mRNA_H-canaliculatus_F_contig1302.2507.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1302.2507.1
Unique NamemRNA_H-canaliculatus_F_contig1302.2507.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1302.2507.1 vs. uniprot
Match: D8LPR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 7.860e-15
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 FQVFEGVVANPADLFSLFDTRNKDLVDVSEVFTSAFLFAAGTPDDFDAK 147
            FQVFEG++ NP +LFS+FD R K LVDVSEVF SAFLFAAGTP   DAK
Sbjct:   32 FQVFEGILTNPTELFSVFDNRGKGLVDVSEVFASAFLFAAGTPKGLDAK 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1302.2507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPR3_ECTSI7.860e-1573.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1302contigH-canaliculatus_F_contig1302:17403..18354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LPR3
KEGG koko:K19932
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs29SF0@1,2RXDP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size151
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.9475374-CDS-H-canaliculatus_F_contig1302:17402..174771622929035.9475374-CDS-H-canaliculatus_F_contig1302:17402..17477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 17403..17477 +
1696845656.1138334-CDS-H-canaliculatus_F_contig1302:17402..174771696845656.1138334-CDS-H-canaliculatus_F_contig1302:17402..17477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 17403..17477 +
1622929035.9632974-CDS-H-canaliculatus_F_contig1302:18278..183531622929035.9632974-CDS-H-canaliculatus_F_contig1302:18278..18353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 18279..18353 +
1696845656.1276674-CDS-H-canaliculatus_F_contig1302:18278..183531696845656.1276674-CDS-H-canaliculatus_F_contig1302:18278..18353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1302 18279..18353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1302.2507.1prot_H-canaliculatus_F_contig1302.2507.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1302 17403..18353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1302.2507.1

>prot_H-canaliculatus_F_contig1302.2507.1 ID=prot_H-canaliculatus_F_contig1302.2507.1|Name=mRNA_H-canaliculatus_F_contig1302.2507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
FQVFEGVVANPADLFSLFDTRNKDLVDVSEVFTSAFLFAAGTPDDFDAKA
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mRNA from alignment at H-canaliculatus_F_contig1302:17403..18354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1302.2507.1 ID=mRNA_H-canaliculatus_F_contig1302.2507.1|Name=mRNA_H-canaliculatus_F_contig1302.2507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=952bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1302:17403..18354+ (Hapterophycus canaliculatus Oshoro5f female)
TTTCAGGTGTTCGAAGGCGTGGTGGCGAATCCTGCGGACCTCTTCTCGCT
CTTCGACACCCGAAACAAGGACCTGGTAAGGTCCTCAAACTTAGGTTATC
TAAACAACGGCTGAGTACGCAGTTAAGAAGGGCCTTGTTGAAAAAAGGAG
GTCGACAGAGGTGCGGCGACTCTGTGAATCTGGGTCCGGAAAATCAGCAG
TGAAAGACATCAAGGGTCGACCCCAACTTGCGTCTTATTCCTACAAGTCG
CAACGCCCGGATGCACCTACTGCTATTCTTGGGTCATCCTTTGATGCGGA
TACTTGGAAGGGGGGCGAGAGGGTTCTGGTTCACTACCGGTACATGGTGG
AGATTGGACTTAGATAAGCTTTGTCGTACAGTAGTCAGAAACGTCGACCT
CGAGAAAGGGCAGCAGCAGCAGAAGCACCACCAGTGCCGTCGCAAGACAA
GAGCTCGAAAGACCATGGCGACAATCATAGTGCGCCTACTGAGCTTCAAT
TTCACGGCTGGAACTCAAGAATCGATCGATGGTATTGATGCCTGCACCCC
ATGCTGCACGATGCAACCTATCTAGAAGAAAAGTACGCCCGCTAGTGCTT
TCTTACCGCATGAGGTGATCTCCTCCCCTACACAAAAGCTTGCGATCACC
GAGAAATTCACTCCCATATGCTGCAAGCATTCACTCGAAGCCATAACGAT
GTGCACCAACCTGGTGGTGATGGAATGCAATATCATCGTTACCTGATTAC
CATCCGATGGTCAAGGGATCATACCTCGACTGGAATCGAATCCAGGCGGG
TGCCGCACGACGATTCGATTAATCAGAACAACCCGGACCCTGATCAACCG
AAATGAAATCAAACGAAATTCGCAAGGTTGACGTGTCGGAGGTGTTCACG
TCCGCTTTCCTCTTCGCTGCTGGAACACCCGACGATTTCGACGCAAAGGC
AG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1302:17403..18354+

>mRNA_H-canaliculatus_F_contig1302.2507.1 ID=mRNA_H-canaliculatus_F_contig1302.2507.1|Name=mRNA_H-canaliculatus_F_contig1302.2507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1302:17403..18354+ (Hapterophycus canaliculatus Oshoro5f female)
TTTCAGGTGTTCGAAGGCGTGGTGGCGAATCCTGCGGACCTCTTCTCGCT
CTTCGACACCCGAAACAAGGACCTGTTTCAGGTGTTCGAAGGCGTGGTGG
CGAATCCTGCGGACCTCTTCTCGCTCTTCGACACCCGAAACAAGGACCTG
GTTGACGTGTCGGAGGTGTTCACGTCCGCTTTCCTCTTCGCTGCTGGAAC
ACCCGACGATTTCGACGCAAAGGCAGTTGACGTGTCGGAGGTGTTCACGT
CCGCTTTCCTCTTCGCTGCTGGAACACCCGACGATTTCGACGCAAAGGCA
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