601), Expect = 8.560e-70
Identity = 113/155 (72.90%), Postives = 134/155 (86.45%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            ALG++  GTNNSR+A LLRQL+EFY+REASHLFV R+AQG  H GKGL+S+ PFHSDRL+ +  GLAG+LT+LH  +D+KNT+L KHHY+LF    AMNPRML+T+D DL PLPV VRVGQAVETVGQAG+PKTITGFQTHTTPVLLGV+DRAE+
Sbjct:  739 ALGVIGCGTNNSRIAGLLRQLAEFYSREASHLFVVRVAQGFLHAGKGLVSMTPFHSDRLLASGVGLAGILTLLHAALDMKNTVLDKHHYLLFSALVAMNPRMLITLDEDLNPLPVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVKDRAEL 893
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A448ZR97_9STRA (Uncharacterized protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZR97_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.300e-69
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 1 
Query:    4 LGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEVRQE 474
            +G+VSAGTNNSRVA LLRQLSEFY++EASH+F  RIAQGL HMGKGLM++HPFH+DR++LN   LAGVL +LH C+DLKNTLL K H++L+Y+T +MNPRML+TV+ D+   PV VRVGQAVETVGQAGKPK ITGFQTHTTPVLLGV DRAE+  E
Sbjct:  748 MGVVSAGTNNSRVAGLLRQLSEFYSKEASHVFCVRIAQGLLHMGKGLMTMHPFHADRMLLNGPTLAGVLVLLHSCLDLKNTLLDKSHFLLYYLTCSMNPRMLITVNEDMSWRPVTVRVGQAVETVGQAGKPKRITGFQTHTTPVLLGVTDRAELGTE 904
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A7R9Z9Y4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9Y4_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.170e-68
Identity = 110/158 (69.62%), Postives = 134/158 (84.81%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEVRQE 474
            A+G+VSAGTNNSRVA LLRQLSEFY +EA H+F  RIAQGL HMGKGL++L+PFHSDR++++   L G+L ++H CMDLKNTLL K HY+L+Y+T AM+PRML+TV+ D+    V VRVGQAVETVGQAGKPKTITGFQTHTTPVLLG ++RAE+  E
Sbjct:  343 AMGIVSAGTNNSRVAGLLRQLSEFYNKEAGHIFCVRIAQGLLHMGKGLITLNPFHSDRMLMSGPALGGLLVLIHSCMDLKNTLLDKSHYLLYYLTCAMSPRMLITVNEDMSWRSVTVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGAQERAELGTE 500
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A446W583_TRITD (RPN1_C domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446W583_TRITD)

HSP 1 Score: 223 bits (567), Expect = 1.210e-68
Identity = 103/155 (66.45%), Postives = 131/155 (84.52%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            +LGL+ AGTNN+R+A +LR LS +Y +EA+HLF  RIAQGL H+GKGL++L P+HSDR +L+P  L G++TVLH C+D+K+T+LGK+HY+L+ I  AM PRML+TVD DLKPLPV VRVGQAV+ VGQAG+PKTITGFQTHTTPVLL   +RAE+
Sbjct:  249 SLGLIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPMALGGIVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLPVPVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAAGERAEL 403
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A446W593_TRITD (RPN1_C domain-containing protein n=10 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446W593_TRITD)

HSP 1 Score: 223 bits (567), Expect = 1.340e-68
Identity = 103/155 (66.45%), Postives = 131/155 (84.52%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            +LGL+ AGTNN+R+A +LR LS +Y +EA+HLF  RIAQGL H+GKGL++L P+HSDR +L+P  L G++TVLH C+D+K+T+LGK+HY+L+ I  AM PRML+TVD DLKPLPV VRVGQAV+ VGQAG+PKTITGFQTHTTPVLL   +RAE+
Sbjct:  253 SLGLIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPMALGGIVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLPVPVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAAGERAEL 407
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A0P1AZB9_PLAHL (26s proteasome non-atpase regulatory subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AZB9_PLAHL)

