mRNA_H-canaliculatus_F_contig13033.2516.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13033.2516.1
Unique NamemRNA_H-canaliculatus_F_contig13033.2516.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13033.2516.1 vs. uniprot
Match: D7FYZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYZ3_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 1.210e-194
Identity = 285/361 (78.95%), Postives = 303/361 (83.93%), Query Frame = 1 
Query:    1 PGHYNSTGRLGDPDDGLDIGRAIHRKRQRPTASFHYGTKRDRPRKSEDPA-PGPGDYQVPSGLDVRRDPRRRDLSFLSTSRRFDAPATGGRSRAPGPGSYVTAPSDFDRCRAIDNRTRPRRASFTAPVGFQSTTLRFAGHSRRDSGELGPASYSISGMVEELNRRGHASGRQVSAFGSTARRFPTNGAGQPNLPGPGAYDLGVGGGADSGEDQHTRHSAPVGPSGKRLPSALSAFASATKRFAPPCSADPGPAPGQYDVRPLEKPRGVLPLGKQSKNRFETGKMGEPXXXXXXXXXXXXVEQLGRARSRKNIMVSSQARFADPSAPKTNNPGPGYYGTGMVYGNLLKQTYNIAIAEQSADI 1080
            PGHYN+   LGDPDDGLDIGRAIHRKRQRPTASFHYGTKRDR RK+ D A PGPGDY++PSGLDVRRDP RRDLSFLSTSRRFD PATG  SRAPGPGSYVTAPSDFDRCRA DNR RPRRASFTAPVGFQSTTLRFAG  RR   E+GPASYS+ GM EE++R+G  +GR V AFGSTARRFP  G GQP+LP PGAY+LGV GG D  E Q+TR S PVGPSGKR PSALSAFASATKRFAPP SA+PGPAPGQY+VRPL+KPRGVLPLGKQSKNRFE+ K                V QLGRARSRKNIMVSSQARF DPSAP +NNPGPGYYGTGMVYGNLLKQTYNIAIAE SADI
Sbjct:  232 PGHYNAARGLGDPDDGLDIGRAIHRKRQRPTASFHYGTKRDRQRKTRDTAAPGPGDYKIPSGLDVRRDPGRRDLSFLSTSRRFDEPATGAGSRAPGPGSYVTAPSDFDRCRAKDNRVRPRRASFTAPVGFQSTTLRFAGDGRRGGSEIGPASYSLGGMAEEISRKGSGTGRNVGAFGSTARRFPVAGGGQPHLPRPGAYELGVAGGVDREEGQNTRPSVPVGPSGKRFPSALSAFASATKRFAPPFSANPGPAPGQYEVRPLDKPRGVLPLGKQSKNRFESAKNAVRPGLGPGSYDVRDVVQLGRARSRKNIMVSSQARFTDPSAPSSNNPGPGYYGTGMVYGNLLKQTYNIAIAEASADI 592
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BLAST of mRNA_H-canaliculatus_F_contig13033.2516.1 vs. uniprot
Match: A0A8J2WKT4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WKT4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.440e-16
Identity = 99/334 (29.64%), Postives = 141/334 (42.22%), Query Frame = 1 
Query:  145 PAPGPGDYQVPSGLDVRRDPRRRDLSFLSTSRRFDAPATGGRSRAPGPGSYVTAPSDFD-RCRAIDNRTRPRRASFTAPVGFQSTTLRFAGHSRRDSGELGPASYS-ISGMVEELNRRGHASGRQVSAFGSTARRFPTNGAGQPNLPG---------PGAYDLGVGGGA-DSGEDQHTRHSAPVGPSGKRLPSALSAFASATKRFAPPCSADPGPAPGQYDVRPLE-KPRGVLPL--GKQSKNRFETGKMGEPXXXXXXXXXXXXVEQLGRARSRKNIMVSSQARFAD-------PSAPKTNNPGPGYYGTGMVYGNLLKQTYNIAIAEQSADI 1080
            P+PGPG Y++ +  D  + P R+   F     RFD   +GGR  +PGPG YV   + F+ R R       P R  F        T         R S   GP +Y   +G+++E+ RR  +   +  AFG++  RF      + ++P          PG    G   G    G+ +  +     GP  K+     +AFAS   R         GPAP  Y+V+ ++    G   L  G + K+R      G P            +E      +RK +MV S  RF         P  P  + PGPG Y   M +GNLLK TYN+AIAEQ  ++
Sbjct:  262 PSPGPGSYEI-AASDASQAPGRKGTYFSHGGSRFDNSFSGGRYTSPGPGQYVGQSNAFEQRTRRRSRHLGPARTGFGCGGRTDWT---------RGSHGAGPGAYEPANGVIDEMRRRVSS---RTGAFGTSQTRFQVAKERKRDVPDVHGRSVVEIPGHRKRGPSLGLWFRGQPRQMK-----GPLPKQCRQCTAAFASGAPRGLD--YGRDGPAPTAYNVKGIDWNASGTAKLHGGGRRKDRDN----GVPGPGSFNLAHDYHIEP-----NRKRVMVVSAERFGPGGPLYQHPDVP--DEPGPGNYDYEMPFGNLLKPTYNVAIAEQCREL 564
