mRNA_H-canaliculatus_F_contig1302.2508.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1302.2508.1
Unique NamemRNA_H-canaliculatus_F_contig1302.2508.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: D8LPR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR3_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 3.200e-165
Identity = 253/334 (75.75%), Postives = 282/334 (84.43%), Query Frame = 1 
Query:    1 LEKIFSLFDFDGNGGLSEVESEIMLESVVRGQAGAGDLTLRDLKDWISEREDVAIFLSNFTDARMIISSLELVETSVALGMSMCKQVNVHDFSAVEHAGSTVDGARAGEILRSLAAVGNTTHLRAGVEAITDADAAAVVRMLTGSSGSSGARGRGERVDLVALEEFLRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAEAPDCLAFKPGMETVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFKKNQ 1002
            LEKIF+LFDFDGNG LS+VE+EIMLE VVRG A AG+LTLRDLKDWISEREDVA+FLSNF +ARMIISS ELV+ SVALGMS CK  +  D S  EH   TVDGARAGEILRSL  +G T  LRAG+EA+ +ADAAAVVRML+G+SG++G  GR ERVD+ ALEE LRFWVAFSVVDE G+G VS+ DLKALLWL GGTGGEEPPEATVQKTAN IDESQDGVI R+EWMR++AVLDEGTG     VGYDGGLLKVFRRYDDDHSGSITA EM MMVRDSVS+AIAEAPD  + +P +E VVE L KDVA+DLV  +DV G+GMLGWTEFKKNQ
Sbjct:   81 LEKIFALFDFDGNGALSDVEAEIMLECVVRGGAAAGELTLRDLKDWISEREDVAVFLSNFIEARMIISSQELVDRSVALGMSTCKHPSPQDDSPGEHKDGTVDGARAGEILRSLTTLGKTECLRAGLEAVVEADAAAVVRMLSGNSGATG--GRRERVDVEALEELLRFWVAFSVVDEDGVGSVSMGDLKALLWLGGGTGGEEPPEATVQKTANGIDESQDGVINRIEWMRFTAVLDEGTGN----VGYDGGLLKVFRRYDDDHSGSITATEMTMMVRDSVSEAIAEAPDNCSLRPDIEPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQ 408
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: A0A7S2HX53_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HX53_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.370e-21
Identity = 83/302 (27.48%), Postives = 149/302 (49.34%), Query Frame = 1 
Query:  103 AGDLTLRDLKDWISEREDVAIFLSNFTDARMIISSLELVETSVALGMSMCKQVNVH-DFSAVEHAGSTVDGARAGEILRSLAAVGNTTHLRAGVEAITDADAAAVVRMLTGSSGSSGARGRGERVDLVALEEF---LRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAE-APDCLAFKPGMETVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFK 993
            A  L L  L +W+S ++DVA +LS F++ R+I +  + VE +VA  + +   ++V  DF  V            G++   L A+  +      V+          V++L     ++G    GE    V L+EF   +  W++FS +D+ G G +  ++L+ LLW+S GT   EP    +++   +ID   +G + RMEW+RY+   D  TG    T  +   L +++ + D D+S +I+ +E+  ++ + +   + E A DC      +    + L ++VA   V  +D  G G L W++F+
Sbjct:  179 ASGLPLAHLIEWLSVQDDVAAYLSCFSEVRLIGTEQKAVELAVACAIDLFISMSVEKDFPKVS----------TGQLRYLLIALPGSPASSEEVDL--------AVKLLD----ANGETEDGE----VYLDEFSSAVTPWLSFSTMDKNGNGAIDQKELRHLLWVSNGTNTREPTPIALRRAFENIDVDGNGHVSRMEWLRYAGEFDPETG----TCKFGSSLRELWNKMDTDNSLTISVSEVDELLTEEIMKTVEEMAVDC---PDKLMKNFKTLARNVASKAVADMDTDGNGTLEWSDFR 447
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: F0YP15_AURAN (EF-hand domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP15_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 2.870e-17
Identity = 59/213 (27.70%), Postives = 107/213 (50.23%), Query Frame = 1 
