mRNA_H-canaliculatus_F_contig13032.2515.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13032.2515.1
Unique NamemRNA_H-canaliculatus_F_contig13032.2515.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13032.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13032contigH-canaliculatus_F_contig13032:472..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.994842-CDS-H-canaliculatus_F_contig13032:471..9091622929036.994842-CDS-H-canaliculatus_F_contig13032:471..909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13032 472..909 +
1696845656.6230922-CDS-H-canaliculatus_F_contig13032:471..9091696845656.6230922-CDS-H-canaliculatus_F_contig13032:471..909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13032 472..909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929037.0375543-UTR-H-canaliculatus_F_contig13032:909..9541622929037.0375543-UTR-H-canaliculatus_F_contig13032:909..954Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13032 910..954 +
1696845656.6313713-UTR-H-canaliculatus_F_contig13032:909..9541696845656.6313713-UTR-H-canaliculatus_F_contig13032:909..954Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13032 910..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13032.2515.1prot_H-canaliculatus_F_contig13032.2515.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13032 472..909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13032.2515.1

>prot_H-canaliculatus_F_contig13032.2515.1 ID=prot_H-canaliculatus_F_contig13032.2515.1|Name=mRNA_H-canaliculatus_F_contig13032.2515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
ATLLGRNIKTGGIDGGTCVAQNPCEEISSEHVHLYPCARVYPYTDRNHLR
GHPSKCRHQRPSRAFFGLTFGSWWRRQKTEIRQGAPTGFPRQPRPTMALP
DRKGVPRSRRQWGVWHDQHRRKQSTTGRHVGSSPRASRLHFVPGA*
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mRNA from alignment at H-canaliculatus_F_contig13032:472..954+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13032.2515.1 ID=mRNA_H-canaliculatus_F_contig13032.2515.1|Name=mRNA_H-canaliculatus_F_contig13032.2515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=483bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13032:472..954+ (Hapterophycus canaliculatus Oshoro5f female)
GCGACCCTGCTCGGTCGGAACATCAAAACAGGAGGGATAGACGGCGGAAC
GTGCGTGGCACAGAATCCATGTGAGGAAATATCTTCTGAACACGTGCATT
TGTACCCCTGTGCTAGAGTATATCCCTACACCGACAGAAACCATTTACGT
GGACATCCTAGCAAGTGTCGACATCAGAGGCCTTCGCGAGCATTTTTCGG
ACTAACCTTTGGCTCATGGTGGCGTCGTCAGAAGACGGAGATTCGTCAGG
GGGCTCCAACCGGCTTCCCTCGACAGCCTCGCCCGACGATGGCCCTACCA
GATCGAAAGGGTGTTCCTCGCTCTCGACGTCAATGGGGGGTATGGCACGA
CCAGCATCGGCGAAAGCAATCCACCACTGGACGCCACGTCGGGTCTTCAC
CCCGTGCCTCCAGACTCCACTTTGTTCCAGGTGCATGATGGTTTATTTCT
GATCTGTTTTTTTAGTCCCCTGGACAAAAAATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13032:472..954+

>mRNA_H-canaliculatus_F_contig13032.2515.1 ID=mRNA_H-canaliculatus_F_contig13032.2515.1|Name=mRNA_H-canaliculatus_F_contig13032.2515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13032:472..954+ (Hapterophycus canaliculatus Oshoro5f female)
GCGACCCTGCTCGGTCGGAACATCAAAACAGGAGGGATAGACGGCGGAAC
GTGCGTGGCACAGAATCCATGTGAGGAAATATCTTCTGAACACGTGCATT
TGTACCCCTGTGCTAGAGTATATCCCTACACCGACAGAAACCATTTACGT
GGACATCCTAGCAAGTGTCGACATCAGAGGCCTTCGCGAGCATTTTTCGG
ACTAACCTTTGGCTCATGGTGGCGTCGTCAGAAGACGGAGATTCGTCAGG
GGGCTCCAACCGGCTTCCCTCGACAGCCTCGCCCGACGATGGCCCTACCA
GATCGAAAGGGTGTTCCTCGCTCTCGACGTCAATGGGGGGTATGGCACGA
CCAGCATCGGCGAAAGCAATCCACCACTGGACGCCACGTCGGGTCTTCAC
CCCGTGCCTCCAGACTCCACTTTGTTCCAGGTGCATGAGCGACCCTGCTC
GGTCGGAACATCAAAACAGGAGGGATAGACGGCGGAACGTGCGTGGCACA
GAATCCATGTGAGGAAATATCTTCTGAACACGTGCATTTGTACCCCTGTG
CTAGAGTATATCCCTACACCGACAGAAACCATTTACGTGGACATCCTAGC
AAGTGTCGACATCAGAGGCCTTCGCGAGCATTTTTCGGACTAACCTTTGG
CTCATGGTGGCGTCGTCAGAAGACGGAGATTCGTCAGGGGGCTCCAACCG
GCTTCCCTCGACAGCCTCGCCCGACGATGGCCCTACCAGATCGAAAGGGT
GTTCCTCGCTCTCGACGTCAATGGGGGGTATGGCACGACCAGCATCGGCG
AAAGCAATCCACCACTGGACGCCACGTCGGGTCTTCACCCCGTGCCTCCA
GACTCCACTTTGTTCCAGGTGCATGA
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