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BLAST of mRNA_H-canaliculatus_F_contig13033.2516.1 vs. uniprot
Match: A0A7S2MNP6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MNP6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.850e-7
Identity = 45/117 (38.46%), Postives = 57/117 (48.72%), Query Frame = 1 
Query:  745 PGPAPGQYD--VRPLEKPRGV--LPLGKQSKNRFETGKMGEPXXXXXXXXXXXXVEQLGRAR-SRKNIMVSSQARFADPSAPKTNNPGPGYYGTGMVYGNLLKQTYNIAIAEQSADI 1080
            PGP PG Y+  +R  +  +GV  L LGK      E G    P              +       R + MV+   RF  P     + PGPG Y + ++YGNLLKQTYN+AIAE SADI
Sbjct:   17 PGPGPGSYEAGIR-WDNVKGVAQLRLGK------ERGTTPPPVATGADIGPGTYARRDDLCNVPRGSAMVTKSKRFDKPR--NASVPGPGSYDSELLYGNLLKQTYNMAIAESSADI 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13033.2516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYZ3_ECTSI1.210e-19478.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2WKT4_9STRA7.440e-1629.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MNP6_9STRA3.850e-738.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13033contigH-canaliculatus_F_contig13033:1..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.9
Seed ortholog evalue5.7e-80
Seed eggNOG ortholog2880.D7FYZ3
Preferred nameSTPG2
EggNOG free text desc.Sperm-tail PG-rich repeat
EggNOG OGs28KRR@1,2QT7V@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_002230.1
Exons4
Model size1198
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13033.2516.1prot_H-canaliculatus_F_contig13033.2516.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13033 469..2230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929037.0973334-UTR-H-canaliculatus_F_contig13033:0..4681622929037.0973334-UTR-H-canaliculatus_F_contig13033:0..468Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13033 1..468 +
1696845656.640381-UTR-H-canaliculatus_F_contig13033:0..4681696845656.640381-UTR-H-canaliculatus_F_contig13033:0..468Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13033 1..468 +
1622929037.7090406-UTR-H-canaliculatus_F_contig13033:2230..23421622929037.7090406-UTR-H-canaliculatus_F_contig13033:2230..2342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13033 2231..2342 +
1696845656.6989336-UTR-H-canaliculatus_F_contig13033:2230..23421696845656.6989336-UTR-H-canaliculatus_F_contig13033:2230..2342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13033 2231..2342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929037.1158702-CDS-H-canaliculatus_F_contig13033:468..7091622929037.1158702-CDS-H-canaliculatus_F_contig13033:468..709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 469..709 +
1696845656.6554825-CDS-H-canaliculatus_F_contig13033:468..7091696845656.6554825-CDS-H-canaliculatus_F_contig13033:468..709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 469..709 +
1622929037.142753-CDS-H-canaliculatus_F_contig13033:1131..12591622929037.142753-CDS-H-canaliculatus_F_contig13033:1131..1259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 1132..1259 +