Query:  391 TDADAAAVVRMLTGSSGSSGARGRGERVDLVALEEF---LRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAI----AEAPDCLAFKPGMETVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFKKNQAS 1008
            T+ +    +++L  S GS       E+  +V+ +EF   +  W++F VVD+ G G++S ++LK L+W+SGG    EP    V +    +D ++DGV+ R+EW+ Y++  D  TG     + +      +F + D D S  I+A E+  +    +  A+    +EA  C  F       ++VL  +   ++   +D   +GM+ W EF  + A+
Sbjct:   22 TEEEIQTFIKLLDESGGSV------EQDGMVSFDEFADAILPWISFGVVDDDGTGELSPDELKLLIWISGGDNTPEPSAQVVLQAMRGVDVNKDGVLVRLEWLCYNSGYDPATG----AMKFSKAAKDMFAKMDADGSSEISAKEIKEIFAKEIGVALENMESEAHCC--FSQSSRDALQVLMMNAGNEVADLIDEDHSGMIEWDEFYAHSAT 222
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: A0A8J8SX33_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SX33_HALGN)

HSP 1 Score: 66.2 bits (160), Expect = 1.320e-8
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 1 
Query:  499 LRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGT----GESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAEAPDCLAFKPGMET-VVEVLFKDVAKDLVTQLDVAGTGMLGWTEFK 993
            +R W +FS  D     ++   +LK L+WL       EP EA VQ+    ID    G I R+E+++Y A  D  T    G        D  L  +F + D D  G +  +EM  ++   + +   E      F+  +E  +++   +++A++LVT+LDV   G + W EFK
Sbjct:  135 MRPWASFSATDINNDNELDAGELKTLIWLVDEV---EPSEARVQRDLKLIDADGSGTIDRLEYIQYLAAPDTSTPGIGGGGAGRDPLDYSLKSMFDKSDMDKDGLLNLDEMNHLL---IENYFMEE-----FRAKLEDPMIQKFIRNLARELVTKLDVRKEGGVDWAEFK 293
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: I7M776_TETTS (EF hand protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M776_TETTS)

HSP 1 Score: 65.1 bits (157), Expect = 5.390e-8
Identity = 46/167 (27.54%), Postives = 80/167 (47.90%), Query Frame = 1 
Query:  493 EFLRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAEAPDCLAFKPGMETVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFK 993
            + +R W AFS  D     ++SV+DL+ LLW+      EEP    V    N+IDE Q   I R EW+RY    D   G   ++      L + F +++   +G +  + +  ++R+   + I ++    A    +  +++ L  D+ KDL  Q ++     LGW +F+
Sbjct:  284 DVMRAWCAFSASDVNNKNRLSVQDLRILLWIYE---DEEPNTFKVIAEMNNIDEDQSKTIDRKEWIRYLCSEDRTGGHVFKS-----NLKRNFEKFEKPTNGLVDVSNIKEILREVFREKIVKSKKNRAALDNINKLIDKLCIDITKDL-RQKELTE---LGWGDFR 438
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: A0A7S2Y3U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3U1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.730e-7
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  559 EDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAEAPD 870
            E+LKAL+W+S G    EP +  V+    ++D    G + R+EW+ ++   D  TG     V     + + F   D D SG+ITA EMV +++ S+ D +++A +
Sbjct:    2 EELKALIWISEGIDTPEPFDKVVRVAMEEMDVDNSGHVDRLEWLLFNVHFDPATG----CVKPAKQIKESFLSLDTDGSGTITAAEMVEILKQSMEDILSKAKE 101
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: A0A6H5KRT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.990e-7