HSP 1 Score: 231 bits (590), Expect = 2.210e-68
Identity = 112/158 (70.89%), Postives = 137/158 (86.71%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEVRQE 474
            ALGL++AGTNNSRVA LLRQLSEFY+REA+HLFV RIAQGL HMGKGLM+LHPFHSDRLI++   ++G+LT+LH  +D+++T+L   HY+L+ I  AM PRML+T+D +L PLPV+VRVGQAVE VGQAG+PK+ITGFQTHTTPVLL VRDRAE+  E
Sbjct:  715 ALGLIAAGTNNSRVAGLLRQLSEFYSREANHLFVVRIAQGLLHMGKGLMTLHPFHSDRLIMSRVAVSGLLTILHAALDMEHTILDTSHYILYCIATAMQPRMLITLDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVRDRAELATE 872
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Match: A0A3R7B611_9STRA (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B611_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.940e-68
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 1 
Query:    1 ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMSLHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNPRMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEV 465
            ALGLVSAGTNNSRVA LLRQLSEFY+REA+HLFV RIAQG  HMGKGL++LHPFHSDRLIL+   L+G+L VLH  +D++ T+    HY L+ I  AM PRML+TVD    PLPV+VRVGQAVE VGQAG+PK+ITGFQTH TPVLL V+DRAE+
Sbjct:  216 ALGLVSAGTNNSRVAGLLRQLSEFYSREANHLFVVRIAQGFLHMGKGLITLHPFHSDRLILSRVALSGLLAVLHAALDMEKTIFDNSHYFLYCIVTAMQPRMLITVDEQGNPLPVSVRVGQAVEVVGQAGRPKSITGFQTHNTPVLLNVKDRAEL 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13039.2517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE8.070e-9296.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CK10_9STRA4.540e-7577.4226S proteasome non-ATPase regulatory subunit 2 n=1... [more]
A0A7S0FSP1_9STRA3.660e-7468.99Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
W7TKW5_9STRA8.560e-7072.90Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A448ZR97_9STRA2.300e-6973.25Uncharacterized protein n=2 Tax=Bacillariaceae Tax... [more]
A0A7R9Z9Y4_9STRA1.170e-6869.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A446W583_TRITD1.210e-6866.45RPN1_C domain-containing protein n=2 Tax=Triticum ... [more]
A0A446W593_TRITD1.340e-6866.45RPN1_C domain-containing protein n=10 Tax=Triticum... [more]
A0A0P1AZB9_PLAHL2.210e-6870.8926s proteasome non-atpase regulatory subunit 2 n=2... [more]
A0A3R7B611_9STRA2.940e-6870.97V-SNARE coiled-coil homology domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13039contigH-canaliculatus_F_contig13039:1166..2620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue3.6e-58
Seed eggNOG ortholog164328.Phyra71570
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Proteasome/cyclosome repeat
EggNOG OGs3QCSK@4776,COG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13039.2517.1prot_H-canaliculatus_F_contig13039.2517.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13039 1166..2620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929037.7567158-CDS-H-canaliculatus_F_contig13039:1165..13241622929037.7567158-CDS-H-canaliculatus_F_contig13039:1165..1324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 1166..1324 -
1696845656.7084029-CDS-H-canaliculatus_F_contig13039:1165..13241696845656.7084029-CDS-H-canaliculatus_F_contig13039:1165..1324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 1166..1324 -
1622929037.7696507-CDS-H-canaliculatus_F_contig13039:1768..19451622929037.7696507-CDS-H-canaliculatus_F_contig13039:1768..1945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 1769..1945 -
1696845656.7189887-CDS-H-canaliculatus_F_contig13039:1768..19451696845656.7189887-CDS-H-canaliculatus_F_contig13039:1768..1945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 1769..1945 -
1622929037.7806537-CDS-H-canaliculatus_F_contig13039:2482..26201622929037.7806537-CDS-H-canaliculatus_F_contig13039:2482..2620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 2483..2620 -
1696845656.729092-CDS-H-canaliculatus_F_contig13039:2482..26201696845656.729092-CDS-H-canaliculatus_F_contig13039:2482..2620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13039 2483..2620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13039.2517.1

>prot_H-canaliculatus_F_contig13039.2517.1 ID=prot_H-canaliculatus_F_contig13039.2517.1|Name=mRNA_H-canaliculatus_F_contig13039.2517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
ALGLVSAGTNNSRVAQLLRQLSEFYAREASHLFVTRIAQGLNHMGKGLMS
LHPFHSDRLILNPAGLAGVLTVLHLCMDLKNTLLGKHHYVLFYITAAMNP
RMLMTVDADLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVR
DRAEVRQE
back to top