1696845656.665041-CDS-H-canaliculatus_F_contig13033:1131..12591696845656.665041-CDS-H-canaliculatus_F_contig13033:1131..1259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 1132..1259 +
1622929037.1851504-CDS-H-canaliculatus_F_contig13033:1570..17741622929037.1851504-CDS-H-canaliculatus_F_contig13033:1570..1774Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 1571..1774 +
1696845656.6736617-CDS-H-canaliculatus_F_contig13033:1570..17741696845656.6736617-CDS-H-canaliculatus_F_contig13033:1570..1774Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 1571..1774 +
1622929037.602093-CDS-H-canaliculatus_F_contig13033:2185..22301622929037.602093-CDS-H-canaliculatus_F_contig13033:2185..2230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 2186..2230 +
1696845656.681934-CDS-H-canaliculatus_F_contig13033:2185..22301696845656.681934-CDS-H-canaliculatus_F_contig13033:2185..2230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13033 2186..2230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13033.2516.1

>prot_H-canaliculatus_F_contig13033.2516.1 ID=prot_H-canaliculatus_F_contig13033.2516.1|Name=mRNA_H-canaliculatus_F_contig13033.2516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MVEELNRRGHASGRQVSAFGSTARRFPTNGAGQPNLPGPGAYDLGVGGGA
DSGEDQHTRHSAPVGPSGKRLPSALSAFASATKRFAPPCSADPGPAPGQY
DVRPLEKPRGVLPLGKQSKNRFETGKMGEPPGLGPGSYDVRDVEQLGRAR
SRKNIMVSSQARFADPSAPKTNNPGPGYYGTGMVYGNLLKQTYNIAIAEQ
SADIY*
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mRNA from alignment at H-canaliculatus_F_contig13033:1..2342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13033.2516.1 ID=mRNA_H-canaliculatus_F_contig13033.2516.1|Name=mRNA_H-canaliculatus_F_contig13033.2516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13033:1..2342+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGGCCATTACAACTCCACCGGGAGACTCGGGGACCCGGACGACGGCCT
CGATATAGGTAGAGCCATCCACCGCAAACGACAACGACCTACAGCCTCGT
TCCACTACGGCACGAAGCGGGATAGACCGCGCAAGTCGGAGGACCCCGCG
CCAGGTCCGGGGGACTACCAAGTCCCGAGCGGACTAGACGTCCGGCGCGA
CCCGAGGCGCCGCGACTTGTCGTTTTTGTCGACCTCCCGCCGGTTCGATG
CACCCGCGACCGGGGGCAGAAGCCGAGCTCCCGGCCCGGGCTCGTACGTC
ACCGCCCCCAGCGATTTCGACCGCTGTCGAGCAATCGACAACCGAACGCG
CCCACGGCGTGCCTCTTTCACGGCGCCGGTAGGTTTCCAGTCCACCACTC
TACGGTTCGCTGGCCACTCGAGGAGGGATAGTGGGGAACTCGGGCCAGCG
AGCTACAGCATCAGCGGAATGGTGGAAGAGCTCAATCGCAGGGGTCACGC
CAGCGGGAGACAGGTTAGCGCGTTTGGGTCCACGGCGAGGCGATTTCCAA
CGAATGGCGCCGGTCAGCCCAACTTGCCCGGGCCTGGGGCGTACGACCTT
GGGGTCGGAGGGGGAGCTGATTCGGGAGAGGATCAACACACTCGGCATTC
CGCTCCCGTCGGTCCTAGCGGGAAACGGCTCCCGAGCGCCTTATCTGCTT
TTGCATCAGGTGCGTACATTTCCCACGCGCTCTTTCTGCACGAAACCCGA
CGTCGCCATGGTTGCGGTTGGACAAGCCACGGTTGCGGTTGGACTTCGCA
TCGCGCATGCAGACACATAAATATATCGAATGCCCTCGGGCAGTACGCTG
AAAGGTGGGAAACCTGTGGAGACAGGGTACGATCGGTCATCGGATGACGC
ATGGGTGCACATCGTGTGCTTCTCCTCCCTTTGCACCTGCGAAACCCTTC
ACTCGCATTCTCCAAGCACGCAGTCTTCAACCTTGCACACCTTGATGTGC
AGTTAGAGGAGCTTCGCTACAACGAACTTCGCAGTACACAAGTCGCGAAT