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  892 METVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFKKNQ 1002
            ME VVE L KDV +DLV  +DV G+GMLGWTE KKNQ
Sbjct:    1 MEPVVETLVKDVTRDLVAVMDVTGSGMLGWTELKKNQ 37
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Match: I7M9T1_TETTS (EF hand protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M9T1_TETTS)

HSP 1 Score: 58.9 bits (141), Expect = 5.430e-6
Identity = 39/170 (22.94%), Postives = 79/170 (46.47%), Query Frame = 1 
Query:  499 LRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTGGEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYDGGLLKVFRRYDDDHSGSITANEMVMMVRDSVSD--AIAEAP---DCLAFKPGMETVVEVLFKDVAKDLVTQLDVAGTGMLGWTEFK 993
            ++ W AF   D  G  K+S++++K L++      G++P E  +Q     +D+   G + R EW+ Y  +      ++     +   L  +F +YD D SG +T  E++ +++  +S   AI +A    D   +   + ++ E + + +     T       G + W++FK
Sbjct:  280 MKSWGAFDSTDINGDNKLSIDEIKYLIYAYE---GDKPDEDRLQYEMEQLDKDNSGYVSRKEWIEYLCIDPNNASKAA----FRSDLKVLFLQYDQDRSGFLTKQELLQLLQQQMSSYTAIYQAKGGKDLQDYNGMVNSITETIMEQIEGKYQT-------GRVSWSQFK 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1302.2508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPR3_ECTSI3.200e-16575.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HX53_9STRA7.370e-2127.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YP15_AURAN2.870e-1727.70EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A8J8SX33_HALGN1.320e-829.41Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
I7M776_TETTS5.390e-827.54EF hand protein n=1 Tax=Tetrahymena thermophila (s... [more]
A0A7S2Y3U1_9STRA1.730e-732.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KRT1_9PHAE3.990e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I7M9T1_TETTS5.430e-622.94EF hand protein n=1 Tax=Tetrahymena thermophila (s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1302contigH-canaliculatus_F_contig1302:19140..26530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score480.7
Seed ortholog evalue5.6e-133
Seed eggNOG ortholog2880.D8LPR3
KEGG koko:K19932
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs29SF0@1,2RXDP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons10
Model size1017
Cds size1017
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1302.2508.1prot_H-canaliculatus_F_contig1302.2508.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1302 19140..26530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.006696-CDS-H-canaliculatus_F_contig1302:19139..192311622929036.006696-CDS-H-canaliculatus_F_contig1302:19139..19231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 19140..19231 +
1696845656.1449475-CDS-H-canaliculatus_F_contig1302:19139..192311696845656.1449475-CDS-H-canaliculatus_F_contig1302:19139..19231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 19140..19231 +
