mRNA_H-canaliculatus_F_contig13023.2509.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13023.2509.1
Unique NamemRNA_H-canaliculatus_F_contig13023.2509.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13023.2509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13023contigH-canaliculatus_F_contig13023:2279..3060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size784
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.2032852-CDS-H-canaliculatus_F_contig13023:2278..30581622929036.2032852-CDS-H-canaliculatus_F_contig13023:2278..3058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13023 2279..3058 +
1696845656.241688-CDS-H-canaliculatus_F_contig13023:2278..30581696845656.241688-CDS-H-canaliculatus_F_contig13023:2278..3058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13023 2279..3058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13023.2509.1prot_H-canaliculatus_F_contig13023.2509.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13023 2279..3058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13023.2509.1

>prot_H-canaliculatus_F_contig13023.2509.1 ID=prot_H-canaliculatus_F_contig13023.2509.1|Name=mRNA_H-canaliculatus_F_contig13023.2509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp
SFLLLFLSQQKKSPTVSAAFTCSFLLVFLSQQTEKGVDGRCRCRGWGMAT
WITELQSRGPAPGAERLVLSIRGKAERNIWVRPAHNNLDDGRQTLHRRHT
GRGTIAEPTLSYILWLTVGHDRSEHVHFRSTEYFMFHKLREVTHNSALLM
IWSPSMNPHCFELNSSLGLRLTRRTSGGVPTVSLCFLSKGTTAETRTTQD
TQVKTFHVRMIEREREGERQRERANNHHEQDPSFAPLVHPWRWAECWPLY
LALRLAAGKG
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mRNA from alignment at H-canaliculatus_F_contig13023:2279..3060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13023.2509.1 ID=mRNA_H-canaliculatus_F_contig13023.2509.1|Name=mRNA_H-canaliculatus_F_contig13023.2509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=782bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13023:2279..3060+ (Hapterophycus canaliculatus Oshoro5f female)
TCCTTCCTCCTTCTTTTTTTGTCGCAACAAAAAAAATCGCCAACGGTGAG
CGCAGCATTTACGTGTTCCTTCCTTCTTGTTTTTTTGTCGCAACAAACAG
AGAAGGGCGTGGACGGTAGGTGTCGCTGCCGGGGGTGGGGGATGGCGACA
TGGATTACCGAACTACAAAGCAGAGGGCCGGCACCGGGTGCAGAGAGGCT
CGTTTTGTCCATCCGAGGGAAAGCGGAGAGAAATATATGGGTGCGTCCTG
CTCATAATAACTTGGACGACGGACGGCAGACGCTACACAGAAGACACACG
GGCAGAGGGACAATAGCAGAGCCTACACTATCATATATTTTGTGGCTTAC
CGTAGGTCACGATCGATCAGAACATGTTCATTTTCGAAGTACTGAGTATT
TTATGTTCCATAAATTGCGGGAAGTTACGCACAACTCTGCCCTGCTCATG
ATTTGGTCCCCATCAATGAACCCTCATTGTTTCGAACTCAACAGCAGCCT
CGGGCTACGCCTCACACGACGTACCTCAGGAGGTGTCCCAACGGTGTCGT
TATGTTTTCTTTCAAAAGGGACAACAGCAGAAACGAGGACAACACAAGAC
ACACAAGTCAAGACGTTCCACGTAAGGATGATAGAGAGGGAGAGAGAGGG
AGAGAGACAGAGAGAGAGAGCAAACAACCATCACGAACAAGATCCCTCCT
TCGCCCCCCTAGTCCACCCGTGGCGCTGGGCAGAATGCTGGCCTCTCTAC
CTTGCTCTCCGCCTCGCGGCAGGAAAAGGCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13023:2279..3060+

>mRNA_H-canaliculatus_F_contig13023.2509.1 ID=mRNA_H-canaliculatus_F_contig13023.2509.1|Name=mRNA_H-canaliculatus_F_contig13023.2509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13023:2279..3060+ (Hapterophycus canaliculatus Oshoro5f female)
TCCTTCCTCCTTCTTTTTTTGTCGCAACAAAAAAAATCGCCAACGGTGAG
CGCAGCATTTACGTGTTCCTTCCTTCTTGTTTTTTTGTCGCAACAAACAG
AGAAGGGCGTGGACGGTAGGTGTCGCTGCCGGGGGTGGGGGATGGCGACA
TGGATTACCGAACTACAAAGCAGAGGGCCGGCACCGGGTGCAGAGAGGCT
CGTTTTGTCCATCCGAGGGAAAGCGGAGAGAAATATATGGGTGCGTCCTG
CTCATAATAACTTGGACGACGGACGGCAGACGCTACACAGAAGACACACG
GGCAGAGGGACAATAGCAGAGCCTACACTATCATATATTTTGTGGCTTAC
CGTAGGTCACGATCGATCAGAACATGTTCATTTTCGAAGTACTGAGTATT
TTATGTTCCATAAATTGCGGGAAGTTACGCACAACTCTGCCCTGCTCATG
ATTTGGTCCCCATCAATGAACCCTCATTGTTTCGAACTCAACAGCAGCCT
CGGGCTACGCCTCACACGACGTACCTCAGGAGGTGTCCCAACGGTGTCGT
TATGTTTTCTTTCAAAAGGGACAACAGCAGAAACGAGGACAACACAAGAC
ACACAAGTCAAGACGTTCCACGTAAGGATGATAGAGAGGGAGAGAGAGGG
AGAGAGACAGAGAGAGAGAGCAAACAACCATCACGAACAAGATCCCTCCT
TCGCCCCCCTAGTCCACCCGTGGCGCTGGGCAGAATGCTGGCCTCTCTAC
CTTGCTCTCCGCCTCGCGGCAGGAAAAGGCTCCTTCCTCCTTCTTTTTTT
GTCGCAACAAAAAAAATCGCCAACGGTGAGCGCAGCATTTACGTGTTCCT
TCCTTCTTGTTTTTTTGTCGCAACAAACAGAGAAGGGCGTGGACGGTAGG
TGTCGCTGCCGGGGGTGGGGGATGGCGACATGGATTACCGAACTACAAAG
CAGAGGGCCGGCACCGGGTGCAGAGAGGCTCGTTTTGTCCATCCGAGGGA
AAGCGGAGAGAAATATATGGGTGCGTCCTGCTCATAATAACTTGGACGAC
GGACGGCAGACGCTACACAGAAGACACACGGGCAGAGGGACAATAGCAGA
GCCTACACTATCATATATTTTGTGGCTTACCGTAGGTCACGATCGATCAG
AACATGTTCATTTTCGAAGTACTGAGTATTTTATGTTCCATAAATTGCGG
GAAGTTACGCACAACTCTGCCCTGCTCATGATTTGGTCCCCATCAATGAA
CCCTCATTGTTTCGAACTCAACAGCAGCCTCGGGCTACGCCTCACACGAC
GTACCTCAGGAGGTGTCCCAACGGTGTCGTTATGTTTTCTTTCAAAAGGG
ACAACAGCAGAAACGAGGACAACACAAGACACACAAGTCAAGACGTTCCA
CGTAAGGATGATAGAGAGGGAGAGAGAGGGAGAGAGACAGAGAGAGAGAG
CAAACAACCATCACGAACAAGATCCCTCCTTCGCCCCCCTAGTCCACCCG
TGGCGCTGGGCAGAATGCTGGCCTCTCTACCTTGCTCTCCGCCTCGCGGC
AGGAAAAGGC
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