CGTTCCAGGTATATTTTTCCACTTGGCAAAAACAGTCCGATCCTTTCAAC
CCTTCCCTGCTGACTAATCCCAATACGACAGCCACCAAGCGGTTTGCTCC
ACCCTGCTCTGCTGACCCGGGCCCGGCACCGGGCCAATACGACGTCCGAC
CGCTGGAAAAGCCTCGAGGAGTCTTACCCCTCGGCAAGCAGTCCAAGAAT
CGATTTGAGGTATCTACCACATGGTTGAACTGGTCACGCCGCTTTGGCCT
CGAGAAGTGAAGAGCTGCGATTGATCATGAGAGACCGTGTGCCGCCTTGT
CGTTACAGCCACTGCCCGCGCTGCGCACGCGTCGTATGCGCCACATTTCC
CCTCTTCTTGGCAGCAGCATTGTTGATTTCTGGATACACGACTGACATTT
ATTCGGTCGTGTTCGCTCCCTCGCCTATCGCCTGCAATTTTCGGGGTCAA
GAGCACGAAATTGTGAACCAACGCCAATCAACCTCGACGCCCACCAACAA
CGCTCTTCGACCCACCACAGACCGGGAAGATGGGCGAACCGCCAGGGCTC
GGGCCGGGGAGCTATGACGTTCGGGATGTGGAGCAGCTCGGAAGGGCACG
ATCGCGGAAAAATATCATGGTCAGCTCGCAAGCGCGGTTCGCAGACCCGA
GCGCGCCGAAAACAAACAACCCCGGCCCGGGATACTACGGCACGGGGATG
GTGTACGGAAACCTGCTAAAGCAGGTTGGTTGCCGGTGTTTTGCGACGAA
TGTTTTACATTGAGTTGGACATGGGAAGTACGTTGTGGCTTCTCCTGGAG
GCCGAGACGATGTGCGACTTCTGAAGGGAATTCCAACGGACGCCTCATTC
CTGCTTCCTCTCTGTGCGCTCAACCGTTGCAGGCCTACTCTTTCGCGCCG
GCTTGGCATGCTTATGTTTATGACAACCGTCCTTCTTCACGATATAAACA
AGCACACCTTGGACAACCCACGAAAATCATGCGTAACGCGACTCTCTCCG
CGGAATGCGCGTGGCGTGGTGTCTAAAATGCGTTTGGCCGACGCGTGATG
CGTTGAAGGGATTGTTTTGCTGCAACCTCCAACGTCTCCGTTGCCGGTGC
GGCCGCTGTCTGTCTCTGCATTTCTTCCCGCGCAGACATACAACATCGCC
ATCGCAGAGCAGAGTGCCGACATCTACTGAGACCCTTTCACGGAAGGCAA
CGCCTTCGTCAGGAAACGGCCGCTTTTTTATCAGCGGGTCGACTTTAGAC
GGTATCATCAGGGGTGGGCTACAAGTAGGACTGAAACGGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13033:1..2342+

>mRNA_H-canaliculatus_F_contig13033.2516.1 ID=mRNA_H-canaliculatus_F_contig13033.2516.1|Name=mRNA_H-canaliculatus_F_contig13033.2516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13033:1..2342+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGAAGAGCTCAATCGCAGGGGTCACGCCAGCGGGAGACAGGTTAG
CGCGTTTGGGTCCACGGCGAGGCGATTTCCAACGAATGGCGCCGGTCAGC
CCAACTTGCCCGGGCCTGGGGCGTACGACCTTGGGGTCGGAGGGGGAGCT
GATTCGGGAGAGGATCAACACACTCGGCATTCCGCTCCCGTCGGTCCTAG
CGGGAAACGGCTCCCGAGCGCCTTATCTGCTTTTGCATCAGATGGTGGAA
GAGCTCAATCGCAGGGGTCACGCCAGCGGGAGACAGGTTAGCGCGTTTGG
GTCCACGGCGAGGCGATTTCCAACGAATGGCGCCGGTCAGCCCAACTTGC
CCGGGCCTGGGGCGTACGACCTTGGGGTCGGAGGGGGAGCTGATTCGGGA
GAGGATCAACACACTCGGCATTCCGCTCCCGTCGGTCCTAGCGGGAAACG
GCTCCCGAGCGCCTTATCTGCTTTTGCATCAGCCACCAAGCGGTTTGCTC
CACCCTGCTCTGCTGACCCGGGCCCGGCACCGGGCCAATACGACGTCCGA
CCGCTGGAAAAGCCTCGAGGAGTCTTACCCCTCGGCAAGCAGTCCAAGAA
TCGATTTGAGCCACCAAGCGGTTTGCTCCACCCTGCTCTGCTGACCCGGG
CCCGGCACCGGGCCAATACGACGTCCGACCGCTGGAAAAGCCTCGAGGAG
TCTTACCCCTCGGCAAGCAGTCCAAGAATCGATTTGAGACCGGGAAGATG
GGCGAACCGCCAGGGCTCGGGCCGGGGAGCTATGACGTTCGGGATGTGGA
GCAGCTCGGAAGGGCACGATCGCGGAAAAATATCATGGTCAGCTCGCAAG
CGCGGTTCGCAGACCCGAGCGCGCCGAAAACAAACAACCCCGGCCCGGGA
TACTACGGCACGGGGATGGTGTACGGAAACCTGCTAAAGCAGACCGGGAA
GATGGGCGAACCGCCAGGGCTCGGGCCGGGGAGCTATGACGTTCGGGATG
TGGAGCAGCTCGGAAGGGCACGATCGCGGAAAAATATCATGGTCAGCTCG
CAAGCGCGGTTCGCAGACCCGAGCGCGCCGAAAACAAACAACCCCGGCCC
GGGATACTACGGCACGGGGATGGTGTACGGAAACCTGCTAAAGCAGACAT
ACAACATCGCCATCGCAGAGCAGAGTGCCGACATCTACTGAACATACAAC
ATCGCCATCGCAGAGCAGAGTGCCGACATCTACTGA
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