1622929036.0225875-CDS-H-canaliculatus_F_contig1302:21306..214271622929036.0225875-CDS-H-canaliculatus_F_contig1302:21306..21427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 21307..21427 +
1696845656.1565058-CDS-H-canaliculatus_F_contig1302:21306..214271696845656.1565058-CDS-H-canaliculatus_F_contig1302:21306..21427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 21307..21427 +
1622929036.0345297-CDS-H-canaliculatus_F_contig1302:21842..218991622929036.0345297-CDS-H-canaliculatus_F_contig1302:21842..21899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 21843..21899 +
1696845656.1650321-CDS-H-canaliculatus_F_contig1302:21842..218991696845656.1650321-CDS-H-canaliculatus_F_contig1302:21842..21899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 21843..21899 +
1622929036.049718-CDS-H-canaliculatus_F_contig1302:22218..224041622929036.049718-CDS-H-canaliculatus_F_contig1302:22218..22404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 22219..22404 +
1696845656.1736112-CDS-H-canaliculatus_F_contig1302:22218..224041696845656.1736112-CDS-H-canaliculatus_F_contig1302:22218..22404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 22219..22404 +
1622929036.0672376-CDS-H-canaliculatus_F_contig1302:22979..230931622929036.0672376-CDS-H-canaliculatus_F_contig1302:22979..23093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 22980..23093 +
1696845656.1828175-CDS-H-canaliculatus_F_contig1302:22979..230931696845656.1828175-CDS-H-canaliculatus_F_contig1302:22979..23093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 22980..23093 +
1622929036.0831256-CDS-H-canaliculatus_F_contig1302:23372..234321622929036.0831256-CDS-H-canaliculatus_F_contig1302:23372..23432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 23373..23432 +
1696845656.1920981-CDS-H-canaliculatus_F_contig1302:23372..234321696845656.1920981-CDS-H-canaliculatus_F_contig1302:23372..23432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 23373..23432 +
1622929036.0954392-CDS-H-canaliculatus_F_contig1302:24300..244031622929036.0954392-CDS-H-canaliculatus_F_contig1302:24300..24403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 24301..24403 +
1696845656.2005384-CDS-H-canaliculatus_F_contig1302:24300..244031696845656.2005384-CDS-H-canaliculatus_F_contig1302:24300..24403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 24301..24403 +
1622929036.1075768-CDS-H-canaliculatus_F_contig1302:24743..248381622929036.1075768-CDS-H-canaliculatus_F_contig1302:24743..24838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 24744..24838 +
1696845656.208458-CDS-H-canaliculatus_F_contig1302:24743..248381696845656.208458-CDS-H-canaliculatus_F_contig1302:24743..24838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 24744..24838 +
1622929036.124068-CDS-H-canaliculatus_F_contig1302:25819..259361622929036.124068-CDS-H-canaliculatus_F_contig1302:25819..25936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 25820..25936 +