mRNA from alignment at H-canaliculatus_F_contig13039:1166..2620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13039.2517.1 ID=mRNA_H-canaliculatus_F_contig13039.2517.1|Name=mRNA_H-canaliculatus_F_contig13039.2517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13039:1166..2620- (Hapterophycus canaliculatus Oshoro5f female)
GCGCTGGGCCTGGTCTCGGCGGGCACGAACAACTCTCGGGTGGCGCAGCT
CCTGCGACAACTGAGCGAGTTCTACGCGAGAGAGGCGTCTCACCTGTTCG
TCACGCGCATCGCACAGGGTCTCAATCACATGGGCAAGGTGCGTCCTTCG
TGCTTCGTGCGGCGTGTCGTGCTCCTAGGGCGCTCTATTTTTCGTCGCTC
AAGGAGAACGTTTTTTTTTTTGCTGCTGCTGCTGTTGCTTGGACAAGAAG
CATCGTTGTGGTTTTGTGCTCGGGCAAGGAAGCACGCCCGCTTGCCTGAG
CGAGGGGACTTACTCTGATGTCGAAGACGAGTGGGTCCTGCAGGGTACTT
GGTGTCTGCTATCATTGTGCTCTCTGGGCCAAACCTACGTGCTGTGTTTT
TTTTTAAGACCCCGAGCACGCTGGTGCGTGTTTCTTCTCATGTCCCCAGC
CCGCTTCCACTCAATCTCTCTCCCCCCTCCGCTCACGGTTTCCAGAAACG
AAAGGCGTTCAGCGGGCTTGTACCGTTCGGTCCGATGATATCGTCCATCT
GTAGACGTCGATACAGCATACCTCCTTTTTTGCTTGCCGCGCTCACGTGT
TGACGGCTTCGTGAACCCCCTTCCTTACCCCCCCCCCCCGATTAACATGA
TGTATTTCCTTTTGCTTCATTTCAGGGGCTCATGTCGCTTCACCCGTTCC
ACTCGGACCGCCTGATCCTCAACCCCGCGGGGCTGGCGGGCGTGCTGACG
GTGCTGCACCTGTGCATGGACCTCAAGAACACGCTGCTGGGCAAGCACCA
CTACGTGCTCTTTTACATCACGGCGGCGATGAACCCGCGCATGCTCATGA
CGGTGAGGCAACTCAAAGAAAAATCGTCGTTGGAAGTCGGGGGGGACAGG
TATACTGCTGTGATAGGGTAGGCCGCAGCCGGCTCCAAGCACGCGTGATC
TCGAAGCGCACCCGGAGAAGCTTTTCACACTCCCGGCGATAGCTGTCGGT
GCGGGTGCCACCGAAGCGGCGCCGACAATTTTTCGTCGGCCGGCAGAAGC
GGGCGCCGCTACCAGCTACCGACCACGATTCTCGCTCTGGTCTGATTCGT
GTCTCAAGGGACACTGAAGAGAAAAGTCCTGCGAACTGTTCATCTGTTTT
CGCCGTTGCCAGAGGCAAAGGCGGTCGGTCGGCTTCCATCGCGGTTGCGC
TTCTGAATCTTTCTCCGAAGCCTGAAACTGAATCCGATGTCTCCGTCTCC
CCCCGTACGGTTCTCCCCTTCCGTCGGGCGCCCTCGGCTACCGCAGGTGG
ACGCGGACCTCAAGCCCCTGCCGGTTAACGTGCGGGTTGGGCAAGCGGTG
GAGACGGTGGGGCAGGCGGGGAAGCCCAAGACCATCACGGGGTTCCAGAC
TCACACCACGCCGGTGTTGCTGGGAGTGCGAGACCGCGCGGAGGTAAGAC
AAGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13039:1166..2620-

>mRNA_H-canaliculatus_F_contig13039.2517.1 ID=mRNA_H-canaliculatus_F_contig13039.2517.1|Name=mRNA_H-canaliculatus_F_contig13039.2517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13039:1166..2620- (Hapterophycus canaliculatus Oshoro5f female)
GCGCTGGGCCTGGTCTCGGCGGGCACGAACAACTCTCGGGTGGCGCAGCT
CCTGCGACAACTGAGCGAGTTCTACGCGAGAGAGGCGTCTCACCTGTTCG
TCACGCGCATCGCACAGGGTCTCAATCACATGGGCAAGGCGCTGGGCCTG
GTCTCGGCGGGCACGAACAACTCTCGGGTGGCGCAGCTCCTGCGACAACT
GAGCGAGTTCTACGCGAGAGAGGCGTCTCACCTGTTCGTCACGCGCATCG
CACAGGGTCTCAATCACATGGGCAAGGGGCTCATGTCGCTTCACCCGTTC
CACTCGGACCGCCTGATCCTCAACCCCGCGGGGCTGGCGGGCGTGCTGAC
GGTGCTGCACCTGTGCATGGACCTCAAGAACACGCTGCTGGGCAAGCACC
ACTACGTGCTCTTTTACATCACGGCGGCGATGAACCCGCGCATGCTCATG
ACGGGGCTCATGTCGCTTCACCCGTTCCACTCGGACCGCCTGATCCTCAA
CCCCGCGGGGCTGGCGGGCGTGCTGACGGTGCTGCACCTGTGCATGGACC
TCAAGAACACGCTGCTGGGCAAGCACCACTACGTGCTCTTTTACATCACG
GCGGCGATGAACCCGCGCATGCTCATGACGGTGGACGCGGACCTCAAGCC
CCTGCCGGTTAACGTGCGGGTTGGGCAAGCGGTGGAGACGGTGGGGCAGG
CGGGGAAGCCCAAGACCATCACGGGGTTCCAGACTCACACCACGCCGGTG
TTGCTGGGAGTGCGAGACCGCGCGGAGGTAAGACAAGAGGTGGACGCGGA
CCTCAAGCCCCTGCCGGTTAACGTGCGGGTTGGGCAAGCGGTGGAGACGG
TGGGGCAGGCGGGGAAGCCCAAGACCATCACGGGGTTCCAGACTCACACC
ACGCCGGTGTTGCTGGGAGTGCGAGACCGCGCGGAGGTAAGACAAGAG
back to top