1696845656.2189045-CDS-H-canaliculatus_F_contig1302:25819..259361696845656.2189045-CDS-H-canaliculatus_F_contig1302:25819..25936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 25820..25936 +
1622929036.144788-CDS-H-canaliculatus_F_contig1302:26458..265301622929036.144788-CDS-H-canaliculatus_F_contig1302:26458..26530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 26459..26530 +
1696845656.232942-CDS-H-canaliculatus_F_contig1302:26458..265301696845656.232942-CDS-H-canaliculatus_F_contig1302:26458..26530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 26459..26530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1302.2508.1

>prot_H-canaliculatus_F_contig1302.2508.1 ID=prot_H-canaliculatus_F_contig1302.2508.1|Name=mRNA_H-canaliculatus_F_contig1302.2508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bp
LEKIFSLFDFDGNGGLSEVESEIMLESVVRGQAGAGDLTLRDLKDWISER
EDVAIFLSNFTDARMIISSLELVETSVALGMSMCKQVNVHDFSAVEHAGS
TVDGARAGEILRSLAAVGNTTHLRAGVEAITDADAAAVVRMLTGSSGSSG
ARGRGERVDLVALEEFLRFWVAFSVVDEAGLGKVSVEDLKALLWLSGGTG
GEEPPEATVQKTANDIDESQDGVIKRMEWMRYSAVLDEGTGESTRTVGYD
GGLLKVFRRYDDDHSGSITANEMVMMVRDSVSDAIAEAPDCLAFKPGMET
VVEVLFKDVAKDLVTQLDVAGTGMLGWTEFKKNQASRE*
back to top

mRNA from alignment at H-canaliculatus_F_contig1302:19140..26530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1302.2508.1 ID=mRNA_H-canaliculatus_F_contig1302.2508.1|Name=mRNA_H-canaliculatus_F_contig1302.2508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7391bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1302:19140..26530+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGAAGATATTTTCCCTCTTTGACTTTGACGGCAACGGGGGTCTCAG
CGAGGTCGAGTCTGAGATCATGCTGGAGTCCGTCGTGAGAGGGTGAGCAC
CTGATCGCCGTCAGAGGCCACCTTGAACGATGGTTTGTGGAAGTTGGTAG
ATCGCCCTTGAATATGCCACCAATTCCCCGCTACACCATGACGAACCTCT
TGTAGAACACACCGGGAAATTCCAGCAAGGCAGTCTTTCACTCCGTTCTT
GGCCATTGTCGATGTGTGCGGTCATTCGACACTGATTTTGTTCACATCTA
TGCCGTGTAAGCCGACGACCAACATTTTCCGGCGTCGTTTTGGCTCAATT
GTTTTGGGTGTCAGAGACGACGTAGCTTATGTGTTTCTTTCCTGTCGGCT
ACTGTGGTTCTCCTGTTGGTTCGGCTCACTCTTTTCCAGGGCTTCGAGAG
TGGCGATGATGCCGCAGCCCGAGGACGTGCTCGATTCTATCGAGAAGTTA
ACGGCTAGCCTCTTCGCCCACTCAAAGCGGTGAGCACTTCGACATACACA
AGATATACTTCATTTCTATGCACACAGCAGTAATGTATCGAAGCGCATCC
GCCACCCGCCTTGGAAAAGTATATACGAAGTATCTAAGACTGATATCGTA
CGATTGGGCAGTCACATAGCTCGGCCCTTGGGCATTATTTGATTATCTAC
TCCCGCGCACTCGTACAACGTAAACAAGCAAGATCCTTGCGCGAGAAAGA
TCTTGCGCGCTGAAGGCTGCTGCTCTCCTGCACGGATGTCGGTGGGAACG
AGATGCACGGAAGTTGGTGTTAATGACCATGGTTCTTAGGGTATCCTCCA
TGCTGTGCCCACTCCTCCCAATACCTTTCGGCCTAGGAGTAGTAAAACCT
TCGAATTCTCCTCGGGGTAGATCGCATGAGGGGAGAGGGGGTGGGGAGGA
AATATCCCTCCCTCTTTTCAATTTGCCCCAGAGGCATCAAGTTTCCCACG
AGTTTCCCTCGTGCGGATAGCACATGCCCTATTTTTGAGCCGGTCTTTTG
CCATCGCGAAGTGCTCAAGCATGAATTAGGGTCAAACTCGTCTATAAACC
GGCACTCTAAGCGAGATGTTATGGGTGATACGAACATGGCCATTACTACA
ATCTTCGGTGTCCACACGAAAGACAATCCGCTGAAAAGTTGTCAAATCGT
TGATTTCCCGCCGGGGACACTTGCCCCCAAATAACGTTTTCGAAAGCATA
AGATACCCCGCCCTTTTTTAATATCCCCCCGGTGTGTACGTTTCAGATGA
AGAAAGCCTCCCTCCGGCGAGGAAGCCCCTGAGAAAACGGTAGTTGTAAA
AAAAATGTTTTTGTCATGGTTCGGTGATGCCCGAAGAAAGACGCACAACA
AAAGGAAAAGCGGGTACTTGTGCATGTGCTGTGAAGACATACTCTATAGC
TGCAGCTGTTGGTTTCTTCGATGGCAATATGGTGGCACATCGTCCGAGAC
ACGCTTGAGATTCCACGTGATTGTCCACTCTTGAGACTTCACGTGGTGGT
CCGAGCCACCAAACAACACAAGAACATTACTTCGATTCACACACGTCGCA
TGTCATGTTGTCCTGTATAAACCTGAAACTGACGAGGATCGGTATTCCTA
TGGACACACGTGTGTTGTCCAACCTATTAGACTCGGAGAAATGTCTGAAA
GTCTTCCCGTTGCGACAACGTTGGACAACGTTTACATCGTAGTCTTTAAT
CGACCATCAAAGAATCACATTCGGGGTGCCTCCGTTCAACCGCGAAAAAT
CGCATCGTCTCAATGACTCCCCTTCGGGTTCCTGAGCAAATGGAGCATGC
GACCTCCTTTTTCACCATGAGCAGGCGCCTTAGTGTTTCGAGCGCGATCC
CATAGGGCTTTCTGCTCTTTCGAACTGAGATGCATCTTTGACGAATCTCC
AGACCAGAGGCAACCAGAAATAAGTTCATGAATCACCCGTAAGAGCATGT
GAGACTGAAAAAGAAGATAGGACCCATCATTCCCTGGTCATCGCAAATCC
AACACGATCCCTCTGCCCAGGCATTGCGTCATGTGATTTGGGGATAGTAG
AGTGCAATTTCCCTCAGCCCACACGGTGTTGGATGTCTCCCACCACCACT
TCACGTGTGCTCGGCAGGCAAGCCGGGGCGGGGGATTTGACGCTTCGAGA
CCTGAAGGATTGGATCTCGGAGCGCGAGGATGTTGCGATCTTCCTCTCCA
ACTTTACCGACGCCAGGATGATTATCTCTAGCCTAGAGGTGGATTCCCTT
GGCTTTTGTCCCGGTGTCGTTGTGGCTGAATCGCCTCTTGGACGCGAACT
ACAGAGTGCAGTCGTTCCCAGGCTGTACATGCCAAAATTTCTTCTCGACG
CCTCCAGGTGGGGATACGACATCCGAACAGGCTCATTCGCATACCGGTGG
TGGGCGCTATCCTATCCTCTTACCTTCGCAATGAAGGCAACGGAGGCACA
CTACAGGGTTTGGGCACCATCACCAGCAACAACAACCACCACCACAGCAA
TGCGTTCTAGTCCCCTCCCCCAAGCCGCGTATTAAACATCCTCCCGCCCG
TCTGTTCGTTGGCTTTAAAACGCAACTCCACCCAAATTATCGCGATCGGG
CGCAACTCGCTCCTGTACGGGCATGCCATCGGTGCGCGACGCTCGTCTTC
CAGTTGGTCGAGACGAGCGTTGCCCTTGGAATGAGCATGTGCAAGCAGGT
GAACGTTCACGTAGCGTAATGTGTTGATCAACGAACGCGCAACGGGCAAT
CTACAACACCACCCATGTTGAGTGTGTGCGCCCGACAAGATCACCCTCTC
TGCTCCCCCATTGGACGGTGGGCTCGGAATAGCTTCAAGTCTTTGGCTGT
ACCATTCGAAAAATCTGGGCGGCTCGCAGGTGGGGTGTGTGTGTGAAGCC
AACGCTCCTATTCTGGTTGTTCGCATTCTGAGACATGCTGTCGTTCAAAT
GAAAAGTGACCCCGAGCAACGCACACACGTCCGCGATCGCCACCTCCACC
TTACCACCTGTGCCCGCCGCCCGCTTCAGGATTTTTCAGCTGTGGAGCAT
GCGGGCAGCACGGTGGACGGGGCAAGAGCCGGGGAGATACTCCGGTCTCT
GGCGGCAGTGGGCAACACGACTCACCTGAGGGCAGGGGTGGAGGCGATCA
CAGACGCAGACGCGGCTGCCGTCGTGCGAATGCTCACGGGGAGCTCTGGA
TCTTCGGGGGCACGAGTAAGAAATAAGCAAGCAAAGACGAAGCTGCGCTT
CCTATTCTGATGGGGTGGTTGCAAGGCGTTCTGGATTCGTCGATGTTCAT
GGTAGCTCGTGGTTCTCTCCATTCTGGTGGCGACGATACGACGAGGGCTT
TCGGTTCGTCTTTCACAAACGTGCTAAAACATCCAAAATTGTGAGAAGAA
GAGCACGGAAGCAAAATATTTCGACAGCAGTCGAGCTGGCAGCCCTACGT
ACATCACAGGACACCCGCAAAACTTCAATCTTCTTACGATGTTGTGGAGA
AAGATATGCACGCAACGTGTCCAACCTGTACGGCAGTGGAACAGCTCGAA
TGCTTCGCACACCCCGCCGTCATATGGCGTTATGAGTCCTTCATGACTGT
TAAAATGGATGGAGCGGATGCCTGACAAAGGCTGACATTTTCCGAACACA
AAACGCACGCCGGCTGCCTCCTCCTCCTTTACCGGGCAAAGACCTATCGC
ATTTTCCACGTTCTGCAAGGTTCCACAGGGAAACTCAACGCTTACGTAAT
TTTGTGATCCCGCGGCTCGATCAAATGTGAACACCAGGAGGGAAGGGGAG
AACGAGTAGACTTGGTAGCACTGGAGGAGTTTCTCCGGTTTTGGGTGGCG
TTTTCTGTGGTCGACGAGGCTGGACTGGGCAAAGTTAGCGTTGAGGACCT
TAAGGTACCGATACTTTCGTACACTGCGTGAACATGTTCATCATCTCCCT
CCCATCATAATTTGACATCGCGAAGCATACCCTCGTTGGAGCAGGCTTTG
ATAGCTTTCGCGGTCGAGGGGCTTAAGGTGAAATGCGGTTGACAGAATGC
ACCGCCCAACGATACGAAGCGAATAGACAAGCCACGTTGAGCCTTGGCTA
CTGTACTTTCAGCGATTTTTTCATTTCGAGTTTGCATGCTGATTTGCTTG
GCGATATTCTTCATCTCGACTTATGATCGCCAGGCTTTGCTGTGGCTTAG
TGGAGGCACAGGTGGGGAGGAGCCCCCGGAGGCTACCGTTCAGGTACGGA
TGAAGTGGTGGTGGCCGGCCTTTTCTGCAACGCACTTTACCAGTGAGGGT
GCTGCGATATGACTATCTTCGACAACACTTTCGACGATTGATGAAACAGC
CGGCGGGGATGTGCGTTGGGGCCTCTCAGGCGTGTGCGAGTGCAACAAAG
GGCGCCGATCGCAGCTTTTCCGTGGGATGTGATTTTAGTAGTCGCCATTG
GGGCTTTTCGACCTTCATGGATAACAGCCGGGCGTGCATTCATAGGGTTG
GCGTCGAACGATTTATCCGCACGATGGGTACAAAATGCAGATTTGGTAGG
TGCTGAATGCGCCGTTCACGACACGGTTTGAAATTCATCTCGCATATTTC
GCGGAACGAGTTGAACCGACAGGGCCTCGTGTTGATATTCCGTTCCCATC
TCGTCTTTCTGAGATCGAGTCCCTGTGCGGATGAACCCCGCCGCAATCCG
TTCATCGCGTTCAAAGTCTCAAACAATCCCCTCCTGCGTCGTGGGTCTCT
AAAGAGTAGCATGGTCTAGCTATCGATCACGCCGCTCAAGAAGGAAGGGG
ACGCCACTAGATCCAAACACCCTCGCGTTCCGAAAAATATCGTTCGGCTT
GAAGACTGCAACCATGCATGGCACGGACGGTGCGATCGCCCCGGCAACCC
TCACAACAGCGCAACACTCTCGCGAAGAGCACTGAGATGTCTTGATCTAA
CCGACGAGGAGGAGGAAAGGTCGCCCCATCTTCGAGGCGCACGGTCAGAT
CCATGACCACACGACAAATGAAGGCACATACAAGAAATGTCGCTGCCCCT
CGCTCAGGCTGACATTCCCTTTTCCCGACTGACCCTATCTACCGCTGCTG
CGAATCGAAAGAAAACGGCAAACGATATCGACGAGAGCCAGGATGGCGTG
ATCAAGCGTATGGAATGGATGCGCTACTCAGCAGTGCTTGACGAAGGAAC
AGGCGAGTCGACCAGTGTACCGAATCGTACACCGATCGAGACCCTCCAAT
TTTCCCCGCAGCAGCCGGGGTGGGCACAACGCGGCAGGAAAGGGGTTATT
CCCTACCCCTCAGATATAATTTCTGGCCAAGAGTTGGCTCGTTCTGCATC
CTTGGTCTTGTTTACCTTCTCCTTCTCCCCACATCGCACACCGTCGAAGT
TAATCGATATCCCATCCATTCATCGTCTCAGCGCGCTGTACGCTTGCTTT
CTTGTGGAGAACTCTTGCATTTTTTCTCTTCCAGGCTGATGAACATTTAC
TCGTAGAAGGTCGAATCAGGTATATCTACATGCAATCTCGGTTCGCTCAT
TCAGGGACTGTTGGATACGACGGCGGACTGCTTAAAGTGTTTCGACGCTA
TGACGACGATCACAGCGGCAGCATAACAGCAAACGAGATGGTCATGATGG
TGAGTGCAAACAAACTCCATGGGAGGCAACACACCACTTGTGATGAACGA
GCAGCGCTAAACTTTCACGCACCGTCCTTCAAACATGCTTCTCTACAGAA
AACACATTTATTTTGCTAAAGAAGACCATCGATCTGACATAGGCCATCTT
TTGTCCGCTATCCACCTTCCTTTACCGTTTGGATGTGTACCAAGGAAGGA
ATAAAAGCGGTGGTCAAGAAGGGTGTCATCAGGTCTACGAGTAAAGACAA
CGAGAGCCACAGTAACAGCTAAAGCAAAAACTTGAATATCTTCGCGCGCA
CGAAACAATCGACACGGAAATGCCTAGACACCTGCAAAGCTAAAAACTGA
CGGCAGCTTTCGAACGGAGAAGTTCGGGGATGATATGGCGCACGACATCA
TCGACACAGCTACCTAGGTGTTTGAAGTTCGATTGAAACAAACATCCGGA
TCGTCCACCGAGATGTTGCTTTTTCACGACAATGTTGCGGTCGTTCCACA
GTCCGGTTGTCTGGAAAACGCACATTCATTGTAGTCTGGATAACATACAT
TGTTGTCTCAAACCATGCATTCGCTAGCGACGTCCGATCTAGATCCAGAC
TTACATATTGCAAAAGCAGCAATCTATCATATGAGATCAGAGTCAAGCTC
TCTCTGAGTTTATGGACTCCGCGATGAACGACTTCCACATCGTCAATTAT
ATGCGTGCGTGATGTCTCTGACTTTCTCTAGAAGAAGACTAGGATACCGA
AGAGGCAGAGCAGGAATGACAAGTATCGGTCCACACACCATGCTATACTC
TGACGTCGTACGGCGTCTTACTTTGGGGTAGCTGTGTTGTGATGTTCTGC
GTACGTGTGACGCAAGCGCATTGCGCCGACCCTGACAACCCGGAGGTCAC
AAGCCATGCGCCATGCACGCGCATAATGCCTGAAAAAAACGATCGTGATG
GGTTGTGTCTGGTCATGTCACGGCGGACAGGTTCGAGACTCAGTTTCAGA
TGCAATAGCCGAGGCTCCCGACTGCCTTGCCTTCAAGCCGGGGATGGAAA
CTGTGGTGGAGGTTCTCTTCAAGGACGTCGCGAAGGATCTTGTCACGGTA
AGTCTCGGTCAACACACATCAGTGTGGTGTCGGTAAGCACGGCATCCGAA
GCCGCGCGCTTTGGTAACCCAAAGGTTGCTTCACCTCGTAGGCTACCTTG
ACACCGATTCCCGTCCGCCCTTCCACTACTTTTTTAAAGAAAACATAACA
ACACCGTTAGAACACCTCCTTTACTTACATAGCCTGCGTCTTTCGCGACA
GGATTTTATAAAACAAGTCAACAACACCGAAGGAATACCCACCTGACAGG
ATTTGTTTGGGTCGATTGTACATGGACAATGCTTGTTTTAAGTCAGCGTT
TTGGCGTTGTCAATACGAGTTAGGACAGGAACTCCACGGCTAGAACTGGT
AGATTCGTTGACAGGCATTCAGTGGCAGGCCTTTAGAAGACGTGCCTACA
TTGTGCATACTCCTTTCAGGCGTTCTGCTTCTCAAACGAGCAACGCACGT
TACGTGGCATTTTACGTTTAGAAATATCGATGTAACAGTGCTCTCCCTTG
TTGGCGTGAAAAATGTCAGCAACTGGACGTGGCCGGTACCGGGATGCTCG
GATGGACGGAATTCAAGAAAAATCAGGCAAGCCGTGAATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1302:19140..26530+

>mRNA_H-canaliculatus_F_contig1302.2508.1 ID=mRNA_H-canaliculatus_F_contig1302.2508.1|Name=mRNA_H-canaliculatus_F_contig1302.2508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2034bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1302:19140..26530+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGAAGATATTTTCCCTCTTTGACTTTGACGGCAACGGGGGTCTCAG
CGAGGTCGAGTCTGAGATCATGCTGGAGTCCGTCGTGAGAGGCTCGAGAA
GATATTTTCCCTCTTTGACTTTGACGGCAACGGGGGTCTCAGCGAGGTCG
AGTCTGAGATCATGCTGGAGTCCGTCGTGAGAGGGCAAGCCGGGGCGGGG
GATTTGACGCTTCGAGACCTGAAGGATTGGATCTCGGAGCGCGAGGATGT
TGCGATCTTCCTCTCCAACTTTACCGACGCCAGGATGATTATCTCTAGCC
TAGAGGCAAGCCGGGGCGGGGGATTTGACGCTTCGAGACCTGAAGGATTG
GATCTCGGAGCGCGAGGATGTTGCGATCTTCCTCTCCAACTTTACCGACG
CCAGGATGATTATCTCTAGCCTAGAGTTGGTCGAGACGAGCGTTGCCCTT
GGAATGAGCATGTGCAAGCAGGTGAACGTTCACTTGGTCGAGACGAGCGT
TGCCCTTGGAATGAGCATGTGCAAGCAGGTGAACGTTCACGATTTTTCAG
CTGTGGAGCATGCGGGCAGCACGGTGGACGGGGCAAGAGCCGGGGAGATA
CTCCGGTCTCTGGCGGCAGTGGGCAACACGACTCACCTGAGGGCAGGGGT
GGAGGCGATCACAGACGCAGACGCGGCTGCCGTCGTGCGAATGCTCACGG
GGAGCTCTGGATCTTCGGGGGCACGAGATTTTTCAGCTGTGGAGCATGCG
GGCAGCACGGTGGACGGGGCAAGAGCCGGGGAGATACTCCGGTCTCTGGC
GGCAGTGGGCAACACGACTCACCTGAGGGCAGGGGTGGAGGCGATCACAG
ACGCAGACGCGGCTGCCGTCGTGCGAATGCTCACGGGGAGCTCTGGATCT
TCGGGGGCACGAGGAAGGGGAGAACGAGTAGACTTGGTAGCACTGGAGGA
GTTTCTCCGGTTTTGGGTGGCGTTTTCTGTGGTCGACGAGGCTGGACTGG
GCAAAGTTAGCGTTGAGGACCTTAAGGGAAGGGGAGAACGAGTAGACTTG
GTAGCACTGGAGGAGTTTCTCCGGTTTTGGGTGGCGTTTTCTGTGGTCGA
CGAGGCTGGACTGGGCAAAGTTAGCGTTGAGGACCTTAAGGCTTTGCTGT
GGCTTAGTGGAGGCACAGGTGGGGAGGAGCCCCCGGAGGCTACCGTTCAG
GCTTTGCTGTGGCTTAGTGGAGGCACAGGTGGGGAGGAGCCCCCGGAGGC
TACCGTTCAGAAAACGGCAAACGATATCGACGAGAGCCAGGATGGCGTGA
TCAAGCGTATGGAATGGATGCGCTACTCAGCAGTGCTTGACGAAGGAACA
GGCGAGTCGACCAAAAACGGCAAACGATATCGACGAGAGCCAGGATGGCG
TGATCAAGCGTATGGAATGGATGCGCTACTCAGCAGTGCTTGACGAAGGA
ACAGGCGAGTCGACCAGGACTGTTGGATACGACGGCGGACTGCTTAAAGT
GTTTCGACGCTATGACGACGATCACAGCGGCAGCATAACAGCAAACGAGA
TGGTCATGATGGGACTGTTGGATACGACGGCGGACTGCTTAAAGTGTTTC
GACGCTATGACGACGATCACAGCGGCAGCATAACAGCAAACGAGATGGTC
ATGATGGTTCGAGACTCAGTTTCAGATGCAATAGCCGAGGCTCCCGACTG
CCTTGCCTTCAAGCCGGGGATGGAAACTGTGGTGGAGGTTCTCTTCAAGG
ACGTCGCGAAGGATCTTGTCACGGTTCGAGACTCAGTTTCAGATGCAATA
GCCGAGGCTCCCGACTGCCTTGCCTTCAAGCCGGGGATGGAAACTGTGGT
GGAGGTTCTCTTCAAGGACGTCGCGAAGGATCTTGTCACGCAACTGGACG
TGGCCGGTACCGGGATGCTCGGATGGACGGAATTCAAGAAAAATCAGGCA
AGCCGTGAATGACAACTGGACGTGGCCGGTACCGGGATGCTCGGATGGAC
GGAATTCAAGAAAAATCAGGCAAGCCGTGAATGA
back to top